rna-XM_014656229.1

Transcript Overview
Namerna-XM_014656229.1
Unique Namerna-XM_014656229.1_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length1221
Productuncharacterized LOC106770417
References
External references for this mRNA
DatabaseAccession
GeneID106770417
GenbankXM_014656229.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr08chromosomechr08:25747788..25749008 -Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ccvrvL0256Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL0700Cajanus cajan Asha genome v1.0Cajanus cajan
vrvvrvL142Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvssR754Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR772Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR811Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvzwsR625Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvzwsR654Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR544Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR675Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR575Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuaR600Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvumR620Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR638Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR680Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvvaR742Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR792Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvstR654Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR673Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR689Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvunR546Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR584Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106770417gene-LOC106770417_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014656229.1-1exon-XM_014656229.1-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014511715.1cds-XP_014511715.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014656229.1_VrVC1973A-SNU_v1rna-XM_014656229.1_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014656229.1_VrVC1973A-SNU_v1rna-XM_014656229.1_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V081|A0A1S3V081_VIGRR (uncharacterized protein LOC106770417 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770417 PE=4 SV=1)

HSP 1 Score: 835.099 bits (2156), Expect = 0.000e+0
Identity = 406/406 (100.00%), Postives = 406/406 (100.00%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID
Sbjct:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T838|A0A1S3T838_VIGRR (uncharacterized protein LOC106752715 OS=Vigna radiata var. radiata OX=3916 GN=LOC106752715 PE=4 SV=1)

HSP 1 Score: 788.489 bits (2035), Expect = 0.000e+0
Identity = 379/406 (93.35%), Postives = 392/406 (96.55%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            MPENKVFPWVEKYGGA+DPVKHLRSFVDAMAVYSSD+LVWCRVFSLSLKDEALDWFHSLPPRSIDGF+TLRQLFSQQYASNRS+GLTYTALVRMKQGREESLKGFMER NRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQ DEGGSNVKIGRDRRGEKRSADGE RSG+KRG+E+QRAQQY HHTPLSAPRV VLEEALRANLLTVARSPTPRGADE+KHCRYHQNMGHSTEDC+AL+DKLESLVQAGHLREFVQR NP PREIPGR+GGR PAGQRV PAAERT+GGGSGERPLRGVINTISGGF GGGASSAARKRHLRNLHSVNKVGIA RTMPTI F DEDFHAPDPDQDDPMVIT IIARYSVGK+LID
Sbjct:    1 MPENKVFPWVEKYGGASDPVKHLRSFVDAMAVYSSDKLVWCRVFSLSLKDEALDWFHSLPPRSIDGFVTLRQLFSQQYASNRSRGLTYTALVRMKQGREESLKGFMERFNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQGDEGGSNVKIGRDRRGEKRSADGECRSGMKRGVEIQRAQQYVHHTPLSAPRVRVLEEALRANLLTVARSPTPRGADENKHCRYHQNMGHSTEDCIALKDKLESLVQAGHLREFVQRANPHPREIPGRYGGRPPAGQRVQPAAERTEGGGSGERPLRGVINTISGGFTGGGASSAARKRHLRNLHSVNKVGIAGRTMPTIAFSDEDFHAPDPDQDDPMVITTIIARYSVGKMLID 406          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VVB6|A0A1S3VVB6_VIGRR (uncharacterized protein LOC106778781 OS=Vigna radiata var. radiata OX=3916 GN=LOC106778781 PE=4 SV=1)

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 366/406 (90.15%), Postives = 378/406 (93.10%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            MPENKVFPWVEKYGG +DPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGF+TLRQLFSQQYASN S+GLTYTALV+MKQGREESLKGFMER NRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSM ELQHKLAGFIR+EEGR+YR DQ +EG +  K GRDRRGEKR   GE R  VKRG E+QRAQQYFHHTPLSAPRV VLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFV+R NP PRE PGRHGGRLP GQRV P AERT+GGGSGERPLRGVINTIS GFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITF DEDFHAP+PDQDDPMVIT IIARYSVG VLID
Sbjct:  178 MPENKVFPWVEKYGGTSDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFVTLRQLFSQQYASNCSRGLTYTALVKMKQGREESLKGFMERFNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMGELQHKLAGFIRIEEGRSYRSDQGEEGVTREKSGRDRRGEKRPVGGEHRMTVKRGAEIQRAQQYFHHTPLSAPRVRVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVRRENPNPRETPGRHGGRLPVGQRVQPTAERTEGGGSGERPLRGVINTISDGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFSDEDFHAPNPDQDDPMVITTIIARYSVGNVLID 583          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U4Q4|A0A1S3U4Q4_VIGRR (uncharacterized protein LOC106761915 OS=Vigna radiata var. radiata OX=3916 GN=LOC106761915 PE=4 SV=1)

