rna-XM_014656338.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V0Z7|A0A1S3V0Z7_VIGRR (uncharacterized protein LOC106770535 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770535 PE=4 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 3.609e-111 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 Query: 1 MPSLYVHGPNHNGWFSLEQMLDGEGSRRSELEALKIKMACLASSTFTLPFCASSLNKGVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 MPSLYVHGPNHNGWFSLEQMLDGEGSRRSELEALKIKMACLASSTFTLPFCASSLNKGVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN Sbjct: 1 MPSLYVHGPNHNGWFSLEQMLDGEGSRRSELEALKIKMACLASSTFTLPFCASSLNKGVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SQB6|A0A0S3SQB6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G172000 PE=4 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 1.036e-60 Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0 Query: 57 KGVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 +GVHQHQLNFALDR+LSK IRTAQKIV SSSSNKLTLSLKGSCLRCLMS TRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN Sbjct: 10 QGVHQHQLNFALDRLLSKVTIRTAQKIVGSSSSNKLTLSLKGSCLRCLMSWTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 106
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0EQ23|A0A0R0EQ23_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G234700 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.105e-56 Identity = 95/126 (75.40%), Postives = 99/126 (78.57%), Query Frame = 0 Query: 32 EALKIKMACLASSTFTLPFC--ASSLNK--GVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 E KMA L SSTFTLP AS LNK GVHQHQL + LDR LSKA I AQKI+ + SSNK LS+KGSC RCLMSCT FLHETYSYNL V YCTEIVISGYWVGPDADDGWGFVEAVINQMN Sbjct: 42 EVEVFKMAFLVSSTFTLPLRVRASPLNKNKGVHQHQLYYPLDRFLSKATIPAAQKILGTCSSNKRILSMKGSCHRCLMSCTIFLHETYSYNLDVDYCTEIVISGYWVGPDADDGWGFVEAVINQMN 167
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445F9G4|A0A445F9G4_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_054984 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.499e-56 Identity = 95/127 (74.80%), Postives = 99/127 (77.95%), Query Frame = 0 Query: 32 EALKIKMACLASSTFTLPFC--ASSLNK---GVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 E KMA L SSTFTLP AS LNK GVHQHQL + LDR LSKA I AQKI+ + SSNK LS+KGSC RCLMSCT FLHETYSYNL V YCTEIVISGYWVGPDADDGWGFVEAVINQMN Sbjct: 42 EVEVFKMAFLVSSTFTLPLRVRASPLNKNKQGVHQHQLYYPLDRFLSKATIPAAQKILGTCSSNKRILSMKGSCHRCLMSCTIFLHETYSYNLDVDYCTEIVISGYWVGPDADDGWGFVEAVINQMN 168
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0R0ERG3|A0A0R0ERG3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G234700 PE=4 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.499e-56 Identity = 95/127 (74.80%), Postives = 99/127 (77.95%), Query Frame = 0 Query: 32 EALKIKMACLASSTFTLPFC--ASSLNK---GVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 E KMA L SSTFTLP AS LNK GVHQHQL + LDR LSKA I AQKI+ + SSNK LS+KGSC RCLMSCT FLHETYSYNL V YCTEIVISGYWVGPDADDGWGFVEAVINQMN Sbjct: 42 EVEVFKMAFLVSSTFTLPLRVRASPLNKNKQGVHQHQLYYPLDRFLSKATIPAAQKILGTCSSNKRILSMKGSCHRCLMSCTIFLHETYSYNLDVDYCTEIVISGYWVGPDADDGWGFVEAVINQMN 168
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3E3G1|A0A1S3E3G1_CICAR (uncharacterized protein LOC105851871 OS=Cicer arietinum OX=3827 GN=LOC105851871 PE=4 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 6.341e-38 Identity = 72/131 (54.96%), Postives = 92/131 (70.23%), Query Frame = 0 Query: 25 GSRRSELEALKIKMACLASSTFTLPFCASSLNKGVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGS--CLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 GSR + KMA L S++FT+P C +NKGVH+ L+ A+ ++ KA I TAQ I+ S SSNK TL ++GS C RCL+S RFLH++YS V YC +IVISGYWVGPDADDGWGFVEA+I+Q+ Sbjct: 27 GSRIVQSVVEVSKMAWLISTSFTVPLC---VNKGVHE--LDSAMTKLSKKATITTAQNIIGSCSSNKHTLFVEGSGSCQRCLISLARFLHDSYSSKEDVNYCAKIVISGYWVGPDADDGWGFVEAIIDQIT 152
