rna-XM_014639528.1

Transcript Overview


Name	rna-XM_014639528.1
Unique Name	rna-XM_014639528.1_VrVC1973A-SNU_v1
Type	mRNA
Organism	Vigna radiata (Mung bean, green gram)
Sequence length	495
Product	RING-H2 finger protein ATL64-like

References

External references for this mRNA


Database	Accession
GeneID	106756930
Genbank	XM_014639528.1

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr03	chromosome	chr03:5449239..5449733 +	Vigna radiata cv. VC1973A genome v6.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna radiata cv. VC1973A genome v6.0	2023-06-13
InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL	2023-06-20

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
anvrvL0557	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL0845	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL1142	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
caivrvL226	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
cavrvL193	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavrvL287	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
crvrvL223	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
pvvrvL022	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvrvL552	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
tifvrvL560	Vicia faba cv. Tiffany genome v1.0	Vicia faba
vrvvrvR145	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
vfhvrvL348	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvssR323	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vfhvrvL567	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvuaR218	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvvuR238	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvzwsR259	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuaR232	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvzwsR274	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuR254	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canvrvL176	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvrvL257	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvrvL502	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvrvL273	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvrvL344	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvrvL178		Cicer arietinum
carvrvL259		Cicer arietinum
ccavrvL214	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL304	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vrvvumR270	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvumR284	Vigna umbellata FF25 genome v1.0	Vigna umbellata
vrvvvaR278	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvstR255	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR283	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
pvfvrvL018	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvrvL511	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vrvvunR227	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vrvvunR240	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
evm.model.Chr01.1593	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_07833.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
rna-TanjilR_20465	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
Va03G073870.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vigun01g166450.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC106756930	gene-LOC106756930_VrVC1973A-SNU_v1	Vigna radiata	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_014639528.1-1	exon-XM_014639528.1-1_VrVC1973A-SNU_v1	Vigna radiata	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_014495014.1	cds-XP_014495014.1_VrVC1973A-SNU_v1	Vigna radiata	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_014639528.1_VrVC1973A-SNU_v1	rna-XM_014639528.1_VrVC1973A-SNU_v1	Vigna radiata	polypeptide
rna-XM_014639528.1_VrVC1973A-SNU_v1	rna-XM_014639528.1_VrVC1973A-SNU_v1-protein	Vigna radiata	polypeptide

Homology

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0C041|ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.812e-19
Identity = 47/153 (30.72%), Postives = 75/153 (49.02%), Query Frame = 0

Query:    2 NSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRR---VVRTHNAQRRDNTSCVKSE----GIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPV 147
            N  ++PLVI+I GI  +   +A Y  ++       T N       R   ++  ++ +R D       E    G+   ++ KI  F +   Q          +N   +CSICLG++ +++ +RLLP CNH FH  CID W   H+NCP+CR+ +
Sbjct:   55 NPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQN------GFKIN-GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKI 200

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8W571|ATL32_ARATH (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.854e-19
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 0

Query:   51 THNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTS------DCELALPMAS 159
            T   + R N    +  G+   ++   PVF+ S+ +    S I    ++++EC+ICL + ED + VRLLP CNH+FH  CID W   HA CPVCRS +T+      D +  +P+A+
Sbjct:   79 TRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVK---ESKIG---SKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLAA 187

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q6NKR1|ATL28_ARATH (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.440e-18
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 0

Query:    7 PLVISIVGIVCSTVA---MAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPM 157
            P+ + + G++   +     +++L   LL ++  T N QR     ++  H A   +NT      G+   I+   PVF  S+         A   N   EC+ICL ++ DED VRL+  C H FH +CID WF  H  CPVCR      CEL   M
Sbjct:   22 PVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLI--HVATPPENT------GLDPFIIRSFPVFHYSS---------ATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCR------CELDPGM 152

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LGA5|ATL31_ARATH (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 4.561e-17
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 0

Query:   53 NAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRS 145
               RR  T+   + G+  E +   P F  S  +T      A+      EC+ICL ++ED++ +RLLP C+HVFH  CI AW   H  CPVCR+
Sbjct:   81 GGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGAL------ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRT 167

