rna-XM_014656796.2

Transcript Overview
Namerna-XM_014656796.2
Unique Namerna-XM_014656796.2_VrVC1973A-SNU_v1
TypemRNA
OrganismVigna radiata (Mung bean, green gram)
Sequence length546
Productmethyl-CpG-binding domain-containing protein 4, transcript variant X1
References
External references for this mRNA
DatabaseAccession
GeneID106770942
GenbankXM_014656796.2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr08chromosomechr08:26864738..26866699 -Vigna radiata cv. VC1973A genome v6.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
anvrvL0657Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL0806Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvrvL1114Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
caivrvL301Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivrvL306Cicer arietinum ICC 4958 genome v2Cicer arietinum
caivrvL430Cicer arietinum ICC 4958 genome v2Cicer arietinum
cavrvL240Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavrvL363Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvrvL0812Cajanus cajan Asha genome v1.0Cajanus cajan
ccvrvL0814Cajanus cajan Asha genome v1.0Cajanus cajan
crvrvL282Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvrvL407Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
psvrvL091Pisum sativum Cameor genome v1aPisum sativum
psvrvL225Pisum sativum Cameor genome v1aPisum sativum
pvvrvL067Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
psvrvL562Pisum sativum Cameor genome v1aPisum sativum
pvvrvL591Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
tifvrvL102Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvrvL418Vicia faba cv. Tiffany genome v1.0Vicia faba
tifvrvL608Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvrvL142Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vfhvrvL108Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvrvL435Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvrvL615Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvssR758Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR777Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvssR836Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvzwsR620Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvzwsR629Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR544Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvzwsR683Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuaR572Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuR587Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuaR575Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vrvvuR620Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vrvvuR624Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
canvrvL222Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvrvL337Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvrvL316Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvrvL398Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvrvL226Cicer arietinum
carvrvL334Cicer arietinum
ccavrvL238Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavrvL374Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vrvvumR620Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvumR680Vigna umbellata FF25 genome v1.0Vigna umbellata