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 348/407 (85.50%), Postives = 371/407 (91.15%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIG-RDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            MPENKVFPWVEKYGG +D VKHLRSFVDAMAVYSS+ELVWC  FSLSLKDEALDWFHSLPPRSIDGF+TLRQLFSQ YASNRS+GLTYTALVRMKQGREESLKGFMER NRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSM ELQ+KLAGFIR+EEGR+YR DQ +EGG+  + G R+RRGEKR   GE R  VKRG E+QRAQQYFHHTPLSAPRV VLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDC+ALRDKLESLVQAGHLREFV+R NP PR   GRH G+LP G+R  P  ERT+G G+G+RPL+GVINTISGGFAGGG SSAARKRHLR+L+SVNKVGI RRTMPTITF DEDFHAPDPDQDDPMVITAIIARYSVGKVL+D
Sbjct:  174 MPENKVFPWVEKYGGTSDLVKHLRSFVDAMAVYSSNELVWCXXFSLSLKDEALDWFHSLPPRSIDGFVTLRQLFSQXYASNRSRGLTYTALVRMKQGREESLKGFMERFNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMGELQNKLAGFIRIEEGRSYRSDQGEEGGTRERSGQRERRGEKRPVGGEHRVTVKRGAEIQRAQQYFHHTPLSAPRVRVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCMALRDKLESLVQAGHLREFVRRENPNPRGATGRHRGQLPVGERAQPTIERTEGEGNGDRPLKGVINTISGGFAGGGVSSAARKRHLRSLNSVNKVGIGRRTMPTITFSDEDFHAPDPDQDDPMVITAIIARYSVGKVLVD 580          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T9D3|A0A1S3T9D3_VIGRR (uncharacterized protein LOC106753098 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753098 PE=4 SV=1)

HSP 1 Score: 664.84 bits (1714), Expect = 0.000e+0
Identity = 349/406 (85.96%), Postives = 362/406 (89.16%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            M ENKVFPWVEKYGG +DPVKHLRSFVDAMAVYSS+E+VWCRVFSLSLKDEALDWFHSLPPRSIDGFITLR  FSQQYASNRS+GLTYTALVRMKQGREESLKGFMER NRTARQVRNVDQRLIVSALTTALRP PFVD LYEEEPQSM ELQ+KLAGFIR+EEGR+YR DQ +EGG   K GRDRRGEKR   GE RS VKRG E+QRAQ YFHHTPLSAPRV VLEEALRANLLTVARSPTP GADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFV+R NP PR    R  G LP GQR  PA ERT+G GSG  PLRGVINTISGGFAGGGASSAARKRHLR LHSVNKV + RRTMPTITF DEDFHAPDPD DDPMVITAIIARYSVGKVL+D
Sbjct:  177 MLENKVFPWVEKYGGTSDPVKHLRSFVDAMAVYSSNEMVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRXXFSQQYASNRSRGLTYTALVRMKQGREESLKGFMERFNRTARQVRNVDQRLIVSALTTALRPXPFVDXLYEEEPQSMAELQNKLAGFIRIEEGRSYRNDQGEEGGXREKPGRDRRGEKRPVGGEHRSTVKRGAEIQRAQXYFHHTPLSAPRVRVLEEALRANLLTVARSPTPXGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVRRENPNPRGAAERPRGHLPVGQRAQPAVERTEGEGSGXXPLRGVINTISGGFAGGGASSAARKRHLRXLHSVNKVAVGRRTMPTITFSDEDFHAPDPDXDDPMVITAIIARYSVGKVLVD 582          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3T9E6|A0A1S3T9E6_VIGRR (uncharacterized protein LOC106753108 OS=Vigna radiata var. radiata OX=3916 GN=LOC106753108 PE=4 SV=1)