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9SL78|ATL12_ARATH (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.884e-17
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 0

Query:   67 GIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELAL 155
            G+ ++ +  +P F  S  +          L Q +ECS+CL ++ED +++RLLP C H FH  CID W   HA CP+CR+ V  + +L++
Sbjct:   98 GLDKKAIESLPFFRFSALKG---------LKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSV 177

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LSW9|ATL16_ARATH (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.141e-17
Identity = 40/156 (25.64%), Postives = 78/156 (50.00%), Query Frame = 0

Query:    8 LVISIVGIVCSTVAMAVYLCIILL--RQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHL-----NQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALP 156
            L ++++GI+ +   +  Y   ++       R     R  L R  R         +  ++S G+ + ++  IP+F        +              ++ ECS+CL +++DE+ +R++P+C+H+FH  CID W  ++ANCP+CR+ V+  C+ + P
Sbjct:   37 LAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVS--CDTSFP 190

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q84W40|ATL11_ARATH (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.461e-16
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0

Query:   60 TSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRS 145
            T+  ++ G+   I+   P F  ST +T      A+      ECS+CL ++ED++ +RL+P C HVFH  CIDAW   H  CP+CR+
Sbjct:  108 TNRQQARGLDASIIETFPTFQYSTVKTLRIGKEAL------ECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRA 187

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q8L9T5|ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.534e-16
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 0

Query:   60 TSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTS 149
            TS V S G+   ++  +PVF+ S            H +  IEC++CL ++E+ +  R+LP+C H FH  CID WF  H+ CP+CRS V S
Sbjct:   87 TSVVASRGLDPNVIKSLPVFTFSD---------ETHKDP-IECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVES 166

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|O22255|ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.108e-16
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0

Query:   64 KSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPV 147
            + + + Q +L+KIP+F  S+                  CS+CL ++E+ED  RLLP C H FH  CID WF   + CP+CR+PV
Sbjct:   77 RDQALDQAVLDKIPIFVYSSKNPPPPEEKEE-------CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LZJ6|ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.626e-16
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0

Query:   49 VRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPV 147
            +R+  A R    S      +   +L KIP+F  S         +  H +   ECS+CL ++E++D  R+LP C HVFH  CID WF   ++CP+CR+PV
Sbjct:   69 LRSLAAARDPTQSSSSLSPLDPTVLEKIPIFVYS---------VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT4G17905.1 (| RING/U-box superfamily protein | Chr4:9948853-9949785 REVERSE LENGTH=310 | 201606)

HSP 1 Score: 85.5001 bits (210), Expect = 2.877e-20
Identity = 47/153 (30.72%), Postives = 75/153 (49.02%), Query Frame = 0

Query:    2 NSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRR---VVRTHNAQRRDNTSCVKSE----GIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPV 147
            N  ++PLVI+I GI  +   +A Y  ++       T N       R   ++  ++ +R D       E    G+   ++ KI  F +   Q          +N   +CSICLG++ +++ +RLLP CNH FH  CID W   H+NCP+CR+ +
Sbjct:   55 NPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQN------GFKIN-GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKI 200

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT4G40070.1 (| RING/U-box superfamily protein | Chr4:18576533-18577504 FORWARD LENGTH=323 | 201606)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-20
Identity = 43/115 (37.39%), Postives = 65/115 (56.52%), Query Frame = 0

Query:   51 THNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTS------DCELALPMAS 159
            T   + R N    +  G+   ++   PVF+ S+ +    S I    ++++EC+ICL + ED + VRLLP CNH+FH  CID W   HA CPVCRS +T+      D +  +P+A+
Sbjct:   79 TRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVK---ESKIG---SKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGDEDDGVPLAA 187

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT4G17905.2 (| RING/U-box superfamily protein | Chr4:9948853-9949863 REVERSE LENGTH=336 | 201606)