vrvvvaR720Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR778Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvvaR796Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vrvvstR625Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR654Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vrvvstR683Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvrvL409Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvrvL583Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvrvL062Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvrvL551Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vrvvunR546Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR580Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vrvvunR584Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Ca_09939.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun07g114000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun07g114000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va02G041170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.3g084880.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat6g169800.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_03636.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Phvul.007G168400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_08314Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.3g105280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Psat06G0459300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058914242.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cr_08283.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vum_08G01858.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg2570.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_010795Cajanus cajan Asha genome v1.0Cajanus cajan
evm.model.Chr07.2689Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.08G240200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-TanjilR_11488Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004496007.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
PvulFLAVERTChr07.1096Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.08G162300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC106770942gene-LOC106770942_VrVC1973A-SNU_v1Vigna radiatagene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_014656796.2-2exon-XM_014656796.2-2_VrVC1973A-SNU_v1Vigna radiataexon
exon-XM_014656796.2-1exon-XM_014656796.2-1_VrVC1973A-SNU_v1Vigna radiataexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_014512282.1cds-XP_014512282.1_VrVC1973A-SNU_v1_2Vigna radiataCDS
cds-XP_014512282.1cds-XP_014512282.1_VrVC1973A-SNU_v1Vigna radiataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_014656796.2_VrVC1973A-SNU_v1rna-XM_014656796.2_VrVC1973A-SNU_v1Vigna radiatapolypeptide
rna-XM_014656796.2_VrVC1973A-SNU_v1rna-XM_014656796.2_VrVC1973A-SNU_v1-proteinVigna radiatapolypeptide


Homology
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9LYB9|MBD4_ARATH (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 6.246e-70
Identity = 97/159 (61.01%), Postives = 124/159 (77.99%), Query Frame = 0 
Query:    4 MKGSQEISKTPSSSKRTLSSQGS-VDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIP 161
            MK  +EI K      +   + G  +D YAAQC NC KWRVID+QEE+E++RSK  E+PF C +K   SC+EPADI+YDS+RTWVIDKP LPKTP+GF+RSLVLRKDYSK+D YY TP+GKKLR+RNEI AF++ NPEF+   + DF+F+ PK+M+DT+P
Sbjct:    1 MKEEEEIGKPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q5XEN5|MBD1_ARATH (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.416e-62
Identity = 78/136 (57.35%), Postives = 112/136 (82.35%), Query Frame = 0 
Query:   26 SVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIP 161
            S+D++A QC+ C+KWR IDTQ+E+E++RS+  E+PF C  K   SC++  D+ YDS+RTWVIDKP LP+TP+GF+RSL+LRKDYSK+DAYY+TP+GKKL++RNEI AF+  N ++K   + DF+F+ PK+M++T+P
Sbjct:   51 SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLGDFNFTVPKVMEETVP 186
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q8LA53|MBD2_ARATH (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.046e-34
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0 