HSP 1 Score: 660.603 bits (1703), Expect = 0.000e+0
Identity = 334/384 (86.98%), Postives = 350/384 (91.15%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPD 384
            MPENKVFPWVEKYGG +DPVKHLRSFVDAMAVYSS+ELVWCRVFSLSLKDEALDWFH LPPRSIDGF+TLRQLFSQQYASNRS+GLTYTALVRMKQGREESLKGFMER NRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSM ELQ+KL GFIR+EEGR+YR DQ +EG +  + GRDRRGEKR   GE R  VKRG EVQRAQ+YFHHTPLSAPRV VLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQ GHLREFV+R NP PR   GRH G+LP GQR  P AERT+G GSG+RPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGI RRTM +ITF DEDFHAPDPD
Sbjct:    1 MPENKVFPWVEKYGGTSDPVKHLRSFVDAMAVYSSNELVWCRVFSLSLKDEALDWFHLLPPRSIDGFVTLRQLFSQQYASNRSRGLTYTALVRMKQGREESLKGFMERFNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMGELQNKLVGFIRIEEGRSYRNDQGEEGMARERSGRDRRGEKRPVGGEHRMTVKRGAEVQRAQEYFHHTPLSAPRVRVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQVGHLREFVRRENPNPRGATGRHRGQLPVGQRAQPTAERTEGEGSGDRPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIGRRTMSSITFSDEDFHAPDPD 384          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TGI1|A0A1S3TGI1_VIGRR (uncharacterized protein LOC106755276 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755276 PE=4 SV=1)

HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 319/406 (78.57%), Postives = 343/406 (84.48%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            MPENKVFPWVEKYGG +D VKHLRSFVDAMAVYSSDELVWCRVF+LSLKDEALDWFHSLPP+SID FITLR LFSQQYASNRS+GLTYTALVR+K GREESLKGFMER NRTARQVRN DQRLIVSALTTALR GPFVDYLY EEP SMDE  HK AGF  +EEG AY  D  +EG   +K GRDRRGEKR ++GE R+ VKRG+E Q+ Q Y HHTPL+APRV VLEEALRANLL+VARSPTPRGA+ESKHCRYHQN GH TEDCV LRDK ESLVQ GHLRE VQR     R      G R P  +R PPA ER    G+GE PL GVINTISGGFAGGG SSAARKRHLRNLHSVN++G+ARRTMPTITF +EDFHAPDP+QDDPMVITAIIARYSVGKVL+D
Sbjct:  115 MPENKVFPWVEKYGGVSDSVKHLRSFVDAMAVYSSDELVWCRVFTLSLKDEALDWFHSLPPQSIDNFITLRHLFSQQYASNRSRGLTYTALVRLKLGREESLKGFMERFNRTARQVRNADQRLIVSALTTALRXGPFVDYLYXEEPXSMDEXXHKXAGFXXIEEGXAYXSDXGEEGVPVMKSGRDRRGEKRPSEGEHRTRVKRGVEXQKVQXYVHHTPLNAPRVRVLEEALRANLLSVARSPTPRGANESKHCRYHQNXGHXTEDCVTLRDKXESLVQXGHLREXVQRTGSHLRRSQVGQGRRQPVTRRDPPATERQGTNGNGEXPLXGVINTISGGFAGGGPSSAARKRHLRNLHSVNRIGLARRTMPTITFSNEDFHAPDPNQDDPMVITAIIARYSVGKVLVD 520          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3TTQ1|A0A1S3TTQ1_VIGRR (Ribonuclease H OS=Vigna radiata var. radiata OX=3916 GN=LOC106758713 PE=4 SV=1)

HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0
Identity = 326/406 (80.30%), Postives = 340/406 (83.74%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            M ENKVFPWVEKYGG +DPVKHLRSFVDAMAVYSS+EL                                  LFSQQYASNRS+GLTYTALVRMKQGREESLKGF ER NRTARQVRNVDQRLIVSALTTAL+PGPFVDYLYEEEPQSM ELQHKLAGFIR+EEGR+YR DQ +EG +  K GRDRRGEKR   GE R  VKRG E+Q+AQQYFHHT LSAPRV VLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFV+R NP PR+ PGRH GRLP GQR  P AERT+G GSGERPLRGVINTISG FAGGGASSAARKRHLRNLHSVNKVGI RRTMP+ITF DEDFHAPDPDQDDPMVITAIIARYSVGKVLID
Sbjct:    5 MLENKVFPWVEKYGGTSDPVKHLRSFVDAMAVYSSNEL----------------------------------LFSQQYASNRSRGLTYTALVRMKQGREESLKGFRERFNRTARQVRNVDQRLIVSALTTALKPGPFVDYLYEEEPQSMGELQHKLAGFIRIEEGRSYRSDQGEEGVTREKSGRDRRGEKRPVGGEHRMTVKRGTEIQKAQQYFHHTSLSAPRVRVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVRRENPNPRDTPGRHRGRLPVGQRAQPTAERTEGDGSGERPLRGVINTISGSFAGGGASSAARKRHLRNLHSVNKVGIGRRTMPSITFSDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 376          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3VAZ3|A0A1S3VAZ3_VIGRR (uncharacterized protein LOC106773338 OS=Vigna radiata var. radiata OX=3916 GN=LOC106773338 PE=4 SV=1)

