rna-XM_022782761.1
Transcript Overview
References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-XM_022782761.1 vs. Araport11
Match: AT3G50610.2 (| DNA-directed RNA polymerase II subunit RPB1-like protein | Chr3:18779723-18780454 REVERSE LENGTH=243 | 201606) HSP 1 Score: 56.6102 bits (135), Expect = 3.730e-10 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0 Query: 72 GDTNAFRPTTPGSSPGVGHRK-------FAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQN 140 G T+ F PT+PG+SPGVGH+K F + K + +++ +V+ HF G+ F PT+PGHSPGVGH + N Sbjct: 41 GFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKT-NVQDHFKTGSTDDFAPTSPGHSPGVGHKKGN 115 HSP 2 Score: 55.4546 bits (132), Expect = 9.951e-10 Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 0 Query: 72 GDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVA------VQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQI 142 G T+ F PT+PG+SPG+GH+K A K K A +Q + + HF G+ F PT PG+SPG+GH + + Sbjct: 145 GSTDDFAPTSPGNSPGIGHKKGHANVKGFKDDFAPTEEIRLQKMNGQDHFKTGSTDDFAPTTPGNSPGMGHKKGDDF 221
BLAST of rna-XM_022782761.1 vs. Araport11
Match: AT3G50610.1 (| DNA-directed RNA polymerase II subunit RPB1-like protein | Chr3:18779723-18780412 REVERSE LENGTH=229 | 201606) HSP 1 Score: 55.8398 bits (133), Expect = 6.597e-10 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0 Query: 72 GDTNAFRPTTPGSSPGVGHRK-------FAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQN 140 G T+ F PT+PG+SPGVGH+K F + K + +++ +V+ HF G+ F PT+PGHSPGVGH + N Sbjct: 27 GFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKT-NVQDHFKTGSTDDFAPTSPGHSPGVGHKKGN 101
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q0F7U2|A0A3Q0F7U2_VIGRR (precursor of CEP6-like OS=Vigna radiata var. radiata OX=3916 GN=LOC111241964 PE=3 SV=1) HSP 1 Score: 294.278 bits (752), Expect = 1.015e-100 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDTEELEFKASATIPTTSSLVISKHDVEGFGDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 144 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDTEELEFKASATIPTTSSLVISKHDVEGFGDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ Sbjct: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDTEELEFKASATIPTTSSLVISKHDVEGFGDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 144
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0S3R4V8|A0A0S3R4V8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G344700 PE=3 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 2.807e-83 Identity = 130/157 (82.80%), Postives = 135/157 (85.99%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDTEELE------FKASATIPTTSS-------LVISKHDVEGFGDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 144 MATFHAKP+CVVIFLALVAFNGSLV+HCRQIKPLN+HSSKK DT EL+ KASA IPTTSS VISK DVEG GDTNAFRPTTPGSSPGVGHRKFAAE KD+KATVAVQSPDVK HFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ Sbjct: 1 MATFHAKPKCVVIFLALVAFNGSLVSHCRQIKPLNQHSSKK-DTVELDNNPSPLLKASAIIPTTSSENKKVDSFVISKDDVEGLGDTNAFRPTTPGSSPGVGHRKFAAEGKDMKATVAVQSPDVKVHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 156
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|V7CCQ8|V7CCQ8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G245300g PE=3 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.395e-77 Identity = 119/157 (75.80%), Postives = 128/157 (81.53%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDTEELE------FKASATIPTTSS-------LVISKHDVEGFGDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 144 MA FHAKP+CV+IFLALVAFNGSL+ HCRQIKPLN+HSS KKDT LE KAS IPT SS I+KHDVE FGDTNAFRPTTPG+SPGVGHRKFA +DKD+KATVAV+SPDVK H TEGTESGFKPTNPGHSPGVGHAQ NQIGQ Sbjct: 1 MAIFHAKPKCVMIFLALVAFNGSLLTHCRQIKPLNQHSSLKKDTVVLENNPPPLLKASVNIPTPSSEKKKVDSFAIAKHDVENFGDTNAFRPTTPGNSPGVGHRKFATQDKDMKATVAVESPDVKVHVTEGTESGFKPTNPGHSPGVGHAQHNQIGQ 157