Query:   26 SVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSR----KANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSK--LDAYYVTPSGKKLRTRNEIGAFLKDNPEF--KGVSVTDFDFSSPKIMQD 158
            S+  +  QC +C KWR++ + +++EE+R +  E PF C      K + SCD PADI  D TR W IDKPN+ + P G++R L +R +      D YYV PSGKKLR+  E+  +L DN E+  +GV ++ F F  PK +QD
Sbjct:   55 SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD 195
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q4PSK1|MBD3_ARATH (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MBD3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.371e-28
Identity = 54/131 (41.22%), Postives = 84/131 (64.12%), Query Frame = 0 
Query:   27 VDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPAD--IEYDS-TRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYY--VTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSS 152
            +D YAAQC  CLK R I++QE++EE+RSK  E+ F C R     C+EP D  + +DS T  W  D+ ++PKTPQG +R LV+R +  K+D YY  + P  K+ ++  E+  F++D  EFK +++ +  F++
Sbjct:    9 IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMTLEEVSFAA 134
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9FZP6|MBD12_ARATH (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.663e-21
Identity = 51/156 (32.69%), Postives = 86/156 (55.13%), Query Frame = 0 
Query:   32 AQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKA----NCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKL-DAYYVTPSGKKLRTRNEIGAFLKDNPEF--KGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGD 180
             QC +C KWR+I + + +  ++    + PFVC   +    N SC+ P D    +  TW    P++P  P G+ RS+ +R + +K  D YY  PSG++LR+  E+ +FL ++PE+  +GV+ + F F  PK + D     V++R    K+ K +K +
Sbjct:    2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW----PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNRSQFSFQIPKPLDD---NYVKKRTRPVKRRKSSKDN 148
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT3G63030.1 (| methyl-CPG-binding domain 4 | Chr3:23295394-23296425 FORWARD LENGTH=186 | 201606)

HSP 1 Score: 213.001 bits (541), Expect = 6.390e-71
Identity = 97/159 (61.01%), Postives = 124/159 (77.99%), Query Frame = 0 
Query:    4 MKGSQEISKTPSSSKRTLSSQGS-VDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIP 161
            MK  +EI K      +   + G  +D YAAQC NC KWRVID+QEE+E++RSK  E+PF C +K   SC+EPADI+YDS+RTWVIDKP LPKTP+GF+RSLVLRKDYSK+D YY TP+GKKLR+RNEI AF++ NPEF+   + DF+F+ PK+M+DT+P
Sbjct:    1 MKEEEEIGKPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT4G22745.1 (| methyl-CPG-binding domain 1 | Chr4:11947421-11948514 REVERSE LENGTH=204 | 201606)

HSP 1 Score: 193.741 bits (491), Expect = 5.541e-63
Identity = 78/136 (57.35%), Postives = 112/136 (82.35%), Query Frame = 0 
Query:   26 SVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIP 161
            S+D++A QC+ C+KWR IDTQ+E+E++RS+  E+PF C  K   SC++  D+ YDS+RTWVIDKP LP+TP+GF+RSL+LRKDYSK+DAYY+TP+GKKL++RNEI AF+  N ++K   + DF+F+ PK+M++T+P
Sbjct:   51 SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLGDFNFTVPKVMEETVP 186
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT5G35330.4 (| methyl-CPG-binding domain protein 02 | Chr5:13523725-13525270 REVERSE LENGTH=272 | 201606)

HSP 1 Score: 124.79 bits (312), Expect = 3.116e-35
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0 
Query:   26 SVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSR----KANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSK--LDAYYVTPSGKKLRTRNEIGAFLKDNPEF--KGVSVTDFDFSSPKIMQD 158
            S+  +  QC +C KWR++ + +++EE+R +  E PF C      K + SCD PADI  D TR W IDKPN+ + P G++R L +R +      D YYV PSGKKLR+  E+  +L DN E+  +GV ++ F F  PK +QD
Sbjct:   55 SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD 195