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A396JVF6|A0A396JVF6_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0191971 PE=4 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.175e-30 Identity = 62/120 (51.67%), Postives = 80/120 (66.67%), Query Frame = 0 Query: 36 IKMA-CLASSTFTLPFCASSLNKGVHQHQLNFALDRILSKAAIRTAQKIVRSSSSNKLTL--SLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQM 152 +KM CL S++FT+P +NKG++ L++AL + K I TAQ I+ S SN+ L +GSC C MS R LH++YSY V Y T+IVISGYWVGPD DDGWGFVEAVI+Q+ Sbjct: 3 LKMVLCLLSTSFTVPL---PVNKGLNN--LDYALTKFTRKPTITTAQNIIGSCISNRHILFSEGRGSCHHCFMSLARLLHDSYSYKGNVNYYTKIVISGYWVGPDVDDGWGFVEAVIDQI 117
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A6A4N5Z7|A0A6A4N5Z7_LUPAL (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00000213 PE=4 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.870e-27 Identity = 57/92 (61.96%), Postives = 66/92 (71.74%), Query Frame = 0 Query: 62 HQLNFALDRILSKAAIRTAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 H L+FAL + + AQK++ S SSNK LS+K C MS TRFL E++SYNL V Y TEIVISGYWVGPDADDGWGFV+AVINQM Sbjct: 37 HDLHFALPTL----PLTKAQKVLGSCSSNKQILSVKRICQH--MSGTRFLGESFSYNLNVDYYTEIVISGYWVGPDADDGWGFVQAVINQMT 122
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A6P4BC16|A0A6P4BC16_ARADU (uncharacterized protein LOC107465341 OS=Arachis duranensis OX=130453 GN=LOC107465341 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.233e-26 Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 0 Query: 38 MACLASSTFTLPFCASSLNKGV---HQHQLNFALDRILSKAAIR------TAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 M CL S++F P S +L +L R S + +AQK + + SSN+ LS+KG CLMSCTRF++E++SYN+ +C EI + GYWVGPD DDGWGFVEAVINQ+ Sbjct: 1 MTCLVSTSFAFPVRISLPRPPPSIKEVQRLESSLVRFSSSETVTAGYILFSAQKTLVACSSNRHILSVKGRFQHCLMSCTRFIYESFSYNMNNVHCMEIFLCGYWVGPDDDDGWGFVEAVINQIT 125
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445BKJ1|A0A445BKJ1_ARAHY (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A09g044663 PE=4 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.233e-26 Identity = 56/125 (44.80%), Postives = 74/125 (59.20%), Query Frame = 0 Query: 38 MACLASSTFTLPFCASSLNKGV---HQHQLNFALDRILSKAAIR------TAQKIVRSSSSNKLTLSLKGSCLRCLMSCTRFLHETYSYNLGVGYCTEIVISGYWVGPDADDGWGFVEAVINQMN 153 M CL S++F P S +L +L R S + +AQK + + SSN+ LS+KG CLMSCTRF++E++SYN+ +C EI + GYWVGPD DDGWGFVEAVINQ+ Sbjct: 1 MTCLVSTSFAFPVRISLPRPPPSIKEVQRLESSLVRFSSSETVTAGYILFSAQKTLVACSSNRHILSVKGRFQHCLMSCTRFIYESFSYNMNNVHCMEIFLCGYWVGPDDDDGWGFVEAVINQIT 125 The following BLAST results are available for this feature:
BLAST of rna-XM_014656338.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_014656338.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 0
BLAST of rna-XM_014656338.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014656338.2_VrVC1973A-SNU_v1 ID=rna-XM_014656338.2_VrVC1973A-SNU_v1; Name=rna-XM_014656338.2; organism=Vigna radiata; type=mRNA; length=462bpback to top protein sequence of rna-XM_014656338.2_VrVC1973A-SNU_v1 >rna-XM_014656338.2_VrVC1973A-SNU_v1 ID=rna-XM_014656338.2_VrVC1973A-SNU_v1; Name=rna-XM_014656338.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=153bpback to top mRNA from alignment at chr08:32004963..32007263- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014656338.2_VrVC1973A-SNU_v1 ID=rna-XM_014656338.2_VrVC1973A-SNU_v1; Name=rna-XM_014656338.2; organism=Vigna radiata; type=mRNA; length=2301bp; location=Sequence derived from: chr08:32004963..32007263- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr08:32004963..32007263- >rna-XM_014656338.2_VrVC1973A-SNU_v1 ID=rna-XM_014656338.2_VrVC1973A-SNU_v1; Name=rna-XM_014656338.2; organism=Vigna radiata; type=CDS; length=462bp; location=Sequence derived from: chr08:32004963..32007263- (Vigna radiataback to top |