rna-XM_027332903.1

Transcript Overview
Namerna-XM_027332903.1
Unique Namerna-XM_027332903.1_CaCDCfrontier-NCBI_v1
TypemRNA
OrganismCicer arietinum (chickpea)
Sequence length465
Productuncharacterized mitochondrial protein AtMg00810-like
References
External references for this mRNA
DatabaseAccession
GeneID113785822
GenBankXM_027332903.1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr3chromosomechr3:25259379..25259843 +Cicer arietinum CDC Frontier NCBI RefSeq v1n/a
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-LOC113785822gene-LOC113785822_CaCDCfrontier-NCBI_v1Cicer arietinumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-XM_027332903.1-1exon-XM_027332903.1-1_CaCDCfrontier-NCBI_v1Cicer arietinumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds-XP_027188704.1cds-XP_027188704.1_CaCDCfrontier-NCBI_v1Cicer arietinumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-XM_027332903.1_CaCDCfrontier-NCBI_v1rna-XM_027332903.1_CaCDCfrontier-NCBI_v1Cicer arietinumpolypeptide
rna-XM_027332903.1_CaCDCfrontier-NCBI_v1rna-XM_027332903.1_CaCDCfrontier-NCBI_v1-proteinCicer arietinumpolypeptide


Homology
[Close]
BLAST of rna-XM_027332903.1 vs. Araport11
Match: | (Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | chr4:12129485-12133157 FORWARD LENGTH=1043)

HSP 1 Score: 154.066 bits (388), Expect = 8.304e-44
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLL 151
            MDP+V  SA  G    D   YRRL+GRLMYL I+  DISF V+KL+Q+ +  R  H  ++  +L Y+K   GQ L + S   + L  ++DA++ SC DTRRST  +C+FLG +L+SWK+K+Q  +SKSSAEAEYR LS A  E++WL +  
Sbjct:  358 MDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFF 508
[Close]
BLAST of rna-XM_027332903.1 vs. Araport11
Match: | (Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | chr4:12129485-12133157 FORWARD LENGTH=1043)

HSP 1 Score: 154.066 bits (388), Expect = 8.304e-44
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLL 151
            MDP+V  SA  G    D   YRRL+GRLMYL I+  DISF V+KL+Q+ +  R  H  ++  +L Y+K   GQ L + S   + L  ++DA++ SC DTRRST  +C+FLG +L+SWK+K+Q  +SKSSAEAEYR LS A  E++WL +  
Sbjct:  358 MDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFF 508
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.716e-31
Identity = 57/154 (37.01%), Postives = 93/154 (60.39%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            M P+ K+S   GT ++DP+ YR +VG L YL  +  DIS+ V++L+Q+M      HL ++  +L+YL   P   +     N+L+L AY+DA+W    D   ST  + ++LG   +SW +K+Q  + +SS EAEYR +++ +SE+ W+  LL + 
Sbjct: 1225 MAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTEL 1378
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|P92519|M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.675e-30
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 0 
Query:   17 DPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVW 146
            DPS +R +VG L YLT++  DIS+ V+ + Q M +        +  +L+Y+K      L     + L + A+ D++W  C  TRRSTT FC FLG  ++SW AK+QPT+S+SS E EYR L+  A+E+ W
Sbjct:   96 DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.764e-28
Identity = 53/149 (35.57%), Postives = 88/149 (59.06%), Query Frame = 0 
Query:    6 KISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            K++   GT + DP+ YR +VG L YL  +  D+S+ V++L+QYM      H  ++  +L+YL   P   +     N+L+L AY+DA+W    D   ST  + ++LG   +SW +K+Q  + +SS EAEYR +++ +SE+ W+  LL + 
Sbjct: 1213 KLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTEL 1361
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|P0CV72|RL161_PLAVT (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.209e-19
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0 