HSP 1 Score: 85.5001 bits (210), Expect = 3.855e-20
Identity = 47/153 (30.72%), Postives = 75/153 (49.02%), Query Frame = 0

Query:    2 NSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRR---VVRTHNAQRRDNTSCVKSE----GIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPV 147
            N  ++PLVI+I GI  +   +A Y  ++       T N       R   ++  ++ +R D       E    G+   ++ KI  F +   Q          +N   +CSICLG++ +++ +RLLP CNH FH  CID W   H+NCP+CR+ +
Sbjct:   81 NPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQN------GFKIN-GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKI 226

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT2G35420.1 (| RING/U-box superfamily protein | Chr2:14899715-14900479 REVERSE LENGTH=254 | 201606)

HSP 1 Score: 82.0333 bits (201), Expect = 2.496e-19
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 0

Query:    7 PLVISIVGIVCSTVA---MAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPM 157
            P+ + + G++   +     +++L   LL ++  T N QR     ++  H A   +NT      G+   I+   PVF  S+         A   N   EC+ICL ++ DED VRL+  C H FH +CID WF  H  CPVCR      CEL   M
Sbjct:   22 PVTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLI--HVATPPENT------GLDPFIIRSFPVFHYSS---------ATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCR------CELDPGM 152

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT5G27420.1 (| carbon/nitrogen insensitive 1 | Chr5:9684119-9685225 FORWARD LENGTH=368 | 201606)

HSP 1 Score: 80.1073 bits (196), Expect = 4.666e-18
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 0

Query:   53 NAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRS 145
               RR  T+   + G+  E +   P F  S  +T      A+      EC+ICL ++ED++ +RLLP C+HVFH  CI AW   H  CPVCR+
Sbjct:   81 GGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGAL------ECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRT 167

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT2G20030.1 (| RING/U-box superfamily protein | Chr2:8647813-8648985 FORWARD LENGTH=390 | 201606)

HSP 1 Score: 80.1073 bits (196), Expect = 4.997e-18
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 0

Query:   67 GIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELAL 155
            G+ ++ +  +P F  S  +          L Q +ECS+CL ++ED +++RLLP C H FH  CID W   HA CP+CR+ V  + +L++
Sbjct:   98 GLDKKAIESLPFFRFSALKG---------LKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSV 177

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT5G43420.1 (| RING/U-box superfamily protein | Chr5:17451790-17452917 FORWARD LENGTH=375 | 201606)

HSP 1 Score: 79.7221 bits (195), Expect = 7.306e-18
Identity = 40/156 (25.64%), Postives = 78/156 (50.00%), Query Frame = 0

Query:    8 LVISIVGIVCSTVAMAVYLCIILL--RQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHL-----NQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALP 156
            L ++++GI+ +   +  Y   ++       R     R  L R  R         +  ++S G+ + ++  IP+F        +              ++ ECS+CL +++DE+ +R++P+C+H+FH  CID W  ++ANCP+CR+ V+  C+ + P
Sbjct:   37 LAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVS--CDTSFP 190

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT1G72200.1 (| RING/U-box superfamily protein | Chr1:27169935-27171149 REVERSE LENGTH=404 | 201606)

HSP 1 Score: 78.9518 bits (193), Expect = 1.494e-17
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0

Query:   60 TSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRS 145
            T+  ++ G+   I+   P F  ST +T      A+      ECS+CL ++ED++ +RL+P C HVFH  CIDAW   H  CP+CR+
Sbjct:  108 TNRQQARGLDASIIETFPTFQYSTVKTLRIGKEAL------ECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRA 187

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT3G16720.1 (| TOXICOS EN LEVADURA 2 | Chr3:5692880-5693794 FORWARD LENGTH=304 | 201606)

HSP 1 Score: 78.1814 bits (191), Expect = 1.569e-17
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 0

Query:   60 TSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTS 149
            TS V S G+   ++  +PVF+ S            H +  IEC++CL ++E+ +  R+LP+C H FH  CID WF  H+ CP+CRS V S
Sbjct:   87 TSVVASRGLDPNVIKSLPVFTFSD---------ETHKDP-IECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVES 166