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A4D6KV89|A0A4D6KV89_VIGUN (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG2g1978 PE=3 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 1.402e-72 Identity = 109/144 (75.69%), Postives = 117/144 (81.25%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDTEELEFKASATIPTTSSLVISKHDVEGFGDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 144 MATF KP+CVVIFL L+AFNGSL+ HCR+IKPLN+H S KKDT S+ S VISK DVEGFGDTNAFRPTTPGSSPGVGHRKFA EDKD+KATV VQSPDV H TEGTESGFKPTNPGHSPGVGHAQ NQ+GQ Sbjct: 1 MATFDIKPKCVVIFLVLIAFNGSLLTHCREIKPLNQHYSLKKDTSANVPAPSSENKKVDSFVISKQDVEGFGDTNAFRPTTPGSSPGVGHRKFATEDKDMKATVEVQSPDVMVHVTEGTESGFKPTNPGHSPGVGHAQHNQMGQ 144
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151QW93|A0A151QW93_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_044436 PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 8.479e-57 Identity = 98/155 (63.23%), Postives = 110/155 (70.97%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDT---EELEFKASATIPTTSS-------LVISKHDVEGFGDTNAFRPTTPGSSPGVGHRKFAAEDKDVKA-TVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 144 MA F A + ++ LALVAFNGSL+ H RQIKPLN+HSS K T E F +PT SS V+ K VEGFGDTNAFRPTTPG+SPGVGHRKFA ED D+KA V V SPDVK H E TE+GFKPTNPGHSPGVGH+QQN+IGQ Sbjct: 1 MAIFQATRKFLISLLALVAFNGSLLTHGRQIKPLNQHSSLNKGTVVPENNPFPPHINVPTPSSEKKKVDSFVMPKQGVEGFGDTNAFRPTTPGNSPGVGHRKFAQEDNDMKAKVVVVHSPDVKVHVIEDTENGFKPTNPGHSPGVGHSQQNKIGQ 155
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|I1MVZ6|I1MVZ6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=106796786 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.766e-51 Identity = 102/165 (61.82%), Postives = 118/165 (71.52%), Query Frame = 0 Query: 1 MATF-HAKPRCVVIFLALVAFNGSLVAHCRQIKPLNK-HSSKKKDTEELEFKASATIPT----------TSSLVISKHDVEGFGD-----TNAFRPTTPGSSPGVGHRKFAAEDKDVKATVA-VQSPD-VKFHFTEGTES--GFKPTNPGHSPGVGHAQQNQIGQ 144 MA F +A +C+VIFL LVAFNGSL+ H RQIKPLN+ HSS DT + + +PT SS V+ K+ VE FGD TNAFRPTTPG+SPGVGHRKFA EDKDV+A VA VQSPD VK + TEGT++ GFKPTNPGHSPGVGHAQQN+IGQ Sbjct: 1 MAIFQYATRKCLVIFLLLVAFNGSLLTHGRQIKPLNQQHSSLNNDT--VVKHSVNNVPTHPSSGKKKVVDSSSVVPKYGVESFGDSMSSDTNAFRPTTPGNSPGVGHRKFAPEDKDVEAMVASVQSPDHVKVYVTEGTQNQDGFKPTNPGHSPGVGHAQQNKIGQ 163
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A0B2R3T3|A0A0B2R3T3_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_046160 PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.766e-51 Identity = 102/165 (61.82%), Postives = 118/165 (71.52%), Query Frame = 0 Query: 1 MATF-HAKPRCVVIFLALVAFNGSLVAHCRQIKPLNK-HSSKKKDTEELEFKASATIPT----------TSSLVISKHDVEGFGD-----TNAFRPTTPGSSPGVGHRKFAAEDKDVKATVA-VQSPD-VKFHFTEGTES--GFKPTNPGHSPGVGHAQQNQIGQ 144 MA F +A +C+VIFL LVAFNGSL+ H RQIKPLN+ HSS DT + + +PT SS V+ K+ VE FGD TNAFRPTTPG+SPGVGHRKFA EDKDV+A VA VQSPD VK + TEGT++ GFKPTNPGHSPGVGHAQQN+IGQ Sbjct: 1 MAIFQYATRKCLVIFLLLVAFNGSLLTHGRQIKPLNQQHSSLNNDT--VVKHSVNNVPTHPSSGKKKVVDSSSVVPKYGVESFGDSMSSDTNAFRPTTPGNSPGVGHRKFAPEDKDVEAMVASVQSPDHVKVYVTEGTQNQDGFKPTNPGHSPGVGHAQQNKIGQ 163
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371GLA6|A0A371GLA6_MUCPR (Precursor of CEP9 (Fragment) OS=Mucuna pruriens OX=157652 GN=CEP9 PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 3.048e-45 Identity = 87/153 (56.86%), Postives = 101/153 (66.01%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKKDTEELE-FKASATIPTTSS-------LVISKHDVEGFGD----TNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQ 141 MA F A + +VIFLALVAFNGSL+AH RQIKPLNK + + S +PT SS + K VE FGD TNAFRPTTPG+SPGVGHRKFA +DKD + VAVQSPDVK + TEGT +G + TNPGHSPGVGH + Q Sbjct: 1 MAIFQATRKYLVIFLALVAFNGSLLAHGRQIKPLNKDTHVVVENNPFHPLTHSVDVPTPSSEKKIFGSSAMPKQGVETFGDSGGDTNAFRPTTPGNSPGVGHRKFAQQDKDTETKVAVQSPDVKVYVTEGTTNGLQGTNPGHSPGVGHGKLAQ 153