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 318/409 (77.75%), Postives = 346/409 (84.60%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNV---KIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            MPENKVFPWVEK+GG +DPVKHLRS VDAMAVYSSDELVWCRVFSLSL+DEALDWFHSLPPRSIDGF+TLR LF+QQYASNRS+GLTYTALVRMKQ REESLK FMER NRTARQVRN DQRL+V  LTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRA+RG+Q +   S V   + G+DRRGEKR  +GE R  V+R  E +  QQY HHTPL+APRV V+EEALRA+LL+V RSPTPRGADESKHCRYHQN GHSTEDCV L+DKLESLVQAGHLREFVQR NP         G   P  +R PP  ER +  G  ERPLRG+INTISGGFAGGG SSAARKRHLR+L +VN + +ARRTMP ITF DEDFHAPDP QDDPMVITAIIARYSVGKVL+D
Sbjct:    1 MPENKVFPWVEKFGGTSDPVKHLRSSVDAMAVYSSDELVWCRVFSLSLRDEALDWFHSLPPRSIDGFVTLRHLFTQQYASNRSRGLTYTALVRMKQRREESLKEFMERFNRTARQVRNADQRLVVGTLTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAHRGEQWEGEASGVPGGRTGQDRRGEKRQNEGEFRRVVRREPETRGIQQYVHHTPLNAPRVRVMEEALRAHLLSVVRSPTPRGADESKHCRYHQNRGHSTEDCVTLKDKLESLVQAGHLREFVQRVNPRVGRSRAGQGELQPVVRRDPPGNERPETNGGNERPLRGIINTISGGFAGGGPSSAARKRHLRSLLNVNGIRMARRTMPIITFSDEDFHAPDPYQDDPMVITAIIARYSVGKVLVD 409          
BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3U6H1|A0A1S3U6H1_VIGRR (uncharacterized protein LOC106762304 OS=Vigna radiata var. radiata OX=3916 GN=LOC106762304 PE=4 SV=1)

