rna-XM_014638967.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014638967.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9UKF5|ADA29_HUMAN (Disintegrin and metalloproteinase domain-containing protein 29 OS=Homo sapiens OX=9606 GN=ADAM29 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 5.846e-13 Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 0 Query: 102 KPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQ-NPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSPRVPSESQSPEAPSQTQLPLPVDES 215 K +KP + V P E RR + + +P P+Q+Q P P+Q+ +P+Q+Q P PSQ+Q +PS+ Q P +PS++ PS+SQ P PSQ Q L +S Sbjct: 699 KKSKPIKKQQDVQTPSAKEEEKIQRRPHELPPQSQPWVMPSQSQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVTPSQRQPQLMPSQS 813 HSP 2 Score: 67.0106 bits (162), Expect = 1.109e-11 Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 0 Query: 102 KPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQ-NPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSPRVPSESQSPEAPS 204 +P + ++P V P +PP + PQ P+Q+Q P P+Q+Q +P+Q+Q P +PSQ+ PS+ Q P PS+ Q +PS+SQ P PS Sbjct: 724 RPHELPPQSQPWVMPSQSQPPVTPS-------QSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVTPSQRQPQLMPSQSQPPVTPS 820
BLAST of rna-XM_014638967.2 vs. Araport11
Match: AT5G43250.1 (| nuclear factor Y%2C subunit C13 | Chr5:17356174-17356566 REVERSE LENGTH=130 | 201606) HSP 1 Score: 150.984 bits (380), Expect = 9.793e-47 Identity = 80/133 (60.15%), Postives = 96/133 (72.18%), Query Frame = 0 Query: 7 EEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQN 139 EEE G SI+ EFP RVKKIM LDKD+ +++SEAL +++ STELFL FLAEKSA V EKKRKTVNL+H+R+AVKRHQPT DFLLD LP P++P K K V K+ PP GTRRID FF K + + Sbjct: 2 EEEEG-SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVTAEKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQPVK------HTKSVSDKKIPAPPIGTRRIDDFFSKGKAKT 127
BLAST of rna-XM_014638967.2 vs. Araport11
Match: AT3G12480.1 (| nuclear factor Y%2C subunit C11 | Chr3:3958065-3960278 FORWARD LENGTH=293 | 201606) HSP 1 Score: 62.3882 bits (150), Expect = 1.972e-11 Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 0 Query: 18 FPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFL 90 FP +R+KKIM D+DV +++ LVS+S ELFLQ L +++ ++ +E+ KTV+ H++ V+R+ DFL Sbjct: 9 FPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYN-VFDFL 80
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TL05|A0A1S3TL05_VIGRR (uncharacterized protein LOC106756506 OS=Vigna radiata var. radiata OX=3916 GN=LOC106756506 PE=4 SV=2) HSP 1 Score: 415.231 bits (1066), Expect = 3.279e-146 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 Query: 1 MIAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSPRVPSESQSPEAPSQTQLPLPVDES 215 MIAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSPRVPSESQSPEAPSQTQLPLPVDES Sbjct: 1 MIAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSPRVPSESQSPEAPSQTQLPLPVDES 215
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NH78|A0A4D6NH78_VIGUN (DNA polymerase epsilon subunit 4 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g93 PE=4 SV=1) HSP 1 Score: 323.939 bits (829), Expect = 1.710e-110 Identity = 169/188 (89.89%), Postives = 175/188 (93.09%), Query Frame = 0 Query: 4 MAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSP 191 MAEEEEN VS QLEFPKSRVKKI+TLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEH+RMAVKRHQPTRDFLLDDLPPPS +PAKPDGP +PVVRPKLD PP GTRRIDQFFRKP PQNP Q QSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPS+ QSPEVPS+ QSP Sbjct: 1 MAEEEENEVSAQLEFPKSRVKKIITLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHLRMAVKRHQPTRDFLLDDLPPPS---RPAKPDGPTQPVVRPKLDAPPPGTRRIDQFFRKPVPQNPAQVQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSQAQSPEVPSQVQSP 185
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|V7D3D5|V7D3D5_PHAVU (CBFD_NFYB_HMF domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G261300g PE=4 SV=1) HSP 1 Score: 296.975 bits (759), Expect = 1.331e-99 Identity = 158/211 (74.88%), Postives = 176/211 (83.41%), Query Frame = 0 Query: 4 MAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQAPEIPSQAQSPEVPSEPQSPEVPSETQSPRVPSESQSPEAPSQTQLPLPVDE 214 MAEEEENG SIQLEFPK RVKKIM LD+DVKRVSSEALFLVSRSTELFLQFLAEKSA VAIEKKRKTVNLEHVR+AV+RHQPTRDFLLDDLPPPS PAK + P +PV RPKLD PP GTRRIDQFFRKPEPQN +AQS ENPAQ AQAQ PEIP+QAQSPE+P++ Q PEV ++ QSP + +++ SPE P+Q Q P+PVDE Sbjct: 1 MAEEEENGASIQLEFPKGRVKKIMVLDEDVKRVSSEALFLVSRSTELFLQFLAEKSANVAIEKKRKTVNLEHVRIAVQRHQPTRDFLLDDLPPPSRPAKLGE---PTQPVSRPKLDAPPPGTRRIDQFFRKPEPQNLAKAQSTENPAQ-------AQAQPPEIPAQAQSPEIPAQAQPPEVAAQAQSPEIVAQALSPEIPAQAQSPVPVDE 201
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445HI05|A0A445HI05_GLYSO (CBFD_NFYB_HMF domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_037161 PE=4 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 1.435e-80 Identity = 131/164 (79.88%), Postives = 140/164 (85.37%), Query Frame = 0 Query: 2 IAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQA--QSPENPAQAQSSEIPAQAQA 163 + MA+EEENGVSIQLEFPK RVKKIM LDKDVKRVSSEALFLVSRSTELFLQFLAEKSA+VAIEKKRKTVNLEH+R+AVKRHQPTRDFLLD+LPPPS+ AKPD P +P RPKLD P GTR IDQFFRKPEP+N QA Q PENPAQAQS E P Q QA Sbjct: 1 MVMADEEENGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQPTRDFLLDELPPPSQ---AAKPDKPTQPAGRPKLDPAPRGTRCIDQFFRKPEPENTAQAPGQPPENPAQAQSPENPDQDQA 161
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0HSF8|A0A0R0HSF8_SOYBN (CBFD_NFYB_HMF domain-containing protein OS=Glycine max OX=3847 GN=100790556 PE=4 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 1.435e-80 Identity = 131/164 (79.88%), Postives = 140/164 (85.37%), Query Frame = 0 Query: 2 IAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQA--QSPENPAQAQSSEIPAQAQA 163 + MA+EEENGVSIQLEFPK RVKKIM LDKDVKRVSSEALFLVSRSTELFLQFLAEKSA+VAIEKKRKTVNLEH+R+AVKRHQPTRDFLLD+LPPPS+ AKPD P +P RPKLD P GTR IDQFFRKPEP+N QA Q PENPAQAQS E P Q QA Sbjct: 1 MVMADEEENGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQPTRDFLLDELPPPSQ---AAKPDKPTQPAGRPKLDPAPRGTRCIDQFFRKPEPENTAQAPGQPPENPAQAQSPENPDQDQA 161
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445FMA3|A0A445FMA3_GLYSO (CBFD_NFYB_HMF domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_047137 PE=4 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 2.674e-80 Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 0 Query: 2 IAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQA 163 + MAEEEE+GVSIQLEFPK RVKKIM LDKDVKRVSSEALFLVSRSTELFLQFLAEKSA+VAIEKKRKTVNLEH+R AVKRHQPTRDFLLD+LPPPS+ P KPD P +P RPKLD PP GTRRID FFRKPE +P QAQ PENPAQAQ E P Q QA Sbjct: 1 MVMAEEEESGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIREAVKRHQPTRDFLLDELPPPSQ---PTKPDRPTQPAGRPKLDPPPRGTRRIDLFFRKPELDDPAQAQPPENPAQAQPPENPDQDQA 159
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|I1MYF9|I1MYF9_SOYBN (CBFD_NFYB_HMF domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_18G007100 PE=4 SV=2) HSP 1 Score: 246.899 bits (629), Expect = 2.674e-80 Identity = 130/162 (80.25%), Postives = 138/162 (85.19%), Query Frame = 0 Query: 2 IAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQA 163 + MAEEEE+GVSIQLEFPK RVKKIM LDKDVKRVSSEALFLVSRSTELFLQFLAEKSA+VAIEKKRKTVNLEH+R AVKRHQPTRDFLLD+LPPPS+ P KPD P +P RPKLD PP GTRRID FFRKPE +P QAQ PENPAQAQ E P Q QA Sbjct: 1 MVMAEEEESGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIREAVKRHQPTRDFLLDELPPPSQ---PTKPDRPTQPAGRPKLDPPPRGTRRIDLFFRKPELDDPAQAQPPENPAQAQPPENPDQDQA 159