Query:   21 YRRLVGRLMYLTISHR-DISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWL 147
            Y   VG +MYL +  R D++  V  L+Q+       H  ++  +L+YL+      L F    +  L  Y+DA+W   V++RRST+ +   L    VSW++K+Q T++ SS E EY  LS A  E VWL
Sbjct:    6 YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|P93290|M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.349e-19
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 0 
Query:   29 MYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFC 107
            MYLTI+  D++F V++L+Q+   +R   + +++ +L Y+K   GQ L + +T+ L L A+AD++W SC DTRRS T FC
Sbjct:    1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.017e-16
Identity = 39/135 (28.89%), Postives = 72/135 (53.33%), Query Frame = 0 
Query:   21 YRRLVGRLMYLTISHR-DISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            Y   VG LMY  +  R DI+  V  ++++++   + H  ++  +L+YL+   G  L F  ++ + L  Y DA+    +D R+S+T +        +SW++K Q  ++ S+ EAEY   +    E++WL+R L + 
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI-LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL 1244
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.164e-14
Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 0 
Query:   22 RRLVGRLMYLTISHR-DISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSL--ALSAYADANWGSCVDTRRSTTDFCLFLGD-ALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLL 151
            R L+G LMY+ +  R D++  V+ L++Y  +       ++  +L+YLK     +L+F    +    +  Y D++W      R+STT +   + D  L+ W  K+Q +++ SS EAEY  L  A  E +WL+ LL
Sbjct: 1182 RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLL 1315
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Match: sp|P25600|YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 8.304e-12
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 0 
Query:   15 ISDPSLYRRLVGRLMYLTISHR-DISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQ-QPTISKSSAEAEYRELSSAASEV 144
            + D + Y+ +VG+L++   + R DIS+ V  L++++++ R  HL S   +L+YL       L + S + LAL+ Y DA+ G+  D   ST  +   L  A V+W +K+ +  I   S EAEY   S    E+
Sbjct:  177 LKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVMEI 308
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A3Q7X4T1|A0A3Q7X4T1_CICAR (Uncharacterized protein LOC113785822 OS=Cicer arietinum OX=3827 GN=LOC113785822 PE=4 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 2.894e-110
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF
Sbjct:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SQ31|A0A151SQ31_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_003098 PE=4 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.577e-65
Identity = 98/154 (63.64%), Postives = 125/154 (81.17%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            MDPN+K++  DG  + DPS+YRRL+GRLMYLTIS  DI+F VHKL+QYMQ+    HL ++HHLLQYLK  PGQ L FP+ N+L  SAYADA+WGSC+DTR+ST  FC+FLG+AL+SWK+ +Q T+SKSS+++EYR LSS ASE+VWL+ LL  F
Sbjct:  252 MDPNLKLTLHDGKTLLDPSMYRRLIGRLMYLTISRPDITFAVHKLSQYMQKPMTTHLNAVHHLLQYLKSNPGQGLFFPAANTLHFSAYADADWGSCLDTRKSTIGFCVFLGNALLSWKSVKQGTVSKSSSKSEYRALSSVASEIVWLKCLLTHF 405
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A445J2J5|A0A445J2J5_GLYSO (Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 GN=D0Y65_024546 PE=4 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 7.703e-65
Identity = 100/154 (64.94%), Postives = 124/154 (80.52%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            MDPN+K++   G  + DPS+YR L+G LMYLTIS  DI+FVV+KL+QYMQ  R PHL  +HHLLQY+K A GQ L FP++NS  LSAYADA+WG C+DTRRST+  C+FLGDAL+SWK+K Q  +SKSSAEAEYR LSS ++EV+WLRRLL+ F
