Psat4g003880.1

Transcript Overview
NamePsat4g003880.1
Unique NamePsat4g003880.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length757
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr4LG4supercontigchr4LG4:4275362..4276118 -Pisum sativum Cameor genome v1an/a
chr4LG4supercontigchr4LG4:4275362..4276118 -Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspsL06Pisum sativum Cameor genome v1aPisum sativum
psvuR303Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR308Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR359Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR361Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR348Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR375Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR377Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pszwsR284Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR306Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pszwsR334Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR307Vicia faba cv. Tiffany genome v1.0Vicia faba
pstifR312Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR271Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR299Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvfhR307Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR260Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR261Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR298Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR302Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvssR348Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR289Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR359Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvssR361Vicia sativa cv. Studenica genome v1.0Vicia sativa
psvuaR313Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR315Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvumR287Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR291Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR398Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR401Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR323Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR329Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvvaR390Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR279Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR284Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR299Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvasR360Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR363Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR377Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR380Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvunR282Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
psvunR293Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
psvunR342Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
psvunR343Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR389Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
jg39132.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.01G381300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.model.Chr03.1097Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.01G542400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_05G00753.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun06g154400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr06.1001635Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Hedin2.R1.4g241240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun03g441200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
XM_058871922.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Phvul.003G084300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun03g441200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_014652784.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigst.05G073200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_014662488.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg48514.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.4g184960.1Vicia faba cv. Tiffany genome v1.0Vicia faba
evm.model.Chr06.1612Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Phvul.006G142600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigan.05G091900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_01G04118.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun06g154400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Psat04G0010500-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat4g003880Psat4g003880_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003880.1Psat4g003880.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat4g003880.1_Ps_Cameor_v1aPsat4g003880.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003880.1.five_prime_utr1Psat4g003880.1.five_prime_utr1_Ps_Cameor_v1aPisum sativumfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003880.1.cds1Psat4g003880.1.cds1_Ps_Cameor_v1aPisum sativumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003880.1.exon1Psat4g003880.1.exon1_Ps_Cameor_v1aPisum sativumexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat4g003880.1.three_prime_utr1Psat4g003880.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
[Close]
BLAST of Psat4g003880.1 vs. DB:Swiss
Match: CYT5_ARATH (Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana OX=3702 GN=CYS5 PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 8.538e-13
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   88 GGYHYRPLTYINE-YVVEIANFAVVEYCKESGTKVNLNKVIKGESSTVNEGINYRLTLSVVGEDSVSKIYESVVWESPLLPFRILISF 348
            GG+   P++ + +  VVEI  FAV EY K S + +    V+ GE+  V+ G NYRL ++    D VSK Y ++VW+ P + FR L SF
Sbjct:   29 GGWS--PISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSGETQVVS-GTNYRLKVAANDGDGVSKNYLAIVWDKPWMKFRNLTSF 113
[Close]
BLAST of Psat4g003880.1 vs. DB:Swiss
Match: CYT1_ACTDE (Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa OX=3627 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.985e-10
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:   82 APGGYHYRPLTYINEY-VVEIANFAVVEYCKESGTKVNLNKVIKGESSTVNEGINYRLTLSVVGEDSVSKIYESVVWESPLLPFRILISF 348
            A GG+  RP+  +N   V ++A FAV E+ K++  ++    V++G +  V  G NYRL ++   + +V   YE+VVW+ P + FR L SF
Sbjct:   28 AAGGW--RPIESLNSAEVQDVAQFAVSEHNKQANDELQYQSVVRGYTQVV-AGTNYRLVIAA-KDGAVVGNYEAVVWDKPWMHFRNLTSF 113
The following BLAST results are available for this feature:
BLAST of Psat4g003880.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
CYT5_ARATH8.538e-1340.91Cysteine proteinase inhibitor 5 OS=Arabidopsis tha... [more]
CYT1_ACTDE5.985e-1036.67Cysteine proteinase inhibitor 1 OS=Actinidia delic... [more]
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000010Cystatin domainPFAMPF16845SQAPIcoord: 42..116
e-value: 9.8E-20
score: 70.7
IPR000010Cystatin domainCDDcd00042CYcoord: 30..116
e-value: 2.53118E-6
score: 40.9204
NoneNo IPR availableGENE3D3.10.450.10coord: 26..120
e-value: 1.2E-19
score: 72.3
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 40..116

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat4g003880.1_Ps_Cameor_v1a ID=Psat4g003880.1_Ps_Cameor_v1a; Name=Psat4g003880.1; organism=Pisum sativum; type=mRNA; length=757bp
TATAAAATAAATCTTGATCATTCTTCTAAGGAATATATACATGTATAAAA
TATATTATATAATTGGTATACATTTACCCACAATTTTACATAGTAACTTA
AGAAAAAAAAACCAAAATAATAACAAACCCGGTAAAGCTAACCATTTCCA
AAGCTTGAAAAGATAACGTGAATTTAATGTTATATTTAAATAATACAGCA
TAAATAAAAAAGAAAAACTATGTTAGGCTTAACCATTTTAGAAGCTTGAA
ATGAAAACAGCTATGAAACTCCAAACCCTAATTCTTCTGATGGTTATTCT
AATGGCTTATGCGGCTGCATGGGAACAATCTGCACCAGGTGGTTATCATT
ACAGACCCCTTACATACATCAACGAATACGTCGTGGAAATCGCCAACTTC
GCCGTGGTTGAATACTGCAAAGAAAGTGGTACGAAGGTGAACTTAAATAA
AGTGATAAAGGGTGAATCATCGACGGTTAATGAAGGGATTAACTACCGCC
TCACCCTCTCTGTCGTCGGTGAGGATTCCGTTTCAAAGATCTATGAAAGT
GTTGTGTGGGAGAGTCCATTGCTTCCTTTTCGAATCCTCATTTCCTTTAT
AGGTCTACGTGCTTAAATATTAAACTTTGTGGCCATCTTATTGCCACTCC
TATGAAAGTGGAAAATCCAATAAAAGTTTATTAAATAGTAACGATGTAAT
GTGATGAGATGCCCTCACTAATTGATAATTAAAATTATTTTATACTATTG
ATGTAAT
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protein sequence of Psat4g003880.1_Ps_Cameor_v1a