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2QRQ4|A0A0B2QRQ4_GLYSO (Dr1-associated corepressor like OS=Glycine soja OX=3848 GN=glysoja_025243 PE=4 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 4.465e-80 Identity = 130/160 (81.25%), Postives = 137/160 (85.62%), Query Frame = 0 Query: 4 MAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQSSEIPAQAQA 163 MAEEEE+GVSIQLEFPK RVKKIM LDKDVKRVSSEALFLVSRSTELFLQFLAEKSA+VAIEKKRKTVNLEH+R AVKRHQPTRDFLLD+LPPPS+ P KPD P +P RPKLD PP GTRRID FFRKPE +P QAQ PENPAQAQ E P Q QA Sbjct: 1 MAEEEESGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIREAVKRHQPTRDFLLDELPPPSQ---PTKPDRPTQPAGRPKLDPPPRGTRRIDLFFRKPELDDPAQAQPPENPAQAQPPENPDQDQA 157
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151U8Q7|A0A151U8Q7_CAJCA (Dr1-associated corepressor OS=Cajanus cajan OX=3821 GN=KK1_019877 PE=4 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.856e-72 Identity = 120/151 (79.47%), Postives = 127/151 (84.11%), Query Frame = 0 Query: 4 MAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQS 154 MAEEEEN S EFPK RVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSA+VAIEKKRKTVNLEH+R+AVKRHQPTRDFLLDDLPPPS+P KP K PA RPK D+P GTRRIDQFFRKPEP+NP QA+ AQAQS Sbjct: 1 MAEEEENAASTVSEFPKGRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVAIEKKRKTVNLEHIRVAVKRHQPTRDFLLDDLPPPSQPNKPDKHTTPA---ARPKSDKPLPGTRRIDQFFRKPEPENPAQAE-----AQAQS 143
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3NUG6|A0A2K3NUG6_TRIPR (Nuclear transcription factor Y subunit C-4-like protein OS=Trifolium pratense OX=57577 GN=L195_g003155 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.092e-58 Identity = 107/164 (65.24%), Postives = 124/164 (75.61%), Query Frame = 0 Query: 1 MIAMAEEEENGVSIQLEFPKSRVKKIMTLDKDVKRVSSEALFLVSRSTELFLQFLAEKSAKVAIEKKRKTVNLEHVRMAVKRHQPTRDFLLDDLPPPSEPAKPAKPDGPAKPVVRPKLDEPPSGTRRIDQFFRKPEPQNPTQAQSPENPAQAQ-SSEIPAQAQA 163 ++ MAEEEEN +SI+ EFPKSRVKKIMTLD+DVKRVSSEALFLVS+STELFLQ LAEKSA+VAIEKKRKTV LEH+R+AVKR++P DFLLD LP PSE K KP A RPK P GTRRIDQ FRK E Q +A+ E +AQ ++I AQ +A Sbjct: 2 VMVMAEEEENALSIEPEFPKSRVKKIMTLDEDVKRVSSEALFLVSKSTELFLQLLAEKSAEVAIEKKRKTVKLEHIRIAVKRNRPISDFLLDSLPMPSETTKSDKPVVVAD---RPK--SVPVGTRRIDQIFRKSEAQAQVEAE-VEAQVEAQVEAQIEAQVEA 159 The following BLAST results are available for this feature:
BLAST of rna-XM_014638967.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 1
BLAST of rna-XM_014638967.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 2
BLAST of rna-XM_014638967.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014638967.2_VrVC1973A-SNU_v1 ID=rna-XM_014638967.2_VrVC1973A-SNU_v1; Name=rna-XM_014638967.2; organism=Vigna radiata; type=mRNA; length=648bpback to top protein sequence of rna-XM_014638967.2_VrVC1973A-SNU_v1 >rna-XM_014638967.2_VrVC1973A-SNU_v1 ID=rna-XM_014638967.2_VrVC1973A-SNU_v1; Name=rna-XM_014638967.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=215bpback to top mRNA from alignment at chr02:22217206..22218218+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014638967.2_VrVC1973A-SNU_v1 ID=rna-XM_014638967.2_VrVC1973A-SNU_v1; Name=rna-XM_014638967.2; organism=Vigna radiata; type=mRNA; length=1013bp; location=Sequence derived from: chr02:22217206..22218218+ (Vigna radiataback to top Coding sequence (CDS) from alignment at chr02:22217206..22218218+ >rna-XM_014638967.2_VrVC1973A-SNU_v1 ID=rna-XM_014638967.2_VrVC1973A-SNU_v1; Name=rna-XM_014638967.2; organism=Vigna radiata; type=CDS; length=648bp; location=Sequence derived from: chr02:22217206..22218218+ (Vigna radiataback to top |