[Close]

BLAST of rna-XM_014639528.1 vs. Araport11
Match: AT2G47560.1 (| RING/U-box superfamily protein | Chr2:19511934-19512617 REVERSE LENGTH=227 | 201606)

HSP 1 Score: 76.6406 bits (187), Expect = 2.156e-17
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0

Query:   64 KSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPV 147
            + + + Q +L+KIP+F  S+                  CS+CL ++E+ED  RLLP C H FH  CID WF   + CP+CR+PV
Sbjct:   77 RDQALDQAVLDKIPIFVYSSKNPPPPEEKEE-------CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPV 153

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TML5|A0A1S3TML5_VIGRR (RING-type E3 ubiquitin transferase OS=Vigna radiata var. radiata OX=3916 GN=LOC106756930 PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.328e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query:    1 MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNADA 164
            MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNADA
Sbjct:    1 MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNADA 164

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6M9L1|A0A4D6M9L1_VIGUN (RING-type E3 ubiquitin transferase OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2700 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.082e-78
Identity = 127/164 (77.44%), Postives = 134/164 (81.71%), Query Frame = 0

Query:    1 MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNADA 164
            MNSYVTPLV+S  GIVCSTVA+AVY CIILLR  VRTH               AQRRDNT+CVKSEGIQQEILNKI VFSISTTQT S+ AIAIHL QNIECSICLGQWED +VVRLLP CNHVFHKSC+DAWFM HANCPVCRSP+TSDCEL L MASQN DA
Sbjct:    1 MNSYVTPLVLSTAGIVCSTVAIAVYHCIILLRHFVRTHT--------------AQRRDNTTCVKSEGIQQEILNKIKVFSISTTQTSSTGAIAIHLGQNIECSICLGQWEDYNVVRLLPLCNHVFHKSCVDAWFMDHANCPVCRSPITSDCELTLAMASQNGDA 150

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6A5M7Y2|A0A6A5M7Y2_LUPAL (RING-type E3 ubiquitin transferase OS=Lupinus albus OX=3870 GN=Lal_00018187 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-31
Identity = 74/164 (45.12%), Postives = 93/164 (56.71%), Query Frame = 0

Query:    1 MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRD-NTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNAD 163
            M SY TPL I + GI+ ST+ +A Y   I  +   R         RR  R +N    +  +SC    G+Q EILNKIPV + S           I L+Q IECSICLG+ ED D+VR+LPSCNH FH  CIDAWF  H +CP CRS +T D E ++ M   N+D
Sbjct:    1 MGSYATPLAIGVSGIIISTLLLAAYH-FIFFKCCSRD--------RRAPRNNNGIHGNIKSSCC---GVQDEILNKIPVITYSIN--------LIGLDQ-IECSICLGELEDGDLVRVLPSCNHAFHIPCIDAWFKEHESCPFCRSEITRDIEESM-MMPNNSD 142

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7HFA0|A0A1J7HFA0_LUPAN (RING-type E3 ubiquitin transferase OS=Lupinus angustifolius OX=3871 GN=TanjilG_20465 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.641e-28
Identity = 70/164 (42.68%), Postives = 91/164 (55.49%), Query Frame = 0

Query:    1 MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRD-NTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMASQNAD 163
            M +Y TPL I + GI+ ST+ +A Y  +         H +Q        R  N    D N+SC    G+Q+EIL KIPV + S           I L+Q  ECSICLG+ ED D++RLLPSCNH FH  CID+WF  H +CP CRS +T D E ++ M S + D
Sbjct:   11 MGTYGTPLAIGLSGIIISTLLLAAYHFLFFKCCSRYRHWSQE-------RNDNRNHSDINSSCC---GVQEEILKKIPVIAYSIN--------LIGLDQG-ECSICLGELEDGDLLRLLPSCNHAFHIPCIDSWFKEHESCPFCRSQITCDIEESI-MPSNSED 154