Sbjct:    1 MDPNLKLNMLSGDLLPDPSMYRCLLGCLMYLTISRSDITFVVNKLSQYMQHPRIPHLDVVHHLLQYIKGALGQSLHFPASNSFNLSAYADADWGGCLDTRRSTSGSCVFLGDALISWKSKNQTAVSKSSAEAEYRALSSVSNEVIWLRRLLLPF 154
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A392NRA6|A0A392NRA6_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.349e-62
Identity = 89/154 (57.79%), Postives = 123/154 (79.87%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            MDP   ++ TDG  ++D S YRRL+GRLMYLTIS  DI++ V+KL+Q+MQ    PHL ++HH+LQYLK  PG+ L FP+ +SL L+A+ADA+WGSC  TR+STT FC+FL D+L+SWK+K+QPT+++SSAEAEYR L+S  SE++W+++LL  F
Sbjct:   87 MDPGNSLNDTDGEALTDISSYRRLIGRLMYLTISRPDITYAVNKLSQFMQHPHTPHLAAVHHVLQYLKGTPGKGLFFPTQSSLRLTAFADADWGSCKVTRKSTTGFCVFLDDSLISWKSKKQPTVARSSAEAEYRALASLTSELLWIKQLLRTF 240
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1DSZ9|A0A6J1DSZ9_MOMCH (Uncharacterized protein LOC111022877 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022877 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 8.898e-61
Identity = 90/151 (59.60%), Postives = 117/151 (77.48%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLL 151
            MDPN+K+SA+DG  + DPS+YRRL+GRL+YLTIS  DI+F VHKL+Q+M      HL ++H L++YLK  PGQ +L   T S  L A+ADA+WGSC D+R+STT FC+FLGD+LVSWKAK+Q TI +SS EAEYR L++  SE+VW+  LL
Sbjct:  157 MDPNIKLSASDGKLLDDPSVYRRLIGRLLYLTISRPDITFTVHKLSQFMAAPHTTHLAAVHSLIRYLKGCPGQEILLNPTKSFQLRAFADADWGSCFDSRKSTTGFCIFLGDSLVSWKAKKQSTIFRSSTEAEYRALAATVSEIVWISHLL 307
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151SS25|A0A151SS25_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_003891 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 9.679e-61
Identity = 88/154 (57.14%), Postives = 120/154 (77.92%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            MDPN   ++TDG P+ DPS YRRL+GRLMY++IS  D+ F V+KL+Q+M   R PHL  +H +L+YLK  PGQ + F S +   LSAY DA+WGSCVD+RRSTT FC+F+GD+L++WK+K+Q T+S+SSAEAEYR ++S  SE++WL++LL  F
Sbjct:  147 MDPNQHFNSTDGEPLQDPSAYRRLLGRLMYISISRPDVCFAVNKLSQFMSHPRTPHLQVVHQVLRYLKATPGQGIFFSSQSKFTLSAYVDADWGSCVDSRRSTTGFCIFMGDSLLTWKSKKQATVSRSSAEAEYRAIASITSELLWLKQLLRFF 300
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A2P5FNK4|A0A2P5FNK4_TREOI (Ribonuclease H-like domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_049120 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.524e-60
Identity = 89/154 (57.79%), Postives = 121/154 (78.57%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            MDP +K+S T+G  + D S YR  +GRL+YLT+SH DI+F VHKL+Q++ + R PHL + HHLL+YLK+ PGQ L F +++SL + A++DA+WGSC DTR+S T FC+FLGD+LVSWKAK+Q TIS+SSAEAEYR L++  SE++ L+ LL  F
Sbjct:    1 MDPKLKLSTTEGDLLPDASAYRCFIGRLLYLTLSHPDITFAVHKLSQFLSRPRLPHLKAAHHLLRYLKHRPGQGLFFSASSSLQVKAFSDADWGSCPDTRKSVTGFCIFLGDSLVSWKAKKQSTISRSSAEAEYRALAATTSEILCLQNLLHDF 154
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A6J1DNK9|A0A6J1DNK9_MOMCH (Uncharacterized protein LOC111022877 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022877 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.709e-60
Identity = 90/151 (59.60%), Postives = 117/151 (77.48%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLL 151
            MDPN+K+SA+DG  + DPS+YRRL+GRL+YLTIS  DI+F VHKL+Q+M      HL ++H L++YLK  PGQ +L   T S  L A+ADA+WGSC D+R+STT FC+FLGD+LVSWKAK+Q TI +SS EAEYR L++  SE+VW+  LL
Sbjct:  157 MDPNIKLSASDGKLLDDPSVYRRLIGRLLYLTISRPDITFTVHKLSQFMAAPHTTHLAAVHSLIRYLKGCPGQEILLNPTKSFQLRAFADADWGSCFDSRKSTTGFCIFLGDSLVSWKAKKQSTIFRSSTEAEYRALAATVSEIVWISHLL 307
[Close]
BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A803NGJ9|A0A803NGJ9_CANSA (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.134e-59
