Psat1g041880.1

Transcript Overview
NamePsat1g041880.1
Unique NamePsat1g041880.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length907
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr1LG6supercontigchr1LG6:64777334..64778240 +Pisum sativum Cameor genome v1an/a
chr1LG6supercontigchr1LG6:64777334..64778240 +Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuR007Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR012Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR051Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR054Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR007Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR029Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pszwsR001Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR032Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR089Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR056Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR072Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR100Vicia faba cv. Tiffany genome v1.0Vicia faba
psvrvR023Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR029Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvssR042Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR018Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR050Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR046Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR108Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvumR001Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR026Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR035Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR103Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR049Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR103Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR122Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR001Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR021Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR001Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR008Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR031Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR023Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR034Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR095Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR101Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR116Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR009Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR011Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pspvfR029Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
psvunR050Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR043Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pspvfR078Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat1g041880Psat1g041880_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat1g041880.1Psat1g041880.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat1g041880.1_Ps_Cameor_v1aPsat1g041880.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat1g041880.1.five_prime_utr1Psat1g041880.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat1g041880.1.exon1Psat1g041880.1.exon1_Ps_Cameor_v1aPisum sativumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat1g041880.1.cds1Psat1g041880.1.cds1_Ps_Cameor_v1aPisum sativumCDS


Homology
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum OX=4113 GN=FDH1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.843e-31
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCYQIQRD 198
            MRILILVRNF+P +HQ I GEW+VA IAHRAYDLEGKT+GTVGAGRIG+LLLQRLKPFNC  +  D
Sbjct:  159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 224
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-30
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCYQIQRD 198
            MRIL+L+RNF+P +HQ + GEW+VAGIAHR YDLEGKT+GTVGAGRIG+LLLQRLKPFNC  +  D
Sbjct:  156 MRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMYHD 221
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH_ARATH (Formate dehydrogenase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FDH1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.322e-30
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCYQIQRD 198
            MRILIL+RNFVP Y+Q + GEW+VAGIA+RAYDLEGKTIGTVGAGRIGKLLLQRLKPF C  +  D
Sbjct:  162 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHD 227
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.403e-30
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCYQIQRD 198
            MRILIL+RNF+P Y Q + GEW+VAGIAHRAYDLEGKT+GTVGAGR G+LLLQRLKPFNC  +  D
Sbjct:  155 MRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHD 220
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.549e-29
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCYQIQRD 198
            MRILIL+RNF+P Y Q + GEW+VAGIA+RAYDLEGKT+GTVGAGRIG+LLLQRLKPFNC  +  D
Sbjct:  154 MRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 219
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH_EMENI (Formate dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=aciA PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.946e-19
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCYQI 189
            M IL+LVRNFVP++ Q   G+W+VA +A   +DLE K +GTVG GRIG+ +L+RLKPF+C ++
Sbjct:  130 MTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDCKEL 192
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH_CANBO (Formate dehydrogenase OS=Candida boidinii OX=5477 GN=FDH1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.701e-19
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNCYQI 189
            M +L+LVRNFVP++ Q I  +W+VA IA  AYD+EGKTI T+GAGRIG  +L+RL PFN  ++
Sbjct:  129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNPKEL 191
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta OX=870730 GN=FMDH PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.175e-16
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFN 177
            M +L+LVRNFVP++ Q I+G W+VA IA  ++D+EGK I T+GAGRIG  +L+RL  FN
Sbjct:  129 MTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFN 187
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FDH1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.918e-16
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    7 ILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFN 177
            IL+L+RN+   + Q+I GEWD+AG+A   YDLE K I TVGAGRIG  +L+RL  FN
Sbjct:  133 ILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFN 189
[Close]
BLAST of Psat1g041880.1 vs. DB:Swiss
Match: FDH1_YEASC (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae (strain CEN.PK113-7D) OX=889517 GN=FDH1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.918e-16
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    7 ILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFN 177
            IL+L+RN+   + Q+I GEWD+AG+A   YDLE K I TVGAGRIG  +L+RL  FN
Sbjct:  133 ILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFN 189
The following BLAST results are available for this feature:
BLAST of Psat1g041880.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
FDH_SOLTU2.843e-3178.79Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH2_ORYSJ5.206e-3074.24Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_ARATH7.322e-3078.79Formate dehydrogenase, chloroplastic/mitochondrial... [more]
FDH_HORVU7.403e-3075.76Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH1_ORYSJ1.549e-2975.76Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH_EMENI1.946e-1955.56Formate dehydrogenase OS=Emericella nidulans (stra... [more]
FDH_CANBO2.701e-1958.73Formate dehydrogenase OS=Candida boidinii OX=5477 ... [more]
FDH_PICAN1.175e-1657.63Formate dehydrogenase OS=Pichia angusta OX=870730 ... [more]
FDH1_YEAST5.918e-1657.89Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]
FDH1_YEASC5.918e-1657.89Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.720coord: 1..63
e-value: 9.6E-27
score: 95.8
IPR006140D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domainPFAMPF028262-Hacid_dh_Ccoord: 3..61
e-value: 1.1E-9
score: 37.9
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 2..60