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1J6ISB8|A0A1J6ISB8_NICAT (RING-type E3 ubiquitin transferase (Fragment) OS=Nicotiana attenuata OX=49451 GN=ATL52_1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.274e-27
Identity = 58/146 (39.73%), Postives = 89/146 (60.96%), Query Frame = 0

Query:    3 SYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVT 148
            S+  PL++S++GI C+ +A+ +Y   IL +  +R    Q I           QR ++ +   ++GI Q+IL KIP+ + ++            ++QN ECS+CLG+ EDE++VRLLP+C H FH  CID WF+ HA+CPVCRS +T
Sbjct:   16 SFFAPLLVSMIGIFCTALALVIY-HFILTKYCLRRSTQQTI-------DSTVQRPNSETHNLAKGIDQKILEKIPILAFNSILKNG----LFRVDQN-ECSVCLGELEDEEMVRLLPNCRHAFHVPCIDQWFVAHASCPVCRSSIT 148

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1U7YI59|A0A1U7YI59_NICSY (RING-type E3 ubiquitin transferase OS=Nicotiana sylvestris OX=4096 GN=LOC104247341 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.832e-27
Identity = 62/149 (41.61%), Postives = 90/149 (60.40%), Query Frame = 0

Query:    3 SYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRI---LLRRVVRTHNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVT 148
            S+  PL++S++GI C+ +A+ +Y   IL +  +R    Q I   +LR    THN           ++G+ Q+IL KIP+ + ++            ++QN ECSICLG+ EDE++VRLLP+C H FH  CID WF+ HA+CPVCRS VT
Sbjct:   16 SFFAPLLVSMIGIFCTALALVIY-HFILTKYCLRRSTQQTIHSTVLRPNSETHNL----------AKGVDQKILEKIPILAYNSILKNG----LFRVDQN-ECSICLGELEDEEMVRLLPNCRHAFHVPCIDQWFVVHASCPVCRSSVT 148

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A314ZNG2|A0A314ZNG2_PRUYE (RING-type E3 ubiquitin transferase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_35083 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.991e-27
Identity = 65/162 (40.12%), Postives = 94/162 (58.02%), Query Frame = 0

Query:    2 NSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTS----CVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMAS 159
             SY TPL+IS+ GIV +T+A+  Y  I++           R  LRR  R    Q + + S      +S G+ +++L+ IP+ S ST + C        ++Q+ EC ICLG+ ED D+VRLLP+C HVFH  CI+ WF+ H NCPVCR+       +A+P+AS
Sbjct:   15 GSYFTPLLISMGGIVSTTLAIVAYHFIVV-----------RFCLRRRQRLMQMQLQASLSQQPPISQSNGVDEKVLSSIPILSYST-KNCE----LFRVDQS-ECVICLGELEDGDMVRLLPNCKHVFHNPCIEKWFLGHTNCPVCRA------AIAVPIAS 153

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6P5TUD2|A0A6P5TUD2_PRUAV (RING-type E3 ubiquitin transferase OS=Prunus avium OX=42229 GN=LOC110770843 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.364e-26
Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 0

Query:    2 NSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTS----CVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMAS 159
             SY TPL+IS+ GIV +T+A+  Y  I++           R  LRR  R    Q + + S      +S G+ +++L+ IP+ S ST + C        ++Q+ EC ICLG+ ED D+VRLLP+C HVFH  CID WF+ H NCPVCR+ +      A+P+AS
Sbjct:   15 GSYFTPLLISMGGIVSTTLAIVAYHFIVV-----------RFCLRRRQRLMQMQLQASLSQQPPISQSNGVDEKVLSSIPILSYST-KNCE----LFRVDQS-ECVICLGELEDGDMVRLLPNCKHVFHNPCIDKWFLGHTNCPVCRAAI------AVPIAS 153

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J5Y2H7|A0A6J5Y2H7_PRUAR (RING-type E3 ubiquitin transferase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS44539 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.489e-26
Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 0