Identity = 87/154 (56.49%), Postives = 120/154 (77.92%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRLLVQF 154
            MDP +K+    G  ++DPS YR+LVG+L+YLT+S  DI+FVV+ L+Q+M   R PHL ++HHLL+YLK +PGQ LL+ +++SL L  ++D++W SC  TRRSTT FC+FLGD+L+SWK K+QPTIS+SSAEAEYR L++  SE+ WL+ LL  F
Sbjct:    1 MDPRLKLDDQQGEALADPSPYRQLVGKLLYLTLSRPDITFVVNILSQFMSSPRTPHLQAVHHLLRYLKGSPGQGLLYSTSSSLQLHGFSDSDWASCPTTRRSTTGFCIFLGDSLISWKTKKQPTISRSSAEAEYRALAATGSEITWLQYLLQDF 154
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BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Match: tr|A0A151T088|A0A151T088_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_022855 PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.595e-59
Identity = 85/131 (64.89%), Postives = 108/131 (82.44%), Query Frame = 0 
Query:    1 MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQQTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTRRSTTDFCLFLGDALVSWKAKQQPTISKSSAE 131
            MDPN+K++  DG P+S+PS+Y+RL+GRLMYLTIS  DI+F +HKL+QYMQ+    HL  +HHLLQY K  PGQ L FP+ N+L LSAY DA+WGSC+DTR+STT FC+FLG+AL+SWK+ +Q TISKSSAE
Sbjct:   11 MDPNMKLTLHDGEPLSNPSMYKRLIGRLMYLTISRSDITFAIHKLSQYMQKPMTTHLNVVHHLLQYSKSNPGQGLFFPAANNLHLSAYVDADWGSCLDTRKSTTGFCVFLGNALLSWKSVKQGTISKSSAE 141
The following BLAST results are available for this feature:
BLAST of rna-XM_027332903.1 vs. Araport11
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs arabidopsis Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
|8.304e-4448.34Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p... [more]
|8.304e-4448.34Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p... [more]
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BLAST of rna-XM_027332903.1 vs. UniProtKB/Swiss-Prot
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt Swissprot)
Total hits: 8
Match NameE-valueIdentityDescription
sp|Q94HW2|POLR1_ARATH3.716e-3137.01Retrovirus-related Pol polyprotein from transposon... [more]
sp|P92519|M810_ARATH1.675e-3041.54Uncharacterized mitochondrial protein AtMg00810 OS... [more]
sp|Q9ZT94|POLR2_ARATH3.764e-2835.57Retrovirus-related Pol polyprotein from transposon... [more]
sp|P0CV72|RL161_PLAVT1.209e-1935.94Secreted RxLR effector protein 161 OS=Plasmopara v... [more]
sp|P93290|M240_ARATH5.349e-1943.04Uncharacterized mitochondrial protein AtMg00240 OS... [more]
sp|P10978|POLX_TOBAC6.017e-1628.89Retrovirus-related Pol polyprotein from transposon... [more]
sp|P04146|COPIA_DROME7.164e-1431.34Copia protein OS=Drosophila melanogaster OX=7227 G... [more]
sp|P25600|YCH4_YEAST8.304e-1232.58Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
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BLAST of rna-XM_027332903.1 vs. UniProtKB/TrEMBL
Analysis Date: 2024-01-25 (Blastp of Cicer arietinum cv. CDC Frontier NCBI proteins vs UniProt TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
tr|A0A3Q7X4T1|A0A3Q7X4T1_CICAR2.894e-110100.00Uncharacterized protein LOC113785822 OS=Cicer arie... [more]
tr|A0A151SQ31|A0A151SQ31_CAJCA2.577e-6563.64Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A445J2J5|A0A445J2J5_GLYSO7.703e-6564.94Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A392NRA6|A0A392NRA6_9FABA6.349e-6257.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
tr|A0A6J1DSZ9|A0A6J1DSZ9_MOMCH8.898e-6159.60Uncharacterized protein LOC111022877 isoform X2 OS... [more]
tr|A0A151SS25|A0A151SS25_CAJCA9.679e-6157.14Retrovirus-related Pol polyprotein from transposon... [more]
tr|A0A2P5FNK4|A0A2P5FNK4_TREOI2.524e-6057.79Ribonuclease H-like domain containing protein OS=T... [more]