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT5G35330.3 (| methyl-CPG-binding domain protein 02 | Chr5:13523725-13525270 REVERSE LENGTH=272 | 201606)

HSP 1 Score: 124.79 bits (312), Expect = 3.116e-35
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0 
Query:   26 SVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSR----KANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSK--LDAYYVTPSGKKLRTRNEIGAFLKDNPEF--KGVSVTDFDFSSPKIMQD 158
            S+  +  QC +C KWR++ + +++EE+R +  E PF C      K + SCD PADI  D TR W IDKPN+ + P G++R L +R +      D YYV PSGKKLR+  E+  +L DN E+  +GV ++ F F  PK +QD
Sbjct:   55 SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD 195
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT5G35330.2 (| methyl-CPG-binding domain protein 02 | Chr5:13523725-13525270 REVERSE LENGTH=272 | 201606)

HSP 1 Score: 124.79 bits (312), Expect = 3.116e-35
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0 
Query:   26 SVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSR----KANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSK--LDAYYVTPSGKKLRTRNEIGAFLKDNPEF--KGVSVTDFDFSSPKIMQD 158
            S+  +  QC +C KWR++ + +++EE+R +  E PF C      K + SCD PADI  D TR W IDKPN+ + P G++R L +R +      D YYV PSGKKLR+  E+  +L DN E+  +GV ++ F F  PK +QD
Sbjct:   55 SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD 195
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT5G35330.1 (| methyl-CPG-binding domain protein 02 | Chr5:13523725-13525270 REVERSE LENGTH=272 | 201606)

HSP 1 Score: 124.79 bits (312), Expect = 3.116e-35
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 0 
Query:   26 SVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSR----KANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSK--LDAYYVTPSGKKLRTRNEIGAFLKDNPEF--KGVSVTDFDFSSPKIMQD 158
            S+  +  QC +C KWR++ + +++EE+R +  E PF C      K + SCD PADI  D TR W IDKPN+ + P G++R L +R +      D YYV PSGKKLR+  E+  +L DN E+  +GV ++ F F  PK +QD
Sbjct:   55 SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQD 195
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT4G00416.1 (| methyl-CPG-binding domain 3 | Chr4:179022-179513 FORWARD LENGTH=163 | 201606)

HSP 1 Score: 105.916 bits (263), Expect = 4.472e-29
Identity = 54/131 (41.22%), Postives = 84/131 (64.12%), Query Frame = 0 
Query:   27 VDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPAD--IEYDS-TRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYY--VTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSS 152
            +D YAAQC  CLK R I++QE++EE+RSK  E+ F C R     C+EP D  + +DS T  W  D+ ++PKTPQG +R LV+R +  K+D YY  + P  K+ ++  E+  F++D  EFK +++ +  F++
Sbjct:    9 IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMTLEEVSFAA 134
[Close]
BLAST of rna-XM_014656796.2 vs. Araport11
Match: AT5G35338.2 (| methyl-CPG-binding domain 12 | Chr5:13549343-13550124 REVERSE LENGTH=155 | 201606)

HSP 1 Score: 87.4261 bits (215), Expect = 4.771e-22
Identity = 51/156 (32.69%), Postives = 86/156 (55.13%), Query Frame = 0 
Query:   32 AQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKA----NCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKL-DAYYVTPSGKKLRTRNEIGAFLKDNPEF--KGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGD 180
             QC +C KWR+I + + +  ++    + PFVC   +    N SC+ P D    +  TW    P++P  P G+ RS+ +R + +K  D YY  PSG++LR+  E+ +FL ++PE+  +GV+ + F F  PK + D     V++R    K+ K +K +
Sbjct:    2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW----PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNRSQFSFQIPKPLDD---NYVKKRTRPVKRRKSSKDN 148