>Psat4g003880.1_Ps_Cameor_v1a ID=Psat4g003880.1_Ps_Cameor_v1a; Name=Psat4g003880.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=122bp
MKTAMKLQTLILLMVILMAYAAAWEQSAPGGYHYRPLTYINEYVVEIANF
AVVEYCKESGTKVNLNKVIKGESSTVNEGINYRLTLSVVGEDSVSKIYES
VVWESPLLPFRILISFIGLRA*
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mRNA from alignment at chr4LG4:4275362..4276118-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat4g003880.1_Ps_Cameor_v1a ID=Psat4g003880.1_Ps_Cameor_v1a; Name=Psat4g003880.1; organism=Pisum sativum; type=mRNA; length=757bp; location=Sequence derived from: chr4LG4:4275362..4276118- (Pisum sativum
TATAAAATAAATCTTGATCATTCTTCTAAGGAATATATACATGTATAAAA
TATATTATATAATTGGTATACATTTACCCACAATTTTACATAGTAACTTA
AGAAAAAAAAACCAAAATAATAACAAACCCGGTAAAGCTAACCATTTCCA
AAGCTTGAAAAGATAACGTGAATTTAATGTTATATTTAAATAATACAGCA
TAAATAAAAAAGAAAAACTATGTTAGGCTTAACCATTTTAGAAGCTTGAA
ATGAAAACAGCTATGAAACTCCAAACCCTAATTCTTCTGATGGTTATTCT
AATGGCTTATGCGGCTGCATGGGAACAATCTGCACCAGGTGGTTATCATT
ACAGACCCCTTACATACATCAACGAATACGTCGTGGAAATCGCCAACTTC
GCCGTGGTTGAATACTGCAAAGAAAGTGGTACGAAGGTGAACTTAAATAA
AGTGATAAAGGGTGAATCATCGACGGTTAATGAAGGGATTAACTACCGCC
TCACCCTCTCTGTCGTCGGTGAGGATTCCGTTTCAAAGATCTATGAAAGT
GTTGTGTGGGAGAGTCCATTGCTTCCTTTTCGAATCCTCATTTCCTTTAT
AGGTCTACGTGCTTAAATATTAAACTTTGTGGCCATCTTATTGCCACTCC
TATGAAAGTGGAAAATCCAATAAAAGTTTATTAAATAGTAACGATGTAAT
GTGATGAGATGCCCTCACTAATTGATAATTAAAATTATTTTATACTATTG
ATGTAAT
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Coding sequence (CDS) from alignment at chr4LG4:4275362..4276118-

>Psat4g003880.1_Ps_Cameor_v1a ID=Psat4g003880.1_Ps_Cameor_v1a; Name=Psat4g003880.1; organism=Pisum sativum; type=CDS; length=732bp; location=Sequence derived from: chr4LG4:4275362..4276118- (Pisum sativum
ATGAAAACAGCTATGAAACTCCAAACCCTAATTCTTCTGATGGTTATTCT
AATGGCTTATGCGGCTGCATGGGAACAATCTGCACCAGGTGGTTATCATT
ACAGACCCCTTACATACATCAACGAATACGTCGTGGAAATCGCCAACTTC
GCCGTGGTTGAATACTGCAAAGAAAGTGGTACGAAGGTGAACTTAAATAA
AGTGATAAAGGGTGAATCATCGACGGTTAATGAAGGGATTAACTACCGCC
TCACCCTCTCTGTCGTCGGTGAGGATTCCGTTTCAAAGATCTATGAAAGT
GTTGTGTGGGAGAGTCCATTGCTTCCTTTTCGAATCCTCATTTCCTTTAT
AGGTCTACGTGCTTAAATGAAAACAGCTATGAAACTCCAAACCCTAATTC
TTCTGATGGTTATTCTAATGGCTTATGCGGCTGCATGGGAACAATCTGCA
CCAGGTGGTTATCATTACAGACCCCTTACATACATCAACGAATACGTCGT
GGAAATCGCCAACTTCGCCGTGGTTGAATACTGCAAAGAAAGTGGTACGA
AGGTGAACTTAAATAAAGTGATAAAGGGTGAATCATCGACGGTTAATGAA
GGGATTAACTACCGCCTCACCCTCTCTGTCGTCGGTGAGGATTCCGTTTC
AAAGATCTATGAAAGTGTTGTGTGGGAGAGTCCATTGCTTCCTTTTCGAA
TCCTCATTTCCTTTATAGGTCTACGTGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000010Cystatin_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004869cysteine-type endopeptidase inhibitor activity