HSP 1 Score: 634.795 bits (1636), Expect = 0.000e+0
Identity = 317/406 (78.08%), Postives = 339/406 (83.50%), Query Frame = 0
Query:    1 MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDEALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREESLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMDELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSGVKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADESKHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRHGGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKRHLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSVGKVLID 406
            MPENKVFPWVEKYGGA+D VKHLRSFVDAMAVYSSDELVWCRVFSLSLKD A  WFHSLPPRSIDGF+TLR  FSQQYASNRS+GLTYT LVRMKQGR+ESLKGFMER N+TARQVRNVDQRLIV+ALT ALRPGPFVDYLYEEE QSM EL+                GDQ +EG    K+GRDRRGEK+  +G+ R+ VKRG ++QRAQQY HHTPLSAPRV VLEEALR NLL+VARSPTPRGADESK CRYHQNMGHSTEDCV L+DKLESL+QAGHLREFVQR N  PR   G  G R  A +R    AER KG  SGERPLR VINTISGGFAGGG SSAARKRHLRNLH+VN V +ARRTMPTI F DEDFHAPDP+QDDPMVITAIIARYSVGKVLID
Sbjct:  146 MPENKVFPWVEKYGGASDLVKHLRSFVDAMAVYSSDELVWCRVFSLSLKDVAFYWFHSLPPRSIDGFVTLRHFFSQQYASNRSRGLTYTTLVRMKQGRDESLKGFMERFNQTARQVRNVDQRLIVTALTNALRPGPFVDYLYEEESQSMGELKS---------------GDQGEEGALREKLGRDRRGEKQPGEGDHRAVVKRGAKMQRAQQYVHHTPLSAPRVRVLEEALRTNLLSVARSPTPRGADESKLCRYHQNMGHSTEDCVTLKDKLESLMQAGHLREFVQRVNSRPRRGQGGQGSRQSAVRRELLTAERPKGERSGERPLREVINTISGGFAGGGPSSAARKRHLRNLHNVNGVRVARRTMPTIMFSDEDFHAPDPNQDDPMVITAIIARYSVGKVLID 536          
The following BLAST results are available for this feature:
BLAST of rna-XM_014656229.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_014656229.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of rna-XM_014656229.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3V081|A0A1S3V081_VIGRR0.000e+0100.00uncharacterized protein LOC106770417 OS=Vigna radi... [more]
tr|A0A1S3T838|A0A1S3T838_VIGRR0.000e+093.35uncharacterized protein LOC106752715 OS=Vigna radi... [more]
tr|A0A1S3VVB6|A0A1S3VVB6_VIGRR0.000e+090.15uncharacterized protein LOC106778781 OS=Vigna radi... [more]
tr|A0A1S3U4Q4|A0A1S3U4Q4_VIGRR0.000e+085.50uncharacterized protein LOC106761915 OS=Vigna radi... [more]
tr|A0A1S3T9D3|A0A1S3T9D3_VIGRR0.000e+085.96uncharacterized protein LOC106753098 OS=Vigna radi... [more]
tr|A0A1S3T9E6|A0A1S3T9E6_VIGRR0.000e+086.98uncharacterized protein LOC106753108 OS=Vigna radi... [more]
tr|A0A1S3TGI1|A0A1S3TGI1_VIGRR0.000e+078.57uncharacterized protein LOC106755276 OS=Vigna radi... [more]
tr|A0A1S3TTQ1|A0A1S3TTQ1_VIGRR0.000e+080.30Ribonuclease H OS=Vigna radiata var. radiata OX=39... [more]
tr|A0A1S3VAZ3|A0A1S3VAZ3_VIGRR0.000e+077.75uncharacterized protein LOC106773338 OS=Vigna radi... [more]
tr|A0A1S3U6H1|A0A1S3U6H1_VIGRR0.000e+078.08uncharacterized protein LOC106762304 OS=Vigna radi... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 43..131
e-value: 5.9E-11
score: 42.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 291..323
NoneNo IPR availablePANTHERPTHR33223CCHC-TYPE DOMAIN-CONTAINING PROTEINcoord: 14..286

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014656229.1_VrVC1973A-SNU_v1 ID=rna-XM_014656229.1_VrVC1973A-SNU_v1; Name=rna-XM_014656229.1; organism=Vigna radiata; type=mRNA; length=1221bp
ATGCCGGAGAATAAGGTTTTCCCATGGGTTGAGAAGTATGGAGGTGCAAC
GGATCCGGTGAAACACCTACGGTCGTTCGTGGATGCTATGGCGGTGTATT
CTTCTGACGAGCTGGTCTGGTGCAGGGTGTTTTCTTTATCCTTAAAGGAT
GAAGCTCTGGATTGGTTTCATTCACTGCCGCCGCGAAGCATTGATGGATT
CATTACTTTGAGACAGTTGTTTAGCCAACAGTATGCATCAAACCGGTCGC
AGGGTTTGACTTATACGGCCCTTGTCAGGATGAAGCAAGGACGAGAGGAG
TCATTGAAGGGGTTCATGGAGCGCTTGAACCGAACCGCTCGACAGGTGAG
GAACGTCGATCAACGGCTGATAGTCAGCGCCCTCACTACGGCGTTGAGGC
CGGGACCTTTTGTGGATTATTTGTACGAGGAAGAGCCTCAGTCAATGGAT
GAGCTGCAGCATAAACTGGCCGGGTTTATTCGGGTAGAAGAGGGAAGGGC
GTATCGAGGCGATCAGGCTGATGAAGGGGGGTCTAATGTGAAGATAGGAC
GAGACCGAAGAGGAGAGAAGCGGTCGGCTGACGGAGAGCGCCGATCGGGT
GTGAAGCGAGGGATAGAGGTTCAGAGAGCGCAACAATACTTCCATCACAC
TCCATTGAGTGCCCCGAGGGTGACAGTCCTGGAAGAGGCCTTAAGGGCTA
ATCTGCTGACGGTAGCACGGTCCCCGACCCCACGGGGAGCGGATGAAAGT
AAACATTGCCGGTATCATCAGAATATGGGGCATTCTACTGAGGATTGTGT
CGCGTTGAGAGATAAGTTGGAGAGCCTGGTGCAGGCGGGGCACCTGAGGG
AATTTGTTCAAAGGGGGAATCCTGGCCCGAGGGAGATCCCGGGAAGACAC
GGGGGTCGATTGCCGGCCGGGCAGAGGGTTCCGCCGGCTGCTGAACGGAC
AAAGGGCGGCGGAAGTGGAGAAAGGCCTCTGAGAGGGGTGATAAATACCA
TATCGGGCGGTTTTGCTGGAGGAGGGGCGTCCTCAGCCGCCCGAAAGCGG
CATTTGAGAAATTTGCATAGTGTGAATAAGGTGGGGATTGCTAGAAGAAC
CATGCCTACCATAACGTTTTTAGACGAGGATTTCCATGCACCGGATCCGG
ACCAAGACGACCCTATGGTCATAACGGCTATCATCGCTCGGTACAGCGTG
GGAAAGGTGTTGATTGACTAG
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protein sequence of rna-XM_014656229.1_VrVC1973A-SNU_v1

