rna-XM_014657164.2

Transcript Overview


Name	rna-XM_014657164.2
Unique Name	rna-XM_014657164.2_VrVC1973A-SNU_v1
Type	mRNA
Organism	Vigna radiata (Mung bean, green gram)
Sequence length	381
Product	probable prefoldin subunit 4

References

External references for this mRNA


Database	Accession
GeneID	106771226
Genbank	XM_014657164.2

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr08	chromosome	chr08:32957926..32959714 +	Vigna radiata cv. VC1973A genome v6.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Vigna radiata cv. VC1973A genome v6.0	2023-06-13
InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11	2023-06-20
Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL	2023-06-20

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
anvrvL0655	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL0807	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anvrvL1112	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
caivrvL290	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
caivrvL432	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
cavrvL231	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavrvL238	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
cavrvL361	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ccvrvL0646	Cajanus cajan Asha genome v1.0	Cajanus cajan
ccvrvL0813	Cajanus cajan Asha genome v1.0	Cajanus cajan
crvrvL274	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crvrvL280	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
crvrvL373	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
psvrvL561	Pisum sativum Cameor genome v1a	Pisum sativum
psvrvL573	Pisum sativum Cameor genome v1a	Pisum sativum
pvvrvL523	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvvrvL568	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
vfhvrvL425	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvrvL450	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvrvL608	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vfhvrvL613	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
vrvvssR790	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvssR807	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvvssR830	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
vrvzwsR634	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvzwsR681	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
vrvvuaR570	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvvuR619	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
vrvvuaR589	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
vrvvuR621	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
canvrvL211	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
canvrvL335	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
avjvrvL119	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvrvL300	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
avjvrvL395	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carvrvL216		Cicer arietinum
carvrvL331		Cicer arietinum
carvrvL350		Cicer arietinum
ccavrvL236	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL280	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
ccavrvL363	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
vrvvvaR719	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvvaR791	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvvaR806	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
vrvvstR651	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR665	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vrvvstR680	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
vasvrvL406	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvrvL459	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
vasvrvL589	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
pvfvrvL060	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvrvL483	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvrvL529	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
vrvvunR579	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
vrvvunR581	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
rna-XM_004495555.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
XM_058914574.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vigun07g155800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Phvul.007G187900.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vigst.08G125200.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vigan.08G161600.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
evm.model.Chr07.1270	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-TanjilR_10126	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-KK1_007162	Cajanus cajan Asha genome v1.0	Cajanus cajan
jg3106.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigun07g155800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Psat06G0392600-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Cc_v2.0_04040.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
rna-TanjilR_31705	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
PvulFLAVERTChr07.1205	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Ca_03759	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Psat6g145040.1	Pisum sativum Cameor genome v1a	Pisum sativum
Va02G053550.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vfaba.Hedin2.R1.3g081480.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-LOC106771226	gene-LOC106771226_VrVC1973A-SNU_v1	Vigna radiata	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
exon-XM_014657164.2-1	exon-XM_014657164.2-1_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_014657164.2-2	exon-XM_014657164.2-2_VrVC1973A-SNU_v1	Vigna radiata	exon
exon-XM_014657164.2-3	exon-XM_014657164.2-3_VrVC1973A-SNU_v1	Vigna radiata	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
cds-XP_014512650.1	cds-XP_014512650.1_VrVC1973A-SNU_v1	Vigna radiata	CDS
cds-XP_014512650.1	cds-XP_014512650.1_VrVC1973A-SNU_v1_2	Vigna radiata	CDS
cds-XP_014512650.1	cds-XP_014512650.1_VrVC1973A-SNU_v1_3	Vigna radiata	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-XM_014657164.2_VrVC1973A-SNU_v1	rna-XM_014657164.2_VrVC1973A-SNU_v1	Vigna radiata	polypeptide
rna-XM_014657164.2_VrVC1973A-SNU_v1	rna-XM_014657164.2_VrVC1973A-SNU_v1-protein	Vigna radiata	polypeptide

Homology

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M4B5|PFD4_ARATH (Probable prefoldin subunit 4 OS=Arabidopsis thaliana OX=3702 GN=AIP3 PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.648e-63
Identity = 95/129 (73.64%), Postives = 110/129 (85.27%), Query Frame = 0