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V273|A0A1S3V273_VIGRR (methyl-CpG-binding domain-containing protein 4 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770942 PE=4 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 3.961e-130
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 
Query:    1 MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV
Sbjct:    1 MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SS35|A0A0S3SS35_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G240200 PE=4 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 2.349e-128
Identity = 177/181 (97.79%), Postives = 181/181 (100.00%), Query Frame = 0 
Query:    1 MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSC+EPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEI+EQ+DSA+KKAKIAKGDV
Sbjct:    1 MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCEEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIIEQKDSANKKAKIAKGDV 181
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N1Q0|A0A4D6N1Q0_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g1906 PE=4 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.018e-123
Identity = 169/178 (94.94%), Postives = 176/178 (98.88%), Query Frame = 0 
Query:    4 MKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            MKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEE+RSKATEEPF+CSRK NCSCDEPADIEYDSTRTWVIDKPNLPKTPQGF+RSLVLRKDYSKLDAYY+TPSGKKLRTRNEIGAFLKDNPEFKGV+V DFDFSSPKIMQDTIPEIVEQ+DSA+KKAKIAKGDV
Sbjct:    1 MKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEIRSKATEEPFICSRKDNCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPSGKKLRTRNEIGAFLKDNPEFKGVTVADFDFSSPKIMQDTIPEIVEQKDSANKKAKIAKGDV 178
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|V7BI48|V7BI48_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G168400g PE=4 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.785e-122
Identity = 168/181 (92.82%), Postives = 177/181 (97.79%), Query Frame = 0 
Query:    1 MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            M +MKG QEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRV+DTQEEFEEVRSKATEEPFVCSRKAN SCDEPADIEYDSTRTWVIDKPNLPKTPQGF+RSLVLRKDYSKLDAYY+TPSGKKLRTRNEIGAFLKDNP+FKGV+V DFDFSSPKIMQDTIPEIVEQ+DS++KKAKIAKGDV
Sbjct:    1 MNDMKGGQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVMDTQEEFEEVRSKATEEPFVCSRKANGSCDEPADIEYDSTRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPSGKKLRTRNEIGAFLKDNPDFKGVTVADFDFSSPKIMQDTIPEIVEQKDSSNKKAKIAKGDV 181
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F9P8|A0A3Q0F9P8_VIGRR (methyl-CpG-binding domain-containing protein 4 isoform X3 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770942 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.549e-117
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0 
Query:   18 KRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            KRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV
Sbjct:    5 KRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 168
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V1R7|A0A1S3V1R7_VIGRR (methyl-CpG-binding domain-containing protein 4 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770942 PE=4 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 7.294e-117
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 
Query:   19 RTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            RTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV
Sbjct:    7 RTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 169
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TWS0|A0A0L9TWS0_PHAAN (Uncharacterized protein (Fragment) OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g112500 PE=4 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 3.541e-114
Identity = 158/162 (97.53%), Postives = 162/162 (100.00%), Query Frame = 0 
Query:   20 TLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            TLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSC+EPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEI+EQ+DSA+KKAKIAKGDV
Sbjct:    1 TLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCEEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIIEQKDSANKKAKIAKGDV 162
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371H994|A0A371H994_MUCPR (Methyl-CpG-binding domain-containing protein 4 (Fragment) OS=Mucuna pruriens OX=157652 GN=MBD4 PE=4 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 6.697e-113
Identity = 154/178 (86.52%), Postives = 168/178 (94.38%), Query Frame = 0 
Query:    4 MKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            MK +QEIS+TPS+SKRTLSSQGSVDIYAAQCK+CLKWRVIDT EEFEE+RSK TEEPF+CSRKAN SC+EP DIEYDSTRTWVIDKPNLPKTPQGF+RSLVLRKDYSKLDAYY+TP+GKKLRTRNEI AFLKDNPEFK VS+TDFDF SPKIMQDTIPEI+EQ+DSA+KK KIAK DV
Sbjct:    1 MKAAQEISRTPSTSKRTLSSQGSVDIYAAQCKDCLKWRVIDTAEEFEEIRSKVTEEPFLCSRKANSSCEEPGDIEYDSTRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKDVSITDFDFGSPKIMQDTIPEIIEQKDSANKKIKIAKDDV 178
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2SNV4|A0A0B2SNV4_GLYSO (Methyl-CpG-binding domain-containing protein 4 OS=Glycine soja OX=3848 GN=glysoja_035248 PE=4 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 2.046e-112
Identity = 157/178 (88.20%), Postives = 167/178 (93.82%), Query Frame = 0 
Query:    4 MKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            MK  QEISKTPSSSKRTLS QGSVDIYAAQCKNCLKWR IDTQEEFEE+RSK TEEPF+CSRKAN SCDEP DIEYDSTRTWVIDKPNLPKTPQGF+RSLVLRKDYSKLDAYY+TP+GKKLRTRNEI AFLKDNPEFKGVS +DFDFSSPKIMQDTIPEI+EQ+DSA+KK KIAK +V
Sbjct:    1 MKSGQEISKTPSSSKRTLS-QGSVDIYAAQCKNCLKWREIDTQEEFEEIRSKVTEEPFLCSRKANSSCDEPGDIEYDSTRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSASDFDFSSPKIMQDTIPEIIEQKDSANKKVKIAKDEV 177
[Close]
BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Match: tr|C6TGT6|C6TGT6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100802350 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 2.046e-112
Identity = 157/178 (88.20%), Postives = 167/178 (93.82%), Query Frame = 0 
Query:    4 MKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFEEVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFRRSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDFSSPKIMQDTIPEIVEQRDSASKKAKIAKGDV 181
            MK  QEISKTPSSSKRTLS QGSVDIYAAQCKNCLKWR IDTQEEFEE+RSK TEEPF+CSRKAN SCDEP DIEYDSTRTWVIDKPNLPKTPQGF+RSLVLRKDYSKLDAYY+TP+GKKLRTRNEI AFLKDNPEFKGVS +DFDFSSPKIMQDTIPEI+EQ+DSA+KK KIAK +V
Sbjct:    1 MKSGQEISKTPSSSKRTLS-QGSVDIYAAQCKNCLKWREIDTQEEFEEIRSKVTEEPFLCSRKANSSCDEPGDIEYDSTRTWVIDKPNLPKTPQGFKRSLVLRKDYSKLDAYYITPAGKKLRTRNEIAAFLKDNPEFKGVSASDFDFSSPKIMQDTIPEIIEQKDSANKKVKIAKDEV 177
The following BLAST results are available for this feature:
BLAST of rna-XM_014656796.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9LYB9|MBD4_ARATH6.246e-7061.01Methyl-CpG-binding domain-containing protein 4 OS=... [more]
sp|Q5XEN5|MBD1_ARATH5.416e-6257.35Methyl-CpG-binding domain-containing protein 1 OS=... [more]
sp|Q8LA53|MBD2_ARATH3.046e-3442.55Methyl-CpG-binding domain-containing protein 2 OS=... [more]
sp|Q4PSK1|MBD3_ARATH4.371e-2841.22Methyl-CpG-binding domain-containing protein 3 OS=... [more]
sp|Q9FZP6|MBD12_ARATH4.663e-2132.69Putative methyl-CpG-binding domain protein 12 OS=A... [more]
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BLAST of rna-XM_014656796.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 8
Match NameE-valueIdentityDescription
AT3G63030.16.390e-7161.01| methyl-CPG-binding domain 4 | Chr3:23295394-2329... [more]
AT4G22745.15.541e-6357.35| methyl-CPG-binding domain 1 | Chr4:11947421-1194... [more]
AT5G35330.43.116e-3542.55| methyl-CPG-binding domain protein 02 | Chr5:1352... [more]
AT5G35330.33.116e-3542.55| methyl-CPG-binding domain protein 02 | Chr5:1352... [more]
AT5G35330.23.116e-3542.55| methyl-CPG-binding domain protein 02 | Chr5:1352... [more]
AT5G35330.13.116e-3542.55| methyl-CPG-binding domain protein 02 | Chr5:1352... [more]
AT4G00416.14.472e-2941.22| methyl-CPG-binding domain 3 | Chr4:179022-179513... [more]
AT5G35338.24.771e-2232.69| methyl-CPG-binding domain 12 | Chr5:13549343-135... [more]
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BLAST of rna-XM_014656796.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A1S3V273|A0A1S3V273_VIGRR3.961e-130100.00methyl-CpG-binding domain-containing protein 4 iso... [more]
tr|A0A0S3SS35|A0A0S3SS35_PHAAN2.349e-12897.79Uncharacterized protein OS=Vigna angularis var. an... [more]
tr|A0A4D6N1Q0|A0A4D6N1Q0_VIGUN2.018e-12394.94Uncharacterized protein OS=Vigna unguiculata OX=39... [more]
tr|V7BI48|V7BI48_PHAVU1.785e-12292.82Uncharacterized protein OS=Phaseolus vulgaris OX=3... [more]
tr|A0A3Q0F9P8|A0A3Q0F9P8_VIGRR1.549e-117100.00methyl-CpG-binding domain-containing protein 4 iso... [more]
tr|A0A1S3V1R7|A0A1S3V1R7_VIGRR7.294e-117100.00methyl-CpG-binding domain-containing protein 4 iso... [more]
tr|A0A0L9TWS0|A0A0L9TWS0_PHAAN3.541e-11497.53Uncharacterized protein (Fragment) OS=Phaseolus an... [more]
tr|A0A371H994|A0A371H994_MUCPR6.697e-11386.52Methyl-CpG-binding domain-containing protein 4 (Fr... [more]
tr|A0A0B2SNV4|A0A0B2SNV4_GLYSO2.046e-11288.20Methyl-CpG-binding domain-containing protein 4 OS=... [more]
tr|C6TGT6|C6TGT6_SOYBN2.046e-11288.20Uncharacterized protein OS=Glycine max OX=3847 GN=... [more]
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InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 91..156
e-value: 2.1E-12
score: 46.6
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 85..155
score: 15.786256
NoneNo IPR availableGENE3D3.30.890.10coord: 87..161
e-value: 5.0E-15
score: 57.0
NoneNo IPR availableGENE3D3.30.40.100coord: 21..78
e-value: 5.3E-6
score: 27.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..22
NoneNo IPR availablePANTHERPTHR12396METHYL-CPG BINDING PROTEIN, MBDcoord: 18..173
NoneNo IPR availableCDDcd01396MeCP2_MBDcoord: 89..161
e-value: 6.3835E-20
score: 77.4129
IPR011124Zinc finger, CW-typePFAMPF07496zf-CWcoord: 30..76
e-value: 2.4E-9
score: 37.0
IPR011124Zinc finger, CW-typePROSITEPS51050ZF_CWcoord: 24..79
score: 11.805695
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 67..160

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_014656796.2_VrVC1973A-SNU_v1 ID=rna-XM_014656796.2_VrVC1973A-SNU_v1; Name=rna-XM_014656796.2; organism=Vigna radiata; type=mRNA; length=546bp
ATGAAAGAAATGAAAGGAAGTCAAGAAATCTCAAAAACACCTTCGTCTTC
CAAGAGAACACTGTCAAGTCAGGGTTCAGTGGATATATACGCGGCGCAAT
GCAAAAACTGCTTGAAATGGAGAGTGATTGATACACAGGAAGAGTTTGAA
GAGGTTAGAAGTAAAGCCACTGAGGAACCTTTCGTTTGCAGCAGAAAGGC
TAATTGTTCCTGTGATGAACCTGCTGATATTGAATATGATTCCACTCGAA
CGTGGGTCATTGACAAACCTAACCTCCCAAAAACTCCACAAGGTTTTAGG
AGGAGCTTGGTACTTAGAAAAGATTACTCCAAATTGGACGCTTACTACGT
CACACCTTCTGGCAAAAAACTAAGAACCCGCAATGAGATAGGAGCGTTTC
TAAAAGATAATCCAGAATTCAAAGGTGTTAGTGTTACAGATTTTGATTTT
TCTTCCCCAAAGATAATGCAGGACACCATCCCAGAGATAGTTGAGCAGAG
GGATTCTGCTAGCAAGAAAGCTAAGATAGCCAAAGGTGATGTTTGA
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protein sequence of rna-XM_014656796.2_VrVC1973A-SNU_v1

>rna-XM_014656796.2_VrVC1973A-SNU_v1 ID=rna-XM_014656796.2_VrVC1973A-SNU_v1; Name=rna-XM_014656796.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=181bp
MKEMKGSQEISKTPSSSKRTLSSQGSVDIYAAQCKNCLKWRVIDTQEEFE
EVRSKATEEPFVCSRKANCSCDEPADIEYDSTRTWVIDKPNLPKTPQGFR
RSLVLRKDYSKLDAYYVTPSGKKLRTRNEIGAFLKDNPEFKGVSVTDFDF
SSPKIMQDTIPEIVEQRDSASKKAKIAKGDV
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mRNA from alignment at chr08:26864738..26866699-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_014656796.2_VrVC1973A-SNU_v1 ID=rna-XM_014656796.2_VrVC1973A-SNU_v1; Name=rna-XM_014656796.2; organism=Vigna radiata; type=mRNA; length=1962bp; location=Sequence derived from: chr08:26864738..26866699- (Vigna radiata
AAATGCTGGAGATGGAAATTGTATGAGTTGTAAGGGAAGCAACTTATGTG
AATGAAAGAAATGAAAGGAAGTCAAGAAATCTCAAAAACACCTTCGTCTT
CCAAGGTACTTCTCATCTCTTTCTTCAATTAATTTCCTTTGTTTCTCATG
ATTTTGAAGTTAGGGTTTTCTATGCACTAGATCTCCTGCTTTTCAGATTA
ATTTTTCTTCACTTTTCATGGATTCGCTGTAAATAATTGTTTGTTTCTCG
GTCAATTTTACTGCTGTTCTTTGTATCGTAGGTGAATCATATTATCCTGT
CCATCATGCAATGGGCATTGTTCCATTTAATAAAGCTACAAAATTGATAA
TATTTTTCTTTTTTAATGGGTATTACATGTATGTTGCTGTTCGCCTGTAT
GTGTTGGTTTAGTGAGTAGGGTTTGGATCCCTTAAACATATAGTGTTGAT
TCTGGAATTTACGATTCACGTCTATGGAAAAAAATATAATAGACCTATCC
TAGGGAAAGGGAAAAAATTGTTAATGTGAGGTTTTGGGTGATAATTTTAG
ATTATTAAGTGCTCAAATGGGCTAAGGATGAGATGAGACATCAGAAATTT
CAATAAAGTTTAACCAAATTTGAGGAACTTGGGTGCGTAAGGCTCCACAC
CTATTTGTATAATGTTCCTTAACTTTTCCTGACATGTTTGTGACATTTCA
GAAGGAACTCAGATCCTATGCAAAATCTGGATGATTGATGGATTAACATA
ATAGTAGTTAATCAAGAGAGAGAATATCAATGGTTAATATATCTCCTGCA
GAGACAGCAGAGGATCTATGTTCTTTCAGAAGGTGGTACGTTATTGCTCT
GTCCTTGTATGCGCCTGTGGTGGCGCTCGTGTATATGATATAAGCTTTAT
GGCCATGATTTTAGCAGTCAAATTAGATGGTAGTTATGTAAATCATATTC
CCTGAATTATTCTCAGTTTAGTGACCTGGCTGGGGTATCATTGGCCAGTT
CTGTTAACCAATTGATTCATAGCTCCTCAAGCATAGAGCCTGAAAGTTGT
AAGCGCTCGTTGAAGTCAGCTTGTGCAGCAGACAGTTTAGTTAGGAATTG
GTATTTGGTTGATAAACTTTTATACATTAGAACTTGCATTACCAACCAAT
GCTTGATGTTTAGATTGTTTTTCCGCGGCTACGTCTAAAGTGGTTAGTGT
TGGTTTCTACCGTTGAAAGGAATTAAACTAATAGATTCACTGCACAGACA
AAAGTGATTAAAAAATTAAAACTGAAGTTTGCATATTTGAATGTTTGCCA
AACAGAGAACACTGTCAAGTCAGGGTTCAGTGGATATATACGCGGCGCAA
TGCAAAAACTGCTTGAAATGGAGAGTGATTGATACACAGGAAGAGTTTGA
AGAGGTTAGAAGTAAAGCCACTGAGGAACCTTTCGTTTGCAGCAGAAAGG
CTAATTGTTCCTGTGATGAACCTGCTGATATTGAATATGATTCCACTCGA
ACGTGGGTCATTGACAAACCTAACCTCCCAAAAACTCCACAAGGTTTTAG
GAGGAGCTTGGTACTTAGAAAAGATTACTCCAAATTGGACGCTTACTACG
TCACACCTTCTGGCAAAAAACTAAGAACCCGCAATGAGATAGGAGCGTTT
CTAAAAGATAATCCAGAATTCAAAGGTGTTAGTGTTACAGATTTTGATTT
TTCTTCCCCAAAGATAATGCAGGACACCATCCCAGAGATAGTTGAGCAGA
GGGATTCTGCTAGCAAGAAAGCTAAGATAGCCAAAGGTGATGTTTGAGGA
ATATTATCTCAAGTTTGCATGGTGCAAAGATGTTGATTCTGGTTGGTTTG
TTGGATATTACTTTAGAGATTGTTGTAAAATCATGCGTACGAACGAATTT
TGTTCATGCCTTTGTATTATATTTTAATTTTAGTTTTAATGTTAATGTTA
ATGTTATTATCA
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Coding sequence (CDS) from alignment at chr08:26864738..26866699-

>rna-XM_014656796.2_VrVC1973A-SNU_v1 ID=rna-XM_014656796.2_VrVC1973A-SNU_v1; Name=rna-XM_014656796.2; organism=Vigna radiata; type=CDS; length=546bp; location=Sequence derived from: chr08:26864738..26866699- (Vigna radiata
ATGAAAGAAATGAAAGGAAGTCAAGAAATCTCAAAAACACCTTCGTCTTC
CAAGAGAACACTGTCAAGTCAGGGTTCAGTGGATATATACGCGGCGCAAT
GCAAAAACTGCTTGAAATGGAGAGTGATTGATACACAGGAAGAGTTTGAA
GAGGTTAGAAGTAAAGCCACTGAGGAACCTTTCGTTTGCAGCAGAAAGGC
TAATTGTTCCTGTGATGAACCTGCTGATATTGAATATGATTCCACTCGAA
CGTGGGTCATTGACAAACCTAACCTCCCAAAAACTCCACAAGGTTTTAGG
AGGAGCTTGGTACTTAGAAAAGATTACTCCAAATTGGACGCTTACTACGT
CACACCTTCTGGCAAAAAACTAAGAACCCGCAATGAGATAGGAGCGTTTC
TAAAAGATAATCCAGAATTCAAAGGTGTTAGTGTTACAGATTTTGATTTT
TCTTCCCCAAAGATAATGCAGGACACCATCCCAGAGATAGTTGAGCAGAG
GGATTCTGCTAGCAAGAAAGCTAAGATAGCCAAAGGTGATGTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001739Methyl_CpG_DNA-bd
IPR011124Znf_CW
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0008270zinc ion binding