Query:    2 NSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTS----CVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMAS 159
             SY TPL+IS+ GIV +T+A+  Y  I++           R  LRR  R    Q + + S      +S G+ +++L+ IP  S ST ++C        ++Q+ EC ICLG+ ED D+VRLLP+C HVFH  CID WF+ H NCPVCR+ +      A+P+AS
Sbjct:   15 GSYFTPLLISMGGIVSTTLAIVAYHFIVV-----------RFCLRRRQRLMQMQLQASLSQQPPISQSNGVDEKVLSSIPTLSYST-KSCE----LFRVDQS-ECVICLGELEDGDMVRLLPNCKHVFHNPCIDKWFLGHTNCPVCRAAI------AVPIAS 153

[Close]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J5VII3|A0A6J5VII3_PRUAR (RING-type E3 ubiquitin transferase OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45196 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.526e-26
Identity = 66/162 (40.74%), Postives = 94/162 (58.02%), Query Frame = 0

Query:    2 NSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVRTHNAQRRDNTS----CVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNIECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSDCELALPMAS 159
             SY TPL+IS+ GIV +T+A+  Y  I++           R  LRR  R    Q + + S      +S G+ +++L+ IP  S ST ++C        ++Q+ EC ICLG+ ED D+VRLLP+C HVFH  CID WF+ H NCPVCR+ +      A+P+AS
Sbjct:   15 GSYFTPLLISMGGIVSTTLAIVAYHFIVV-----------RFCLRRRQRLMQMQLQASLSQQPPISQSNGVDEKVLSSIPTLSYST-KSCE----LFRVDQS-ECVICLGELEDGDMVRLLPNCKHVFHNPCIDKWFLGHTNCPVCRAAI------AVPIAS 153

The following BLAST results are available for this feature:

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_014639528.1 vs. Araport11
BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL

BLAST of rna-XM_014639528.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
sp\|P0C041\|ATL53_ARATH	2.812e-19	30.72	Putative RING-H2 finger protein ATL53 OS=Arabidops...	[more]
sp\|Q8W571\|ATL32_ARATH	2.854e-19	37.39	RING-H2 finger protein ATL32 OS=Arabidopsis thalia...	[more]
sp\|Q6NKR1\|ATL28_ARATH	2.440e-18	33.12	RING-H2 finger protein ATL28 OS=Arabidopsis thalia...	[more]
sp\|Q8LGA5\|ATL31_ARATH	4.561e-17	38.71	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis t...	[more]
sp\|Q9SL78\|ATL12_ARATH	4.884e-17	37.08	Putative RING-H2 finger protein ATL12 OS=Arabidops...	[more]
sp\|Q9LSW9\|ATL16_ARATH	7.141e-17	25.64	RING-H2 finger protein ATL16 OS=Arabidopsis thalia...	[more]
sp\|Q84W40\|ATL11_ARATH	1.461e-16	39.53	RING-H2 finger protein ATL11 OS=Arabidopsis thalia...	[more]
sp\|Q8L9T5\|ATL2_ARATH	1.534e-16	40.00	RING-H2 finger protein ATL2 OS=Arabidopsis thalian...	[more]
sp\|O22255\|ATL64_ARATH	2.108e-16	39.29	RING-H2 finger protein ATL64 OS=Arabidopsis thalia...	[more]
sp\|Q9LZJ6\|ATL5_ARATH	3.626e-16	37.37	RING-H2 finger protein ATL5 OS=Arabidopsis thalian...	[more]

BLAST of rna-XM_014639528.1 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 10


Match Name	E-value	Identity	Description
AT4G17905.1	2.877e-20	30.72	\| RING/U-box superfamily protein \| Chr4:9948853-99...	[more]
AT4G40070.1	2.920e-20	37.39	\| RING/U-box superfamily protein \| Chr4:18576533-1...	[more]
AT4G17905.2	3.855e-20	30.72	\| RING/U-box superfamily protein \| Chr4:9948853-99...	[more]
AT2G35420.1	2.496e-19	33.12	\| RING/U-box superfamily protein \| Chr2:14899715-1...	[more]
AT5G27420.1	4.666e-18	38.71	\| carbon/nitrogen insensitive 1 \| Chr5:9684119-968...	[more]
AT2G20030.1	4.997e-18	37.08	\| RING/U-box superfamily protein \| Chr2:8647813-86...	[more]
AT5G43420.1	7.306e-18	25.64	\| RING/U-box superfamily protein \| Chr5:17451790-1...	[more]
AT1G72200.1	1.494e-17	39.53	\| RING/U-box superfamily protein \| Chr1:27169935-2...	[more]
AT3G16720.1	1.569e-17	40.00	\| TOXICOS EN LEVADURA 2 \| Chr3:5692880-5693794 FOR...	[more]
AT2G47560.1	2.156e-17	39.29	\| RING/U-box superfamily protein \| Chr2:19511934-1...	[more]

BLAST of rna-XM_014639528.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A1S3TML5\|A0A1S3TML5_VIGRR	2.328e-116	100.00	RING-type E3 ubiquitin transferase OS=Vigna radiat...	[more]
tr\|A0A4D6M9L1\|A0A4D6M9L1_VIGUN	2.082e-78	77.44	RING-type E3 ubiquitin transferase OS=Vigna unguic...	[more]
tr\|A0A6A5M7Y2\|A0A6A5M7Y2_LUPAL	1.389e-31	45.12	RING-type E3 ubiquitin transferase OS=Lupinus albu...	[more]
tr\|A0A1J7HFA0\|A0A1J7HFA0_LUPAN	1.641e-28	42.68	RING-type E3 ubiquitin transferase OS=Lupinus angu...	[more]
tr\|A0A1J6ISB8\|A0A1J6ISB8_NICAT	1.274e-27	39.73	RING-type E3 ubiquitin transferase (Fragment) OS=N...	[more]
tr\|A0A1U7YI59\|A0A1U7YI59_NICSY	1.832e-27	41.61	RING-type E3 ubiquitin transferase OS=Nicotiana sy...	[more]
tr\|A0A314ZNG2\|A0A314ZNG2_PRUYE	4.991e-27	40.12	RING-type E3 ubiquitin transferase OS=Prunus yedoe...	[more]
tr\|A0A6P5TUD2\|A0A6P5TUD2_PRUAV	1.364e-26	40.74	RING-type E3 ubiquitin transferase OS=Prunus avium...	[more]
tr\|A0A6J5Y2H7\|A0A6J5Y2H7_PRUAR	1.489e-26	40.74	RING-type E3 ubiquitin transferase OS=Prunus armen...	[more]
tr\|A0A6J5VII3\|A0A6J5VII3_PRUAR	1.526e-26	40.74	RING-type E3 ubiquitin transferase OS=Prunus armen...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 101..144 e-value: 7.9E-14 score: 51.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 102..144 score: 12.474524
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 50..150 e-value: 6.0E-20 score: 72.7
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 3..148
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 101..144 e-value: 1.47629E-16 score: 67.2991
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 93..150

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr03:5449239..5449733+
coding sequence from alignment at chr03:5449239..5449733+

mRNA sequence

>rna-XM_014639528.1_VrVC1973A-SNU_v1 ID=rna-XM_014639528.1_VrVC1973A-SNU_v1; Name=rna-XM_014639528.1; organism=Vigna radiata; type=mRNA; length=495bp
ATGAACTCCTATGTCACCCCTCTTGTTATCTCCATTGTTGGCATAGTTTG
TTCTACTGTGGCAATGGCTGTGTACCTCTGCATAATCCTCTTGAGGCAAG
TCGTTAGAACTCACAATGCACAAAGAATCCTCTTGAGGCGTGTTGTCAGA
ACTCACAATGCACAACGCAGGGACAACACATCTTGTGTAAAGAGTGAAGG
GATCCAACAAGAAATCCTTAACAAAATCCCAGTTTTCTCAATCTCTACAA
CACAAACATGTAGTAGTAGTGCCATTGCCATTCATTTGAACCAAAATATT
GAATGCTCCATTTGCCTTGGACAGTGGGAAGATGAGGATGTGGTGCGGTT
GTTGCCTTCTTGTAATCATGTTTTTCACAAATCCTGCATTGATGCATGGT
TCATGCACCATGCCAATTGCCCAGTTTGTCGATCACCAGTCACTTCTGAC
TGTGAGTTAGCGTTGCCAATGGCTTCACAAAATGCTGATGCCTAA