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A371EL30|A0A371EL30_MUCPR (Precursor of CEP9 (Fragment) OS=Mucuna pruriens OX=157652 GN=CEP9 PE=3 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.537e-41 Identity = 86/161 (53.42%), Postives = 104/161 (64.60%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKK-----DTEELEFKASAT-IPTTSS------LVISKHDVEGFGD-----TNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQIGQ 144 M F + +FLALVA + SL+ H ++IKPLN+HSS K + KAS +P +SS V K+ V FG TN FRPT PG+SPGVGHRKFA +DKD+KA VAVQ+PDVK + TEG + FKPTNPGHSPGVGHAQQN+IGQ Sbjct: 234 MGKFQDMNKYFAVFLALVACHDSLLTHGKEIKPLNQHSSLNKGIVVPEDNPQPLKASVNNVPISSSENKDDSTVTPKNGVASFGYSGAAYTNVFRPTPPGNSPGVGHRKFAQQDKDMKAKVAVQNPDVKVYVTEGKTNAFKPTNPGHSPGVGHAQQNKIGQ 394 HSP 2 Score: 134.42 bits (337), Expect = 6.814e-35 Identity = 79/153 (51.63%), Postives = 96/153 (62.75%), Query Frame = 0 Query: 1 MATFHAKPRCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKK-----DTEELEFKASAT-IPTTSS------LVISKHDVEGF-----GDTNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGH 136 MA F + +FLALVA + SL+ H R+IKP +HSS+ K D KAS +P +SS V K+ V F TNAFRPT PG+SPGVGH KFA ED+++KA VAVQSPDVK + T+GT + FKPTNPGHSPGVGH Sbjct: 38 MAKFQDMNKYFAVFLALVACHYSLLTHSREIKPFTQHSSQNKGTVMPDDSPQPLKASVNNVPISSSEKKDDSTVTPKNGVASFEYSGAAYTNAFRPTKPGNSPGVGHPKFAQEDENMKAKVAVQSPDVKVYETQGTTNAFKPTNPGHSPGVGH 190
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SXQ7|A0A151SXQ7_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_014979 PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 8.706e-40 Identity = 78/145 (53.79%), Postives = 95/145 (65.52%), Query Frame = 0 Query: 9 RCVVIFLALVAFNGSLVAHCRQIKPLNKHSSKKK------DTEELEFKASATIPTTSSLVISKHDVEGFGD-----TNAFRPTTPGSSPGVGHRKFAAEDKDVKATVAVQSPDVKFHFTEGTESGFKPTNPGHSPGVGHAQQNQI 142 + +FLALVA + SL+ H R+IKP + K T LE K S+V SK+ FG+ TN FRPTTPG+SPGVGHRKFA EDKD+KA V V SPDVK + TEGT++GFKPT+PGHSPGVGHAQQN++ Sbjct: 3 KYFAVFLALVACHDSLLTHGREIKPFTRIPQPLKAIVNNDPTPSLEKK-------DESIVTSKYGFASFGNSGVAYTNGFRPTTPGNSPGVGHRKFAEEDKDMKAKVVVNSPDVKVYVTEGTKNGFKPTDPGHSPGVGHAQQNKL 140 The following BLAST results are available for this feature:
BLAST of rna-XM_022782761.1 vs.
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt Swissprot) Total hits: 0
BLAST of rna-XM_022782761.1 vs. Araport11
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs arabidopsis Araport11) Total hits: 2
BLAST of rna-XM_022782761.1 vs. UniProtKB/TrEMBL
Analysis Date: 2023-06-20 (Blastp of Vigna radiata cv. VC1973A proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for Vigna radiata cv. VC1973A genome v1.0
Date Performed: 2023-06-20
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-XM_022782761.1_VrVC1973A-SNU_v1 ID=rna-XM_022782761.1_VrVC1973A-SNU_v1; Name=rna-XM_022782761.1; organism=Vigna radiata; type=mRNA; length=435bpback to top protein sequence of rna-XM_022782761.1_VrVC1973A-SNU_v1 >rna-XM_022782761.1_VrVC1973A-SNU_v1 ID=rna-XM_022782761.1_VrVC1973A-SNU_v1; Name=rna-XM_022782761.1_VrVC1973A-SNU_v1; organism=Vigna radiata; type=polypeptide; length=144bpback to top mRNA from alignment at chr07:27328871..27329438- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>rna-XM_022782761.1_VrVC1973A-SNU_v1 ID=rna-XM_022782761.1_VrVC1973A-SNU_v1; Name=rna-XM_022782761.1; organism=Vigna radiata; type=mRNA; length=568bp; location=Sequence derived from: chr07:27328871..27329438- (Vigna radiataback to top Coding sequence (CDS) from alignment at chr07:27328871..27329438- >rna-XM_022782761.1_VrVC1973A-SNU_v1 ID=rna-XM_022782761.1_VrVC1973A-SNU_v1; Name=rna-XM_022782761.1; organism=Vigna radiata; type=CDS; length=435bp; location=Sequence derived from: chr07:27328871..27329438- (Vigna radiataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|