tr|A0A6J1DNK9|A0A6J1DNK9_MOMCH2.709e-6059.60Uncharacterized protein LOC111022877 isoform X1 OS... [more]
tr|A0A803NGJ9|A0A803NGJ9_CANSA3.134e-5956.49Uncharacterized protein OS=Cannabis sativa OX=3483... [more]
tr|A0A151T088|A0A151T088_CAJCA3.595e-5964.89Retrovirus-related Pol polyprotein from transposon... [more]
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InterPro
Analysis Name: InterProScan Analysis for Cicer arietinum CDC Frontier NCBI RefSeq v1
Date Performed: 2024-01-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..151
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 87..151
e-value: 8.23378E-34
score: 114.102

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-XM_027332903.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332903.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332903.1; organism=Cicer arietinum; type=mRNA; length=465bp
ATGGATCCCAATGTTAAAATTTCAGCCACTGACGGTACTCCTATTTCTGA
TCCATCACTTTATCGACGACTCGTTGGCAGACTCATGTACTTGACTATAT
CGCACCGTGATATTAGCTTTGTTGTTCATAAACTCAACCAATATATGCAA
CAGACACGACGACCTCATCTCCTTTCTATTCACCATCTTTTGCAATACCT
TAAATATGCACCAGGCCAACGTCTCTTGTTTCCTTCAACTAATTCTCTTG
CACTTTCAGCTTATGCTGATGCTAATTGGGGCAGCTGTGTGGATACTAGA
AGATCAACTACTGATTTTTGCCTCTTCCTTGGTGACGCTTTAGTTTCTTG
GAAGGCAAAACAACAACCTACAATCTCTAAATCTTCTGCTGAAGCTGAGT
ATAGGGAACTGTCCTCAGCTGCTAGTGAAGTTGTTTGGTTGCGACGTTTA
CTTGTTCAATTTTAA
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protein sequence of rna-XM_027332903.1_CaCDCfrontier-NCBI_v1

>rna-XM_027332903.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332903.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332903.1_CaCDCfrontier-NCBI_v1; organism=Cicer arietinum; type=polypeptide; length=154bp
MDPNVKISATDGTPISDPSLYRRLVGRLMYLTISHRDISFVVHKLNQYMQ
QTRRPHLLSIHHLLQYLKYAPGQRLLFPSTNSLALSAYADANWGSCVDTR
RSTTDFCLFLGDALVSWKAKQQPTISKSSAEAEYRELSSAASEVVWLRRL
LVQF
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mRNA from alignment at chr3:25259379..25259843+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-XM_027332903.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332903.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332903.1; organism=Cicer arietinum; type=mRNA; length=465bp; location=Sequence derived from: chr3:25259379..25259843+ (Cicer arietinum
ATGGATCCCAATGTTAAAATTTCAGCCACTGACGGTACTCCTATTTCTGA
TCCATCACTTTATCGACGACTCGTTGGCAGACTCATGTACTTGACTATAT
CGCACCGTGATATTAGCTTTGTTGTTCATAAACTCAACCAATATATGCAA
CAGACACGACGACCTCATCTCCTTTCTATTCACCATCTTTTGCAATACCT
TAAATATGCACCAGGCCAACGTCTCTTGTTTCCTTCAACTAATTCTCTTG
CACTTTCAGCTTATGCTGATGCTAATTGGGGCAGCTGTGTGGATACTAGA
AGATCAACTACTGATTTTTGCCTCTTCCTTGGTGACGCTTTAGTTTCTTG
GAAGGCAAAACAACAACCTACAATCTCTAAATCTTCTGCTGAAGCTGAGT
ATAGGGAACTGTCCTCAGCTGCTAGTGAAGTTGTTTGGTTGCGACGTTTA
CTTGTTCAATTTTAA
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Coding sequence (CDS) from alignment at chr3:25259379..25259843+

>rna-XM_027332903.1_CaCDCfrontier-NCBI_v1 ID=rna-XM_027332903.1_CaCDCfrontier-NCBI_v1; Name=rna-XM_027332903.1; organism=Cicer arietinum; type=CDS; length=465bp; location=Sequence derived from: chr3:25259379..25259843+ (Cicer arietinum
ATGGATCCCAATGTTAAAATTTCAGCCACTGACGGTACTCCTATTTCTGA
TCCATCACTTTATCGACGACTCGTTGGCAGACTCATGTACTTGACTATAT
CGCACCGTGATATTAGCTTTGTTGTTCATAAACTCAACCAATATATGCAA
CAGACACGACGACCTCATCTCCTTTCTATTCACCATCTTTTGCAATACCT
TAAATATGCACCAGGCCAACGTCTCTTGTTTCCTTCAACTAATTCTCTTG
CACTTTCAGCTTATGCTGATGCTAATTGGGGCAGCTGTGTGGATACTAGA
AGATCAACTACTGATTTTTGCCTCTTCCTTGGTGACGCTTTAGTTTCTTG
GAAGGCAAAACAACAACCTACAATCTCTAAATCTTCTGCTGAAGCTGAGT
ATAGGGAACTGTCCTCAGCTGCTAGTGAAGTTGTTTGGTTGCGACGTTTA
CTTGTTCAATTTTAA
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