rna-XM_014657558.2
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3V4G9|A0A1S3V4G9_VIGRR (uncharacterized protein LOC106771566 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771566 PE=4 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 3.542e-87 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKESGFH 126 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKESGFH Sbjct: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKESGFH 126
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3SQE1|A0A0S3SQE1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G169500 PE=4 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 9.440e-69 Identity = 107/125 (85.60%), Postives = 112/125 (89.60%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKESGF 125 MLIVKPYICRTQ SFSISDHP PF I SIRFNSHILNPIS RFSQ PS TIACVKR DWSQ SNRTILQLASAVAFNLKILPEPFNSIAGEI+R+D NTLSRL+GGGR+R TGKWRARKKES + Sbjct: 1 MLIVKPYICRTQCSFSISDHPLPFLIPSIRFNSHILNPISLRFSQSRPSPTIACVKRHDWSQPSNRTILQLASAVAFNLKILPEPFNSIAGEISRNDTNTLSRLIGGGRKRTTGKWRARKKESAW 125
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|V7BGV5|V7BGV5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_007G181200g PE=4 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 5.486e-56 Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKES 123 M+ VKPYIC SFSISD P PF IS + NSHILNPISFR SQ HP+LTIAC KRRD SQ+SN+TILQLAS +AFNLKILPEPFNSIAGEIAR+D NTL+RLVGG R R+ GKWRARKK+S Sbjct: 1 MVKVKPYIC---SSFSISDQPPPFPISLLHLNSHILNPISFRLSQSHPALTIACAKRRDSSQSSNQTILQLASTLAFNLKILPEPFNSIAGEIARTDSNTLTRLVGGRRGRIAGKWRARKKKS 120
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6N3D5|A0A4D6N3D5_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g2380 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.000e-48 Identity = 91/113 (80.53%), Postives = 96/113 (84.96%), Query Frame = 0 Query: 11 TQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKES 123 TQ SFSIS+HP P SISSI+ NSHILNPIS R SQ +P LTIAC RRDWSQ SNRTILQLAS VAFNLKILPEPFNSIAGEIARSD NTLSRL+GG RRR+ GKWR RKK S Sbjct: 4 TQCSFSISNHPLPSSISSIQINSHILNPISLRLSQSYPCLTIACATRRDWSQPSNRTILQLASTVAFNLKILPEPFNSIAGEIARSDSNTLSRLIGGRRRRVAGKWRVRKKVS 116
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445F9E1|A0A445F9E1_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_054964 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.575e-46 Identity = 85/126 (67.46%), Postives = 91/126 (72.22%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRD-WSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKESGF 125 ML VKPYIC TQ FSISDHP PF IS I S LNPIS R SQ HP+ TI C KRR WSQ SNR ILQLAS VAFNLKILPEPFNS+AGEIAR D TLS LVGG R ++T R KK+S + Sbjct: 1 MLKVKPYICTTQYPFSISDHPLPFPISVIHIYSRFLNPISLRLSQSHPTPTILCAKRRGGWSQPSNRKILQLASTVAFNLKILPEPFNSLAGEIARGDCQTLSLLVGGRRGKITANRRLTKKKSAW 126
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|K7N579|K7N579_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G232600 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.575e-46 Identity = 85/126 (67.46%), Postives = 91/126 (72.22%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRD-WSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKESGF 125 ML VKPYIC TQ FSISDHP PF IS I S LNPIS R SQ HP+ TI C KRR WSQ SNR ILQLAS VAFNLKILPEPFNS+AGEIAR D TLS LVGG R ++T R KK+S + Sbjct: 1 MLKVKPYICTTQYPFSISDHPLPFPISVIHIYSRFLNPISLRLSQSHPTPTILCAKRRGGWSQPSNRKILQLASTVAFNLKILPEPFNSLAGEIARGDCQTLSLLVGGRRGKITANRRLTKKKSAW 126
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|A0A445IN20|A0A445IN20_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_027178 PE=4 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 2.396e-43 Identity = 83/126 (65.87%), Postives = 89/126 (70.63%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRR-RMTGKWRARKKESGF 125 ML VKPYIC T FSISDHP F IS ILNPIS R SQ HP+ TI C KRR WSQ SNR ILQLAS VAFNLKILPEPFNS+AGEIAR D TLS LVGGGRR ++ R KK+S + Sbjct: 1 MLKVKPYICTTHYPFSISDHPLSFPIS-------ILNPISLRLSQSHPTPTIPCAKRRGWSQPSNRKILQLASTVAFNLKILPEPFNSLAGEIARGDSQTLSFLVGGGRRGKIAANRRVTKKKSAW 119
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|I1LBD6|I1LBD6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G155700 PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 5.911e-43 Identity = 83/126 (65.87%), Postives = 89/126 (70.63%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRR-RMTGKWRARKKESGF 125 ML VKPYIC T FSISDHP F IS ILNPIS R SQ HP+ TI C KRR WSQ SNR ILQLAS VAFNLKILPEPFNS+AGEIAR D TLS LVGGGRR ++ R KK+S + Sbjct: 1 MLKVKPYICTTHYPFSISDHPLSFPIS-------ILNPISLRLSQSHPTPTIPCAKRRGWSQPSNRKILQLASTVAFNLKILPEPFNSLAGEIARGDSQTLSFLVGGGRRGKIAPNRRVTKKKSAW 119
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|A0A371FWA5|A0A371FWA5_MUCPR (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_36603 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.916e-30 Identity = 66/123 (53.66%), Postives = 75/123 (60.98%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFHPSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDINTLSRLVGGGRRRMTGKWRARKKES 123 ML VKPYI RTQ SISD IS R SQ HP+ TI C KR WSQ SNR +LQLAS +AFNLKILPEP NS+AG+ AR D +TL+ LVGG R ++T A KK S Sbjct: 1 MLNVKPYISRTQCPLSISD-------------------ISLRLSQSHPTPTIVCAKRHGWSQPSNRKMLQLASTIAFNLKILPEPLNSLAGQFARGDCDTLNHLVGGWRGKVTRNRNASKKNS 104
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Match: tr|A0A2K3JPQ8|A0A2K3JPQ8_TRIPR (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g049647 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 6.780e-25 Identity = 66/128 (51.56%), Postives = 76/128 (59.38%), Query Frame = 0 Query: 1 MLIVKPYICRTQGSFSISDHPHPFSISSIRFNSHILNPISFRFSQFH----PSLTIACVKRRDWSQASNRTILQLASAVAFNLKILPEPFNSIAGEIARSDIN---TLSRLVGGGRRRMTGKWRARKK 121 M +KPYI TQ SIS+ PF S I N H+ NP F SQ H P I C KR+ WS NR ILQLAS VAFNLKILPEPFNS G+IARS+ N L+ L+GG R + + K R KK Sbjct: 1 MAKLKPYISATQSLPSISNPTLPFPNSKININYHLRNPKPFPISQSHSTPKPQQIIVCAKRQQWS---NRKILQLASKVAFNLKILPEPFNSFLGQIARSNSNENRILNSLIGGVRVKSSSKKRNGKK 125 The following BLAST results are available for this feature:
BLAST of rna-XM_014657558.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_014657558.2 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 0
BLAST of rna-XM_014657558.2 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_014657558.2_VrVC1973A-SNU_v1 ID=rna-XM_014657558.2_VrVC1973A-SNU_v1; Name=rna-XM_014657558.2; organism=Vigna radiata; type=mRNA; length=381bpback to top protein sequence of rna-XM_014657558.2_VrVC1973A-SNU_v1 >rna-XM_014657558.2_VrVC1973A-SNU_v1 ID=rna-XM_014657558.2_VrVC1973A-SNU_v1; Name=rna-XM_014657558.2_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=126bpback to top mRNA from alignment at chr08:32192107..32193005+ Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_014657558.2_VrVC1973A-SNU_v1 ID=rna-XM_014657558.2_VrVC1973A-SNU_v1; Name=rna-XM_014657558.2; organism=Vigna radiata; type=mRNA; length=899bp; location=Sequence derived from: chr08:32192107..32193005+ (Vigna radiataback to top Coding sequence (CDS) from alignment at chr08:32192107..32193005+ >rna-XM_014657558.2_VrVC1973A-SNU_v1 ID=rna-XM_014657558.2_VrVC1973A-SNU_v1; Name=rna-XM_014657558.2; organism=Vigna radiata; type=CDS; length=381bp; location=Sequence derived from: chr08:32192107..32193005+ (Vigna radiataback to top |