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat1g041880.1_Ps_Cameor_v1a ID=Psat1g041880.1_Ps_Cameor_v1a; Name=Psat1g041880.1; organism=Pisum sativum; type=mRNA; length=907bp
TGAAATATTGGATTTGTTCAACTATAATAATTTAAAGAGAATGTGTTTTT
TTGAATACACATTCAAAGTCAAACAACATGTAAACTGCACTGAGATTATT
ATGTTTATGTAGAGCTGTCAAATAAGCCCTATATTTAAAAGCCTCAATTA
TTAAGCCCTATTAAAGCCCCAATATATTAAGCCCCTTATCATTGAGATTT
ATTTTAGGCCCTAAAATTTTAGGCCCTTTATATAATGCATTTTTTTAGGC
CCCATTGAGGGGCCTTATTTTATTCCTAAAATTTGGACTTGAGTTTATCA
CTCCATTCATGTTCTATGCAAAGCTTCCGCCACCGTCAACCAATTACACC
GCCGTCGACTTTTCTCTATCACAGAAATAAAGGTACTCTTCTATCTCCAT
TTCTTTAATCTCTAGTTTTCTTATATCAAATTTCATTTTTTATCTCATTT
GAATCAACATGTTTATAATACTGTTTAATATGTACACTCACACCAAGCTG
TTTGTGGAAATGCCTCAACAACTTTATACATGATATATAATCTTTGATTA
AAAGTTTCGATGATTAATTTGCCGTGTTTTAATCTTAGTGGTACTTTGAG
TCATTCTGTTGCAAATTTAGGTTCTTTAGTTGATTTAGTTGATATCAGAT
TGGAGGGTAGTGCCTAGTAATTGGACACAGTATTTGTTGTTGAGGATGAG
CTCATGAGAATTCTCATTCTGGTGAGGAATTTTGTGCCTAGTTACCATCA
GTCTATTACAGGAGAATGGGATGTTGCTGGCATTGCACATAGAGCCTATG
ATCTTGAAGGAAAGACGATAGGAACGGTGGGTGCTGGACGAATCGGGAAG
CTTTTACTCCAAAGGCTGAAACCTTTTAACTGTTACCAGATACAGAGAGA
TGGTTAG
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protein sequence of Psat1g041880.1_Ps_Cameor_v1a

>Psat1g041880.1_Ps_Cameor_v1a ID=Psat1g041880.1_Ps_Cameor_v1a; Name=Psat1g041880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=68bp
MRILILVRNFVPSYHQSITGEWDVAGIAHRAYDLEGKTIGTVGAGRIGKL
LLQRLKPFNCYQIQRDG*
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mRNA from alignment at chr1LG6:64777334..64778240+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat1g041880.1_Ps_Cameor_v1a ID=Psat1g041880.1_Ps_Cameor_v1a; Name=Psat1g041880.1; organism=Pisum sativum; type=mRNA; length=907bp; location=Sequence derived from: chr1LG6:64777334..64778240+ (Pisum sativum
TGAAATATTGGATTTGTTCAACTATAATAATTTAAAGAGAATGTGTTTTT
TTGAATACACATTCAAAGTCAAACAACATGTAAACTGCACTGAGATTATT
ATGTTTATGTAGAGCTGTCAAATAAGCCCTATATTTAAAAGCCTCAATTA
TTAAGCCCTATTAAAGCCCCAATATATTAAGCCCCTTATCATTGAGATTT
ATTTTAGGCCCTAAAATTTTAGGCCCTTTATATAATGCATTTTTTTAGGC
CCCATTGAGGGGCCTTATTTTATTCCTAAAATTTGGACTTGAGTTTATCA
CTCCATTCATGTTCTATGCAAAGCTTCCGCCACCGTCAACCAATTACACC
GCCGTCGACTTTTCTCTATCACAGAAATAAAGGTACTCTTCTATCTCCAT
TTCTTTAATCTCTAGTTTTCTTATATCAAATTTCATTTTTTATCTCATTT
GAATCAACATGTTTATAATACTGTTTAATATGTACACTCACACCAAGCTG
TTTGTGGAAATGCCTCAACAACTTTATACATGATATATAATCTTTGATTA
AAAGTTTCGATGATTAATTTGCCGTGTTTTAATCTTAGTGGTACTTTGAG
TCATTCTGTTGCAAATTTAGGTTCTTTAGTTGATTTAGTTGATATCAGAT
TGGAGGGTAGTGCCTAGTAATTGGACACAGTATTTGTTGTTGAGGATGAG
CTCATGAGAATTCTCATTCTGGTGAGGAATTTTGTGCCTAGTTACCATCA
GTCTATTACAGGAGAATGGGATGTTGCTGGCATTGCACATAGAGCCTATG
ATCTTGAAGGAAAGACGATAGGAACGGTGGGTGCTGGACGAATCGGGAAG
CTTTTACTCCAAAGGCTGAAACCTTTTAACTGTTACCAGATACAGAGAGA
TGGTTAG
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Coding sequence (CDS) from alignment at chr1LG6:64777334..64778240+

>Psat1g041880.1_Ps_Cameor_v1a ID=Psat1g041880.1_Ps_Cameor_v1a; Name=Psat1g041880.1; organism=Pisum sativum; type=CDS; length=408bp; location=Sequence derived from: chr1LG6:64777334..64778240+ (Pisum sativum
ATGAGAATTCTCATTCTGGTGAGGAATTTTGTGCCTAGTTACCATCAGTC
TATTACAGGAGAATGGGATGTTGCTGGCATTGCACATAGAGCCTATGATC
TTGAAGGAAAGACGATAGGAACGGTGGGTGCTGGACGAATCGGGAAGCTT
TTACTCCAAAGGCTGAAACCTTTTAACTGTTACCAGATACAGAGAGATGG
TTAGATGAGAATTCTCATTCTGGTGAGGAATTTTGTGCCTAGTTACCATC
AGTCTATTACAGGAGAATGGGATGTTGCTGGCATTGCACATAGAGCCTAT
GATCTTGAAGGAAAGACGATAGGAACGGTGGGTGCTGGACGAATCGGGAA
GCTTTTACTCCAAAGGCTGAAACCTTTTAACTGTTACCAGATACAGAGAG
ATGGTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006140D-isomer_DH_NAD-bd
IPR036291NAD(P)-bd_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0055114obsolete oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0051287NAD binding