>rna-XM_014656229.1_VrVC1973A-SNU_v1 ID=rna-XM_014656229.1_VrVC1973A-SNU_v1; Name=rna-XM_014656229.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=406bp
MPENKVFPWVEKYGGATDPVKHLRSFVDAMAVYSSDELVWCRVFSLSLKD
EALDWFHSLPPRSIDGFITLRQLFSQQYASNRSQGLTYTALVRMKQGREE
SLKGFMERLNRTARQVRNVDQRLIVSALTTALRPGPFVDYLYEEEPQSMD
ELQHKLAGFIRVEEGRAYRGDQADEGGSNVKIGRDRRGEKRSADGERRSG
VKRGIEVQRAQQYFHHTPLSAPRVTVLEEALRANLLTVARSPTPRGADES
KHCRYHQNMGHSTEDCVALRDKLESLVQAGHLREFVQRGNPGPREIPGRH
GGRLPAGQRVPPAAERTKGGGSGERPLRGVINTISGGFAGGGASSAARKR
HLRNLHSVNKVGIARRTMPTITFLDEDFHAPDPDQDDPMVITAIIARYSV
GKVLID
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mRNA from alignment at chr08:25747788..25749008-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014656229.1_VrVC1973A-SNU_v1 ID=rna-XM_014656229.1_VrVC1973A-SNU_v1; Name=rna-XM_014656229.1; organism=Vigna radiata; type=mRNA; length=1221bp; location=Sequence derived from: chr08:25747788..25749008- (Vigna radiata
ATGCCGGAGAATAAGGTTTTCCCATGGGTTGAGAAGTATGGAGGTGCAAC GGATCCGGTGAAACACCTACGGTCGTTCGTGGATGCTATGGCGGTGTATT CTTCTGACGAGCTGGTCTGGTGCAGGGTGTTTTCTTTATCCTTAAAGGAT GAAGCTCTGGATTGGTTTCATTCACTGCCGCCGCGAAGCATTGATGGATT CATTACTTTGAGACAGTTGTTTAGCCAACAGTATGCATCAAACCGGTCGC AGGGTTTGACTTATACGGCCCTTGTCAGGATGAAGCAAGGACGAGAGGAG TCATTGAAGGGGTTCATGGAGCGCTTGAACCGAACCGCTCGACAGGTGAG GAACGTCGATCAACGGCTGATAGTCAGCGCCCTCACTACGGCGTTGAGGC CGGGACCTTTTGTGGATTATTTGTACGAGGAAGAGCCTCAGTCAATGGAT GAGCTGCAGCATAAACTGGCCGGGTTTATTCGGGTAGAAGAGGGAAGGGC GTATCGAGGCGATCAGGCTGATGAAGGGGGGTCTAATGTGAAGATAGGAC GAGACCGAAGAGGAGAGAAGCGGTCGGCTGACGGAGAGCGCCGATCGGGT GTGAAGCGAGGGATAGAGGTTCAGAGAGCGCAACAATACTTCCATCACAC TCCATTGAGTGCCCCGAGGGTGACAGTCCTGGAAGAGGCCTTAAGGGCTA ATCTGCTGACGGTAGCACGGTCCCCGACCCCACGGGGAGCGGATGAAAGT AAACATTGCCGGTATCATCAGAATATGGGGCATTCTACTGAGGATTGTGT CGCGTTGAGAGATAAGTTGGAGAGCCTGGTGCAGGCGGGGCACCTGAGGG AATTTGTTCAAAGGGGGAATCCTGGCCCGAGGGAGATCCCGGGAAGACAC GGGGGTCGATTGCCGGCCGGGCAGAGGGTTCCGCCGGCTGCTGAACGGAC AAAGGGCGGCGGAAGTGGAGAAAGGCCTCTGAGAGGGGTGATAAATACCA TATCGGGCGGTTTTGCTGGAGGAGGGGCGTCCTCAGCCGCCCGAAAGCGG CATTTGAGAAATTTGCATAGTGTGAATAAGGTGGGGATTGCTAGAAGAAC CATGCCTACCATAACGTTTTTAGACGAGGATTTCCATGCACCGGATCCGG ACCAAGACGACCCTATGGTCATAACGGCTATCATCGCTCGGTACAGCGTG GGAAAGGTGTTGATTGACTAG
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Coding sequence (CDS) from alignment at chr08:25747788..25749008-