protein sequence of rna-XM_014639528.1_VrVC1973A-SNU_v1

>rna-XM_014639528.1_VrVC1973A-SNU_v1 ID=rna-XM_014639528.1_VrVC1973A-SNU_v1; Name=rna-XM_014639528.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=164bp
MNSYVTPLVISIVGIVCSTVAMAVYLCIILLRQVVRTHNAQRILLRRVVR
THNAQRRDNTSCVKSEGIQQEILNKIPVFSISTTQTCSSSAIAIHLNQNI
ECSICLGQWEDEDVVRLLPSCNHVFHKSCIDAWFMHHANCPVCRSPVTSD
CELALPMASQNADA

mRNA from alignment at chr03:5449239..5449733+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_014639528.1_VrVC1973A-SNU_v1 ID=rna-XM_014639528.1_VrVC1973A-SNU_v1; Name=rna-XM_014639528.1; organism=Vigna radiata; type=mRNA; length=495bp; location=Sequence derived from: chr03:5449239..5449733+ (Vigna radiata
ATGAACTCCTATGTCACCCCTCTTGTTATCTCCATTGTTGGCATAGTTTG
TTCTACTGTGGCAATGGCTGTGTACCTCTGCATAATCCTCTTGAGGCAAG
TCGTTAGAACTCACAATGCACAAAGAATCCTCTTGAGGCGTGTTGTCAGA
ACTCACAATGCACAACGCAGGGACAACACATCTTGTGTAAAGAGTGAAGG
GATCCAACAAGAAATCCTTAACAAAATCCCAGTTTTCTCAATCTCTACAA
CACAAACATGTAGTAGTAGTGCCATTGCCATTCATTTGAACCAAAATATT
GAATGCTCCATTTGCCTTGGACAGTGGGAAGATGAGGATGTGGTGCGGTT
GTTGCCTTCTTGTAATCATGTTTTTCACAAATCCTGCATTGATGCATGGT
TCATGCACCATGCCAATTGCCCAGTTTGTCGATCACCAGTCACTTCTGAC
TGTGAGTTAGCGTTGCCAATGGCTTCACAAAATGCTGATGCCTAA

Coding sequence (CDS) from alignment at chr03:5449239..5449733+

>rna-XM_014639528.1_VrVC1973A-SNU_v1 ID=rna-XM_014639528.1_VrVC1973A-SNU_v1; Name=rna-XM_014639528.1; organism=Vigna radiata; type=CDS; length=495bp; location=Sequence derived from: chr03:5449239..5449733+ (Vigna radiata
ATGAACTCCTATGTCACCCCTCTTGTTATCTCCATTGTTGGCATAGTTTG
TTCTACTGTGGCAATGGCTGTGTACCTCTGCATAATCCTCTTGAGGCAAG
TCGTTAGAACTCACAATGCACAAAGAATCCTCTTGAGGCGTGTTGTCAGA
ACTCACAATGCACAACGCAGGGACAACACATCTTGTGTAAAGAGTGAAGG
GATCCAACAAGAAATCCTTAACAAAATCCCAGTTTTCTCAATCTCTACAA
CACAAACATGTAGTAGTAGTGCCATTGCCATTCATTTGAACCAAAATATT
GAATGCTCCATTTGCCTTGGACAGTGGGAAGATGAGGATGTGGTGCGGTT
GTTGCCTTCTTGTAATCATGTTTTTCACAAATCCTGCATTGATGCATGGT
TCATGCACCATGCCAATTGCCCAGTTTGTCGATCACCAGTCACTTCTGAC
TGTGAGTTAGCGTTGCCAATGGCTTCACAAAATGCTGATGCCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR044675	RING1-like

Search form

rna-XM_014639528.1