Query:    1 MQQGG---GSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQ G   GSE EVTWEDQQNIN F RLNNR H+L+D+IK AKE  +NLEDA NELIL DEE+VRFQIGEVFAHVP+D+VE++IE+MKE T + LEKLE+EKES++ QMA LKK+LYAKF DSINLEED
Sbjct:    1 MQQQGSKSGSEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 129

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9M4C4|PFD4_AVEFA (Probable prefoldin subunit 4 OS=Avena fatua OX=4499 GN=VIP3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.119e-62
Identity = 99/126 (78.57%), Postives = 116/126 (92.06%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQG G+E +VTWEDQQNIN+FGRLNNRFHEL DEI++AKE+N+NLEDA NELIL DE+VVRFQIGEVFAH+P D+VE+R+EQMKE  ++KLE+LEEEKES+LAQMAELKKILY KF D+INLEED
Sbjct:    1 MQQGDGTEAQVTWEDQQNINRFGRLNNRFHELTDEIRLAKEANENLEDAGNELILCDEDVVRFQIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILYGKFKDAINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q9NQP4|PFD4_HUMAN (Prefoldin subunit 4 OS=Homo sapiens OX=9606 GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.373e-22
Identity = 49/118 (41.53%), Postives = 79/118 (66.95%), Query Frame = 0

Query:   11 VTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEV--VRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            VT+EDQQ INKF R  +R  EL++EI++ K+   NLEDA ++++L D++   + +QIG+VF    ++E +  +E+ K+   ++++ LE   ES+   +A+LK  LYAKF  +INLE D
Sbjct:   15 VTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q2TBR6|PFD4_BOVIN (Prefoldin subunit 4 OS=Bos taurus OX=9913 GN=PFDN4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.127e-22
Identity = 49/118 (41.53%), Postives = 78/118 (66.10%), Query Frame = 0

Query:   11 VTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEV--VRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            VT+EDQQ INKF R  +R  EL++EI++ K+   NLEDA  +++L D++   + +QIG+VF    ++E +  +E+ K+   ++++ LE   ES+   +A+LK  LYAKF  +INLE D
Sbjct:   15 VTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|P53900|PFD4_YEAST (Prefoldin subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GIM3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.493e-20
Identity = 47/125 (37.60%), Postives = 82/125 (65.60%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDE-EVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLE 124
            + QG  + T+VT+EDQQ IN+F +L  R   +  E+ + +E  + L+D S E+ L DE E V++++G++F  + + +V +++E+  E    K+E LE+++  + +++  LK ILYAKF D+INLE
Sbjct:    4 LPQGQRNNTQVTFEDQQKINEFSKLIMRKDAIAQELSLQREEKEYLDDVSLEIELIDEDEPVQYKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKAILYAKFGDNINLE 128

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q54TB7|PFD4_DICDI (Probable prefoldin subunit 4 OS=Dictyostelium discoideum OX=44689 GN=pfdn4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.427e-18
Identity = 49/119 (41.18%), Postives = 73/119 (61.34%), Query Frame = 0

Query:    8 ETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEV-VRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEE 125
            ETEV   DQ+ IN FGRLNNR HEL  E K  +E  +   D+ ++L + D++   ++ +GE F  V K++ ES IE+      + ++K++ +   +  +  ELK ILYAKF +SINLEE
Sbjct:   14 ETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGEAFLEVNKEDAESLIEKYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNSINLEE 132

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|Q17435|PFD4_CAEEL (Probable prefoldin subunit 4 OS=Caenorhabditis elegans OX=6239 GN=pfd-4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.657e-16
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 0

Query:    9 TEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEE---VVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLE 124
            T+V+ EDQ  +NKF R      +L+ ++K AK   DN+ +AS+E++L D+E    +  +IG  F H   D +   +E  K    + L +   E +++ A M ++KK+LYAKF D INL+
Sbjct:    5 TKVSAEDQALLNKFARSYQTQTQLKADVKEAKTLIDNINEASDEILLLDDEDSASIPCRIGSCFVHFNGDSLNEHLEGKKTTAEKVLSEKTSELDAISADMEQIKKVLYAKFGDQINLD 123

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Match: sp|A8X0Z1|PFD4_CAEBR (Probable prefoldin subunit 4 OS=Caenorhabditis briggsae OX=6238 GN=pfd-4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.090e-14
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 0

Query:    6 GSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEE---VVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLE 124
             ++ +V+ EDQ  +NKF R      +L+ E K  K   +N+ +A++E++L D+E    +  +IG  F H   D +   +E  K  T   L +   E E++ A+M  +KK+LY KF D INL+
Sbjct:    2 ATQAKVSAEDQALLNKFARSYQLQTQLKAECKEMKTLVENINEATDEVLLLDDEDSASIPCRIGSCFVHFNSDSLNEHLEAKKASTETVLAEKTNELETITAEMERIKKVLYGKFGDQINLD 123

[Close]

BLAST of rna-XM_014657164.2 vs. Araport11
Match: AT1G08780.1 (| ABI3-interacting protein 3 | Chr1:2809925-2811126 REVERSE LENGTH=129 | 201606)

HSP 1 Score: 191.815 bits (486), Expect = 3.733e-64
Identity = 95/129 (73.64%), Postives = 110/129 (85.27%), Query Frame = 0

Query:    1 MQQGG---GSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQ G   GSE EVTWEDQQNIN F RLNNR H+L+D+IK AKE  +NLEDA NELIL DEE+VRFQIGEVFAHVP+D+VE++IE+MKE T + LEKLE+EKES++ QMA LKK+LYAKF DSINLEED
Sbjct:    1 MQQQGSKSGSEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 129

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N3B8|A0A4D6N3B8_VIGUN (Prefoldin subunit 4 OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g2452 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.976e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SQ23|A0A0S3SQ23_PHAAN (Prefoldin subunit 4 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G161600 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.976e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V2X5|A0A1S3V2X5_VIGRR (Prefoldin subunit 4 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771226 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.976e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2PZE9|A0A0B2PZE9_GLYSO (Prefoldin subunit 4 OS=Glycine soja OX=3848 GN=D0Y65_054895 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 6.633e-82
Identity = 123/126 (97.62%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKE+NDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVE+RIEQ+KEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVENRIEQIKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|C6SXC9|C6SXC9_SOYBN (Prefoldin subunit 4 OS=Glycine max OX=3847 GN=100499849 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.099e-81
Identity = 122/126 (96.83%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKE+NDNLEDASNELILTDEEV+RFQIGEVFAHVPKDEVE+RIEQ+KEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVIRFQIGEVFAHVPKDEVENRIEQIKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|I1LBM5|I1LBM5_SOYBN (Prefoldin subunit 4 OS=Glycine max OX=3847 GN=GLYMA_10G162900 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 7.102e-81
Identity = 120/126 (95.24%), Postives = 125/126 (99.21%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKE+NDNLEDASNELILTDEEV+RFQIGEVFAHVPKDEVE+RIEQ+KEVTSQKL KLEEEKES+LAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVIRFQIGEVFAHVPKDEVENRIEQIKEVTSQKLAKLEEEKESILAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2Q8U7|A0A0B2Q8U7_GLYSO (Prefoldin subunit 4 OS=Glycine soja OX=3848 GN=D0Y65_027249 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 7.102e-81
Identity = 120/126 (95.24%), Postives = 125/126 (99.21%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKE+NDNLEDASNELILTDEEV+RFQIGEVFAHVPKDEVE+RIEQ+KEVTSQKL KLEEEKES+LAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVIRFQIGEVFAHVPKDEVENRIEQIKEVTSQKLAKLEEEKESILAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|V7BJS2|V7BJS2_PHAVU (Prefoldin subunit 4 OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G187900g PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.892e-80
Identity = 119/126 (94.44%), Postives = 125/126 (99.21%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKE+NDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVE+RIEQ+KEVT+QKLEKLEEEK S++AQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVENRIEQVKEVTTQKLEKLEEEKASIVAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|C6SXR5|C6SXR5_SOYBN (Prefoldin subunit 4 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.657e-79
Identity = 119/126 (94.44%), Postives = 124/126 (98.41%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGG SETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKE+NDNLEDASNELILTDEEV+RFQIGEVFAHVPKDEVE+RIEQ+KEVTSQKL KLEEEKES+LAQMAELKKILYAKFNDSINLEED
Sbjct:    1 MQQGGRSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKETNDNLEDASNELILTDEEVIRFQIGEVFAHVPKDEVENRIEQIKEVTSQKLAKLEEEKESILAQMAELKKILYAKFNDSINLEED 126

[Close]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Match: tr|I3SEP8|I3SEP8_MEDTR (Prefoldin subunit 4 OS=Medicago truncatula OX=3880 GN=25484632 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.697e-77
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0

Query:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKESVLAQMAELKKILYAKFNDSINLEED 126
            MQQGGGSETEVTWEDQQNINKFGRLNNR HEL DEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQM+E TSQKLEKLEEEK+SV+AQM+ELKKILY KF +SINLEED
Sbjct:    1 MQQGGGSETEVTWEDQQNINKFGRLNNRLHELHDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMQEATSQKLEKLEEEKQSVVAQMSELKKILYGKFGESINLEED 126

The following BLAST results are available for this feature:

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
BLAST of rna-XM_014657164.2 vs. Araport11
BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL

BLAST of rna-XM_014657164.2 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
sp\|Q9M4B5\|PFD4_ARATH	3.648e-63	73.64	Probable prefoldin subunit 4 OS=Arabidopsis thalia...	[more]
sp\|Q9M4C4\|PFD4_AVEFA	1.119e-62	78.57	Probable prefoldin subunit 4 OS=Avena fatua OX=449...	[more]
sp\|Q9NQP4\|PFD4_HUMAN	3.373e-22	41.53	Prefoldin subunit 4 OS=Homo sapiens OX=9606 GN=PFD...	[more]
sp\|Q2TBR6\|PFD4_BOVIN	7.127e-22	41.53	Prefoldin subunit 4 OS=Bos taurus OX=9913 GN=PFDN4...	[more]
sp\|P53900\|PFD4_YEAST	2.493e-20	37.60	Prefoldin subunit 4 OS=Saccharomyces cerevisiae (s...	[more]
sp\|Q54TB7\|PFD4_DICDI	1.427e-18	41.18	Probable prefoldin subunit 4 OS=Dictyostelium disc...	[more]
sp\|Q17435\|PFD4_CAEEL	1.657e-16	36.13	Probable prefoldin subunit 4 OS=Caenorhabditis ele...	[more]
sp\|A8X0Z1\|PFD4_CAEBR	2.090e-14	33.61	Probable prefoldin subunit 4 OS=Caenorhabditis bri...	[more]

BLAST of rna-XM_014657164.2 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G08780.1	3.733e-64	73.64	\| ABI3-interacting protein 3 \| Chr1:2809925-281112...	[more]

BLAST of rna-XM_014657164.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
tr\|A0A4D6N3B8\|A0A4D6N3B8_VIGUN	8.976e-84	100.00	Prefoldin subunit 4 OS=Vigna unguiculata OX=3917 G...	[more]
tr\|A0A0S3SQ23\|A0A0S3SQ23_PHAAN	8.976e-84	100.00	Prefoldin subunit 4 OS=Vigna angularis var. angula...	[more]
tr\|A0A1S3V2X5\|A0A1S3V2X5_VIGRR	8.976e-84	100.00	Prefoldin subunit 4 OS=Vigna radiata var. radiata ...	[more]
tr\|A0A0B2PZE9\|A0A0B2PZE9_GLYSO	6.633e-82	97.62	Prefoldin subunit 4 OS=Glycine soja OX=3848 GN=D0Y...	[more]
tr\|C6SXC9\|C6SXC9_SOYBN	1.099e-81	96.83	Prefoldin subunit 4 OS=Glycine max OX=3847 GN=1004...	[more]
tr\|I1LBM5\|I1LBM5_SOYBN	7.102e-81	95.24	Prefoldin subunit 4 OS=Glycine max OX=3847 GN=GLYM...	[more]
tr\|A0A0B2Q8U7\|A0A0B2Q8U7_GLYSO	7.102e-81	95.24	Prefoldin subunit 4 OS=Glycine soja OX=3848 GN=D0Y...	[more]
tr\|V7BJS2\|V7BJS2_PHAVU	3.892e-80	94.44	Prefoldin subunit 4 OS=Phaseolus vulgaris OX=3885 ...	[more]
tr\|C6SXR5\|C6SXR5_SOYBN	1.657e-79	94.44	Prefoldin subunit 4 OS=Glycine max OX=3847 PE=2 SV...	[more]
tr\|I3SEP8\|I3SEP8_MEDTR	2.697e-77	92.06	Prefoldin subunit 4 OS=Medicago truncatula OX=3880...	[more]

InterPro

Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 16..119 e-value: 5.1E-22 score: 77.8
IPR016661	Prefoldin, subunit 4	PIRSF	PIRSF016477	Prefoldin_4	coord: 1..125 e-value: 2.8E-42 score: 136.7
IPR016661	Prefoldin, subunit 4	PANTHER	PTHR21100	PREFOLDIN SUBUNIT 4	coord: 4..125
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 16..116

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr08:32957926..32959714+
coding sequence from alignment at chr08:32957926..32959714+

mRNA sequence

>rna-XM_014657164.2_VrVC1973A-SNU_v1 ID=rna-XM_014657164.2_VrVC1973A-SNU_v1; Name=rna-XM_014657164.2; organism=Vigna radiata; type=mRNA; length=381bp
ATGCAGCAGGGGGGTGGATCTGAGACAGAAGTGACGTGGGAGGACCAACA
GAACATCAACAAATTTGGAAGGTTGAATAATCGCTTTCACGAGCTTGAGG
ATGAGATCAAAATCGCTAAGGAATCAAATGATAATTTGGAGGATGCAAGC
AACGAGTTGATTCTCACTGATGAAGAGGTGGTTCGGTTTCAAATAGGGGA
GGTTTTCGCTCATGTGCCAAAGGATGAAGTTGAGAGCAGGATTGAACAGA
TGAAAGAGGTGACGAGTCAAAAGTTAGAAAAACTTGAAGAGGAGAAAGAA
TCTGTACTTGCTCAGATGGCTGAACTGAAGAAAATTTTGTATGCAAAGTT
CAATGACTCGATCAACCTTGAGGAGGATTAG

protein sequence of rna-XM_014657164.2_VrVC1973A-SNU_v1

>rna-XM_014657164.2_VrVC1973A-SNU_v1 ID=rna-XM_014657164.2_VrVC1973A-SNU_v1; Name=rna-XM_014657164.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=126bp
MQQGGGSETEVTWEDQQNINKFGRLNNRFHELEDEIKIAKESNDNLEDAS
NELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMKEVTSQKLEKLEEEKE
SVLAQMAELKKILYAKFNDSINLEED

mRNA from alignment at chr08:32957926..32959714+

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-XM_014657164.2_VrVC1973A-SNU_v1 ID=rna-XM_014657164.2_VrVC1973A-SNU_v1; Name=rna-XM_014657164.2; organism=Vigna radiata; type=mRNA; length=1789bp; location=Sequence derived from: chr08:32957926..32959714+ (Vigna radiata
tttttGGCATGCCTCTTCATTTTAAATCCACGGAATCCTATTAACATTTC
AAGGGAGTCATTAGTCATCCTGGTATCGTAGTCGGAAACCCTATTTTGAA
TTCGAATCACAAAATGCAGCAGGTAATGGGAAACCATGATAACTCTTCAG
ATTGCACTTTGCTATTTCGTCGGCTTCATGTTAAAGCTGatcatttgttt
ttaatccGAAAAGGGGGGTGGATCTGAGACAGAAGTGACGTGGGAGGACC
AACAGAACATCAACAAATTTGGAAGGTTGAATAATCGCTTTCACGAGCTT
GAGGATGAGATCAAAATCGCTAAGGTATTCTATGCAGCTCATTAATTCGT
GTTCAGTTTCTACGCTATCATCCCTTTGTGTTTAGTGTTTGGGCAGAGCA
TTTTATTTACTTGTTTGGTTATATTTATCGAAATCGCTCTGTGCTTAAGA
TTAAGAACTTATGACGAACTCCTAGAGTTAATGTAATGAATTTCATTTTG
CAAACTGGGTTTGCTAGACCAACTTTCATATTGTTATCAATTGAAACACG
ATTCCAAGCCAAATGTTGGTTTGTAAACCTACTTTTGAGGGAAACCAAAC
ATCATCAATTGAGTTTACTGGGACACATGTGAATTGATGGTAGCAAAAGG
GTATTCCAAACTTTGCCTTGAACTACTTTATGTCAATCCTGATACTTTTT
TTAGCTTTTCATTAATATATCTATCCTTGGGTGGATGCCTTTGGTAGAGA
CAGGACGTAAGTGAATAATTTCTTTGTATCAATACCAAAATTTCCCTGGA
TCCTGGTGAATTATGTTAGGAtagtcatttaaaattcttaccAATACTAT
AGCAGCGGACTGAAAGAACATAGATACTGTGTGAAGTTAAGAAAATTGAG
TGTCAATTCTAAACTGAATTAGGGGAAAGATAGAAGACAATAACACGATT
ATATCCTGCATCGAGAGTATGTGGActgactaattctaattttgctTGAG
TAACCTACTCAAGTAACATCCTTAACATACGCACAAAAGGTTTAGATTtc
agttttattaatttgtctGATCTACTCTCtgtttcaatatatttaaacac
ACGCACAACGGCATAATGAAATTTAGTTGTCTTGTTCGTGAAGTGTCTGT
TCTGCTAGTCCTGctgtttatttaatttcactGCCATCCGAGCATTTTGC
CATGGTAAATTTATTTGGCTTCTTTTTTCATAGTATGATGCAAATACAAc
aaggtttttttttatagGAATCAAATGATAATTTGGAGGATGCAAGCAAC
GAGTTGATTCTCACTGATGAAGAGGTGGTTCGGTTTCAAATAGGGGAGGT
TTTCGCTCATGTGCCAAAGGATGAAGTTGAGAGCAGGATTGAACAGATGA
AAGAGGTGACGAGTCAAAAGTTAGAAAAACTTGAAGAGGAGAAAGAATCT
GTACTTGCTCAGATGGCTGAACTGAAGAAAATTTTGTATGCAAAGTTCAA
TGACTCGATCAACCTTGAGGAGGATTAGGTACTTACTTCTTGTTGATAGT
TATCTACTTGgttactttttttgtttatatgacCTATTGGGCCTCTGAAA
TTTGAATCATTTTGtctatttcaattttagaacGTGTGTTGTTTTGCTTG
AACCTCTTTCAAACGTTGGCCTAGGTTTCTGCTTTCTTTGGCTTCTTGAA
TTTCATGTTCCCTTAAAATATCTTCAAGGGGAGAAGGGGTGTGTAAAATC
TGCTCTATTATTGAGGTCATCGAGTATCTGAATTAACTA

Coding sequence (CDS) from alignment at chr08:32957926..32959714+

>rna-XM_014657164.2_VrVC1973A-SNU_v1 ID=rna-XM_014657164.2_VrVC1973A-SNU_v1; Name=rna-XM_014657164.2; organism=Vigna radiata; type=CDS; length=381bp; location=Sequence derived from: chr08:32957926..32959714+ (Vigna radiata
ATGCAGCAGGGGGGTGGATCTGAGACAGAAGTGACGTGGGAGGACCAACA
GAACATCAACAAATTTGGAAGGTTGAATAATCGCTTTCACGAGCTTGAGG
ATGAGATCAAAATCGCTAAGGAATCAAATGATAATTTGGAGGATGCAAGC
AACGAGTTGATTCTCACTGATGAAGAGGTGGTTCGGTTTCAAATAGGGGA
GGTTTTCGCTCATGTGCCAAAGGATGAAGTTGAGAGCAGGATTGAACAGA
TGAAAGAGGTGACGAGTCAAAAGTTAGAAAAACTTGAAGAGGAGAAAGAA
TCTGTACTTGCTCAGATGGCTGAACTGAAGAAAATTTTGTATGCAAAGTT
CAATGACTCGATCAACCTTGAGGAGGATTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002777	PFD_beta-like
IPR016661	PFDN4

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

Search form

rna-XM_014657164.2