>rna-XM_014656229.1_VrVC1973A-SNU_v1 ID=rna-XM_014656229.1_VrVC1973A-SNU_v1; Name=rna-XM_014656229.1; organism=Vigna radiata; type=CDS; length=1221bp; location=Sequence derived from: chr08:25747788..25749008- (Vigna radiata
ATGCCGGAGAATAAGGTTTTCCCATGGGTTGAGAAGTATGGAGGTGCAAC
GGATCCGGTGAAACACCTACGGTCGTTCGTGGATGCTATGGCGGTGTATT
CTTCTGACGAGCTGGTCTGGTGCAGGGTGTTTTCTTTATCCTTAAAGGAT
GAAGCTCTGGATTGGTTTCATTCACTGCCGCCGCGAAGCATTGATGGATT
CATTACTTTGAGACAGTTGTTTAGCCAACAGTATGCATCAAACCGGTCGC
AGGGTTTGACTTATACGGCCCTTGTCAGGATGAAGCAAGGACGAGAGGAG
TCATTGAAGGGGTTCATGGAGCGCTTGAACCGAACCGCTCGACAGGTGAG
GAACGTCGATCAACGGCTGATAGTCAGCGCCCTCACTACGGCGTTGAGGC
CGGGACCTTTTGTGGATTATTTGTACGAGGAAGAGCCTCAGTCAATGGAT
GAGCTGCAGCATAAACTGGCCGGGTTTATTCGGGTAGAAGAGGGAAGGGC
GTATCGAGGCGATCAGGCTGATGAAGGGGGGTCTAATGTGAAGATAGGAC
GAGACCGAAGAGGAGAGAAGCGGTCGGCTGACGGAGAGCGCCGATCGGGT
GTGAAGCGAGGGATAGAGGTTCAGAGAGCGCAACAATACTTCCATCACAC
TCCATTGAGTGCCCCGAGGGTGACAGTCCTGGAAGAGGCCTTAAGGGCTA
ATCTGCTGACGGTAGCACGGTCCCCGACCCCACGGGGAGCGGATGAAAGT
AAACATTGCCGGTATCATCAGAATATGGGGCATTCTACTGAGGATTGTGT
CGCGTTGAGAGATAAGTTGGAGAGCCTGGTGCAGGCGGGGCACCTGAGGG
AATTTGTTCAAAGGGGGAATCCTGGCCCGAGGGAGATCCCGGGAAGACAC
GGGGGTCGATTGCCGGCCGGGCAGAGGGTTCCGCCGGCTGCTGAACGGAC
AAAGGGCGGCGGAAGTGGAGAAAGGCCTCTGAGAGGGGTGATAAATACCA
TATCGGGCGGTTTTGCTGGAGGAGGGGCGTCCTCAGCCGCCCGAAAGCGG
CATTTGAGAAATTTGCATAGTGTGAATAAGGTGGGGATTGCTAGAAGAAC
CATGCCTACCATAACGTTTTTAGACGAGGATTTCCATGCACCGGATCCGG
ACCAAGACGACCCTATGGTCATAACGGCTATCATCGCTCGGTACAGCGTG
GGAAAGGTGTTGATTGACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom