rna-XM_022782502.1
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Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_022782502.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9CA78|NMAT4_ARATH (Nuclear intron maturase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NMAT4 PE=3 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 4.102e-13 Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 0 Query: 39 PRSATYSPDNDHIVGKST----LAMDLASVLEEPKP----KPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
P+SA + DN + K T LA +LAS++EE KPR+RMELKR ELR++KRVKEQ NGKF DL+
Sbjct: 34 PKSALLATDNAEMASKETGMFSLAGELASLVEESSSHVDDDSKPRSRMELKRSLELRLKKRVKEQCINGKFSDLL 108
BLAST of rna-XM_022782502.1 vs. Araport11
Match: AT1G74350.1 (| Intron maturase%2C type II family protein | Chr1:27949022-27951283 REVERSE LENGTH=753 | 201606) HSP 1 Score: 60.8474 bits (146), Expect = 7.035e-12 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 0 Query: 53 GKSTLAMDLASVLEEPKP----KPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
G +LA +LAS++EE KPR+RMELKR ELR++KRVKEQ NGKF DL+
Sbjct: 7 GMFSLAGELASLVEESSSHVDDDSKPRSRMELKRSLELRLKKRVKEQCINGKFSDLL 63
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F2Q5|A0A3Q0F2Q5_VIGRR (nuclear intron maturase 4, mitochondrial-like OS=Vigna radiata var. radiata OX=3916 GN=LOC111241893 PE=4 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 9.478e-72 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT 106
MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT
Sbjct: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLMT 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F9Y5|A0A3Q0F9Y5_VIGRR (nuclear intron maturase 4, mitochondrial-like isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768254 PE=4 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 3.858e-62 Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVK+QH NGKFHDLM
Sbjct: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKQQHINGKFHDLM 105
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A1S3US16|A0A1S3US16_VIGRR (nuclear intron maturase 4, mitochondrial-like isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768254 PE=4 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 4.487e-62 Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVK+QH NGKFHDLM
Sbjct: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKQQHINGKFHDLM 105
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KY96|A0A4D6KY96_VIGUN (RNA-directed DNA polymerase OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1552 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 2.692e-43 Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVT ANSLKSL +LHFLRVTSS PL FKDKQQFE QP S T SPDNDHI GKSTLAMDLAS+LEEPKPKPKP++RMELKRFFELRI+KRVKE+H NGKFHDLM
Sbjct: 1 MRIVTTANSLKSLHNLHFLRVTSSLPLPFKDKQQFETQPHSPTCSPDNDHI-GKSTLAMDLASLLEEPKPKPKPKSRMELKRFFELRIKKRVKEKHANGKFHDLM 104
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|K7MLH5|K7MLH5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100784683 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.378e-39 Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPL--QFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVT AN KSL +L F+R+TSS PL +F DK E P ATYSPDN+H VGKSTLAMDLAS+LEEP KPKP++RME KRF ELRI+KRVKEQH NGKFHDLM
Sbjct: 1 MRIVTTANLFKSLHNLQFIRLTSSLPLLLKFSDKHHVETPPHGATYSPDNEH-VGKSTLAMDLASLLEEPPLKPKPKSRMEQKRFLELRIKKRVKEQHFNGKFHDLM 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|V7CDZ4|V7CDZ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G215300g PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.479e-39 Identity = 84/107 (78.50%), Postives = 91/107 (85.05%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEP--KPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MR+VT ANSLKSL SLHFLRVTSS PL FKDKQ FE P SAT SPDNDH VG+STLAMDLAS+LEE KPKPKP++RMELKRF ELRI+KRVKEQH NGKF DL+
Sbjct: 1 MRVVTAANSLKSLHSLHFLRVTSSLPLPFKDKQHFETPPHSATNSPDNDH-VGQSTLAMDLASLLEESKPKPKPKPKSRMELKRFLELRIKKRVKEQHANGKFQDLL 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445G6C5|A0A445G6C5_GLYSO (Nuclear intron maturase 4, mitochondrial isoform A OS=Glycine soja OX=3848 GN=D0Y65_045737 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.618e-39 Identity = 76/107 (71.03%), Postives = 85/107 (79.44%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPL--QFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MRIVT AN KSL +L F+R+TSS PL +F DK E P ATYSPDN+H VGKSTLAMDLAS+LEEP KPKP++RME KRF ELRI+KRVKEQH NGKFHDLM
Sbjct: 1 MRIVTTANLFKSLHNLQFIRLTSSLPLLLKFSDKHHVETPPHGATYSPDNEH-VGKSTLAMDLASLLEEPPLKPKPKSRMEQKRFLELRIKKRVKEQHFNGKFHDLM 106
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KUY9|A0A4D6KUY9_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1557 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 7.067e-28 Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 0 Query: 1 MRIVTVANSLKSLRSLHFLRVTSSAPLQFKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLE 66
MRIVT ANSLKSL SLHF RVTSS P FKDKQQFE QP S TYSPDN H VGKSTL M++AS+LE
Sbjct: 1 MRIVTAANSLKSLCSLHFFRVTSSLPFPFKDKQQFETQPHSVTYSPDNGHTVGKSTLVMNIASLLE 66
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0L9TQ86|A0A0L9TQ86_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g219700 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.111e-21 Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0 Query: 59 MDLASVLEEPKPKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
MDLAS+LEEPKPKPKPR+RMELKRFFELRI+KRVKEQHTNGKFHDLM
Sbjct: 1 MDLASLLEEPKPKPKPRSRMELKRFFELRIKKRVKEQHTNGKFHDLM 47
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Match: tr|A0A5B6YUB0|A0A5B6YUB0_DAVIN (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_004925 PE=4 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.019e-14 Identity = 51/108 (47.22%), Postives = 65/108 (60.19%), Query Frame = 0 Query: 4 VTVANSLKS--LRSLHFLRVTSSAPLQ--FKDKQQFEIQPRSATYSPDNDHIVGKSTLAMDLASVLEEPK--PKPKPRNRMELKRFFELRIEKRVKEQHTNGKFHDLM 105
V N LK LRS++ + V SS+ + F+ + S D+D VGK TLA +LAS++EE + KP+ RMELKR FELRI+KRVKEQ NGKF DLM
Sbjct: 9 VCKGNLLKCTILRSMNLVGVCSSSVIGIPFERLLGHSVYSTLEAISNDSDKDVGKITLAKNLASLVEESSNLDEKKPKTRMELKRSFELRIKKRVKEQFMNGKFQDLM 116 The following BLAST results are available for this feature:
BLAST of rna-XM_022782502.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 1 Position : 0 Zoom : x 1
BLAST of rna-XM_022782502.1 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 1 Position : 0 Zoom : x 1
BLAST of rna-XM_022782502.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=mRNA; length=321bpback to top protein sequence of rna-XM_022782502.1_VrVC1973A-SNU_v1 >rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=106bpback to top mRNA from alignment at chr06:33695297..33696658- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=mRNA; length=1362bp; location=Sequence derived from: chr06:33695297..33696658- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr06:33695297..33696658- >rna-XM_022782502.1_VrVC1973A-SNU_v1 ID=rna-XM_022782502.1_VrVC1973A-SNU_v1; Name=rna-XM_022782502.1; organism=Vigna radiata; type=CDS; length=321bp; location=Sequence derived from: chr06:33695297..33696658- (Vigna radiataback to top |