rna-XM_014645320.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014645320.2 vs. Araport11
Match: AT4G32860.1 (| Avr9/Cf-9 rapidly elicited protein | Chr4:15856710-15857309 REVERSE LENGTH=199 | 201606) HSP 1 Score: 87.0409 bits (214), Expect = 1.896e-21 Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 0 Query: 44 VMKRGKNIGKALNDVVVRHHQALTCRP---RDAHVSFVSP----LEYQFSCSGSPPRLSHA---SRRKLSPPSSSRSPAHRAVRMCR-------GGGDGIIERRVKIAGSAASMLNDVVE-----KDFHVDEAAEEFIARFYRELRLQKWL 172 + KRGK + K+LN+ V H +TCRP +D SF+SP LEY+FSCS +PPR S+A S+ + S S +R ++ R D I +R V AA++ DV + HVD AAEEFI FYR+LRLQKW+ Sbjct: 49 LAKRGKILRKSLNEAVSTSHSRITCRPSDHQDVRSSFISPVPLQLEYEFSCSSTPPRRSYATTVSKGRRSNGSHNRPLINKRQRQAYIRYNTLPKVRDSIWDRHV-----AAAVFPDVASSTGTMESCHVDRAAEEFIQSFYRQLRLQKWM 194
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U478|A0A1S3U478_VIGRR (uncharacterized protein LOC106761748 OS=Vigna radiata var. radiata OX=3916 GN=LOC106761748 PE=4 SV=1) HSP 1 Score: 367.081 bits (941), Expect = 1.996e-128 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 Query: 1 MKQTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCRGGGDGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 MKQTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCRGGGDGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC Sbjct: 1 MKQTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCRGGGDGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3RCM7|A0A0S3RCM7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.02G102700 PE=4 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 1.780e-125 Identity = 172/176 (97.73%), Postives = 175/176 (99.43%), Query Frame = 0 Query: 1 MKQTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCRGGGDGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 MK+THF+LPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRD HVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCRGGG+GIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC Sbjct: 1 MKRTHFSLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDPHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCRGGGEGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6NRP3|A0A4D6NRP3_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g3061 PE=4 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 2.822e-122 Identity = 172/178 (96.63%), Postives = 176/178 (98.88%), Query Frame = 0 Query: 1 MKQTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPP-RLSHASRRKLSPPSSSRSPA-HRAVRMCRGGGDGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 MK+THFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGK+IGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPP RLSHASRRKLSPPSSSRSPA HRAVRMCRGGGDGI+ERRVKIAGSAASMLNDVVEK+FHVDEAAEEFIARFYRELRLQKWLDHYC Sbjct: 1 MKRTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKSIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRRLSHASRRKLSPPSSSRSPAHHRAVRMCRGGGDGIVERRVKIAGSAASMLNDVVEKEFHVDEAAEEFIARFYRELRLQKWLDHYC 178
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|V7AX99|V7AX99_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G111200g PE=4 SV=1) HSP 1 Score: 341.273 bits (874), Expect = 3.350e-118 Identity = 165/178 (92.70%), Postives = 170/178 (95.51%), Query Frame = 0 Query: 1 MKQTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCR--GGGDGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 MK+THFTLPHVADITCMDPNR PLVPEKLSKTVRFLGFFIQNDVMK G+NIGKALN+VVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHA RRKLSPPSS RSPAHRAVRMCR GGD I+ERRVKIAGSAAS+LNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC Sbjct: 1 MKRTHFTLPHVADITCMDPNRQPLVPEKLSKTVRFLGFFIQNDVMKWGRNIGKALNEVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHAGRRKLSPPSSRRSPAHRAVRMCRDGAGGDSIVERRVKIAGSAASLLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 178
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445KXS5|A0A445KXS5_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_009161 PE=4 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 9.030e-102 Identity = 152/196 (77.55%), Postives = 160/196 (81.63%), Query Frame = 0 Query: 1 MKQ---THFTLP-HVADITCMDPNRPPLVPEKLSKTVRFLGFFIQN------------DVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSS--RSPAHRAVRMCRGGG--DGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 MKQ THF LP HV DITCMDPNRPPLV EK+ KTVRF+GFF+QN DVMKRGKNIGKALND+V RHHQALTCRPRDAHV+FVSPLEYQFSCSGSPPR SHA RRKLSP S++ RSP HRAVRMCRGGG DG IERRVKI S ASM ND EKDFHVDEAAEEFIARFYR+LRLQKWLDHYC Sbjct: 2 MKQSRDTHFPLPQHVTDITCMDPNRPPLVAEKVFKTVRFIGFFLQNGVSKSKVFHDVQDVMKRGKNIGKALNDIVARHHQALTCRPRDAHVAFVSPLEYQFSCSGSPPRTSHAGRRKLSPASAAVRRSPGHRAVRMCRGGGAADGTIERRVKITDSVASMFNDTAEKDFHVDEAAEEFIARFYRDLRLQKWLDHYC 197
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|K7KIY0|K7KIY0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G085800 PE=4 SV=1) HSP 1 Score: 300.442 bits (768), Expect = 9.030e-102 Identity = 152/196 (77.55%), Postives = 160/196 (81.63%), Query Frame = 0 Query: 1 MKQ---THFTLP-HVADITCMDPNRPPLVPEKLSKTVRFLGFFIQN------------DVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSS--RSPAHRAVRMCRGGG--DGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 MKQ THF LP HV DITCMDPNRPPLV EK+ KTVRF+GFF+QN DVMKRGKNIGKALND+V RHHQALTCRPRDAHV+FVSPLEYQFSCSGSPPR SHA RRKLSP S++ RSP HRAVRMCRGGG DG IERRVKI S ASM ND EKDFHVDEAAEEFIARFYR+LRLQKWLDHYC Sbjct: 2 MKQSRDTHFPLPQHVTDITCMDPNRPPLVAEKVFKTVRFIGFFLQNGVSKSKVFHDVQDVMKRGKNIGKALNDIVARHHQALTCRPRDAHVAFVSPLEYQFSCSGSPPRTSHAGRRKLSPASAAVRRSPGHRAVRMCRGGGAADGTIERRVKITDSVASMFNDTAEKDFHVDEAAEEFIARFYRDLRLQKWLDHYC 197
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445K6S9|A0A445K6S9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_014141 PE=4 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 1.783e-96 Identity = 151/193 (78.24%), Postives = 156/193 (80.83%), Query Frame = 0 Query: 5 HFTLP-HVADITCMDPNRPPLVPEKLSKTVRFLGFFIQN-------------DVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRL-SHASRRKLS--PPSSSRSPAHRAVRMCR---GGGDGIIERRVKIAGSAASMLN-DVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 HF LP HVADITCMDPNRPPLV EK+ KTVRF+GFFIQN DVMKRGKNIGKALNDVV RHHQALTCRPRDAHV+FVSPLEYQFSCSGSPPRL SHA RR LS P+ RSPAHRAVRMCR GG DG I RRVKI GSAASM N D EKDFHVDEAAEEFIARFYR+LRLQKWLDHYC Sbjct: 8 HFPLPQHVADITCMDPNRPPLVAEKVFKTVRFIGFFIQNGVSKSKVVVHDMQDVMKRGKNIGKALNDVVARHHQALTCRPRDAHVAFVSPLEYQFSCSGSPPRLSSHAGRRNLSQASPAVRRSPAHRAVRMCRGGDGGADGTIHRRVKITGSAASMFNVDRAEKDFHVDEAAEEFIARFYRDLRLQKWLDHYC 200
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|I1K9F8|I1K9F8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102666753 PE=4 SV=2) HSP 1 Score: 287.345 bits (734), Expect = 1.783e-96 Identity = 151/193 (78.24%), Postives = 156/193 (80.83%), Query Frame = 0 Query: 5 HFTLP-HVADITCMDPNRPPLVPEKLSKTVRFLGFFIQN-------------DVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRL-SHASRRKLS--PPSSSRSPAHRAVRMCR---GGGDGIIERRVKIAGSAASMLN-DVVEKDFHVDEAAEEFIARFYRELRLQKWLDHYC 176 HF LP HVADITCMDPNRPPLV EK+ KTVRF+GFFIQN DVMKRGKNIGKALNDVV RHHQALTCRPRDAHV+FVSPLEYQFSCSGSPPRL SHA RR LS P+ RSPAHRAVRMCR GG DG I RRVKI GSAASM N D EKDFHVDEAAEEFIARFYR+LRLQKWLDHYC Sbjct: 8 HFPLPQHVADITCMDPNRPPLVAEKVFKTVRFIGFFIQNGVSKSKVVVHDMQDVMKRGKNIGKALNDVVARHHQALTCRPRDAHVAFVSPLEYQFSCSGSPPRLSSHAGRRNLSQASPAVRRSPAHRAVRMCRGGDGGADGTIHRRVKITGSAASMFNVDRAEKDFHVDEAAEEFIARFYRDLRLQKWLDHYC 200
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|A0A151RK55|A0A151RK55_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_035620 PE=4 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 4.238e-73 Identity = 125/174 (71.84%), Postives = 132/174 (75.86%), Query Frame = 0 Query: 4 THFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQNDVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHASRRKLSPPSSSRSPAHRAVRMCRGGGDGIIERRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDH-YC 176 THF LPHVADITCMDP+R PLV EKL KTVR LG+ +Q D++KRGK+IGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGS S S AHR RMCRG G G IERRVKI+GS EKDF VDEAAEEFIARFYRELRLQKWLDH YC Sbjct: 7 THFPLPHVADITCMDPSRAPLVAEKLCKTVRLLGYDMQ-DMVKRGKSIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGS---------PPRRRRLSPPSAAHRPPRMCRGDG-GAIERRVKISGSMVKQ----AEKDFEVDEAAEEFIARFYRELRLQKWLDHQYC 165
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1J7H889|A0A1J7H889_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_28499 PE=4 SV=1) HSP 1 Score: 218.779 bits (556), Expect = 2.185e-69 Identity = 120/202 (59.41%), Postives = 139/202 (68.81%), Query Frame = 0 Query: 2 KQTHFTLPHVADITCMDPNRPPLVPEKLSKTVRFLGFFIQN------------DVMKRGKNIGKALNDVVVRHHQALTCRPRDAHVSFVSPLEYQFSCSGSPPRLSHA-SRRKLSPPSS--------SRSPAHRAVRMCRGG-GDGIIE------RRVKIAGSAASMLNDVVEKDFHVDEAAEEFIARFYRELRLQKWLDHY 175 K+ H LP VADITCMD PP+V EK+ KTVR LGF IQN DVM+RGKNIGKALN+VV RHH+A+TCR RD H+SFVSPLEYQFSCSGSPPR S A S+R+LSP ++ S H VRMC G D ++E R VKI GS AS+L D EK+FHVDE AE+FI +FYRELRLQKWLDH+ Sbjct: 5 KEKHLLLPKVADITCMDQIPPPVVAEKVCKTVRLLGFLIQNGVSKSKVINDMHDVMQRGKNIGKALNNVVARHHEAITCRSRDTHMSFVSPLEYQFSCSGSPPRPSRALSKRRLSPATAVNTRHGRDSPGHGHGVVRMCGGNSNDTLVEHYRPVRRHVKITGSGASLLRD-SEKEFHVDEEAEKFIEKFYRELRLQKWLDHH 205 The following BLAST results are available for this feature:
BLAST of rna-XM_014645320.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_014645320.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 1
BLAST of rna-XM_014645320.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014645320.2_VrVC1973A-SNU_v1 ID=rna-XM_014645320.2_VrVC1973A-SNU_v1; Name=rna-XM_014645320.2; organism=Vigna radiata; type=mRNA; length=531bpback to top protein sequence of rna-XM_014645320.2_VrVC1973A-SNU_v1 >rna-XM_014645320.2_VrVC1973A-SNU_v1 ID=rna-XM_014645320.2_VrVC1973A-SNU_v1; Name=rna-XM_014645320.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=176bpback to top mRNA from alignment at chr05:16532661..16533620- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014645320.2_VrVC1973A-SNU_v1 ID=rna-XM_014645320.2_VrVC1973A-SNU_v1; Name=rna-XM_014645320.2; organism=Vigna radiata; type=mRNA; length=960bp; location=Sequence derived from: chr05:16532661..16533620- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr05:16532661..16533620- >rna-XM_014645320.2_VrVC1973A-SNU_v1 ID=rna-XM_014645320.2_VrVC1973A-SNU_v1; Name=rna-XM_014645320.2; organism=Vigna radiata; type=CDS; length=531bp; location=Sequence derived from: chr05:16532661..16533620- (Vigna radiataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|