Psat6g005640.1

Transcript Overview
NamePsat6g005640.1
Unique NamePsat6g005640.1_Ps_Cameor_v1a
TypemRNA
OrganismPisum sativum (pea)
Sequence length693
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
chr6LG2supercontigchr6LG2:3951430..3952122 +Pisum sativum Cameor genome v1an/a
chr6LG2supercontigchr6LG2:3951430..3952122 +Pisum sativum Cameor genome v1an/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan: P. sativum Cameor genome v1a2019-09-12
BLAST: P. sativum Cameor genome v1a vs. Swissprot2019-09-12
Pisum sativum Cameor genome v1a2019-09-06
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
crpsL366Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpsL373Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipsL401Cicer arietinum ICC 4958 genome v2Cicer arietinum
capsL340Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
psvuR622Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuR651Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvR580Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvR700Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pszwsR594Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pstifR649Vicia faba cv. Tiffany genome v1.0Vicia faba
psvfhR634Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
psvrvR508Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvrvR512Vigna radiata cv. VC1973A genome v6.0Vigna radiata
psvuaR592Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvuaR599Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
psvssR715Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpsL343Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpsL597Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpsL764Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpsL320Cicer arietinum
ccapsL546Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapsL663Cajanus cajan cv. Asha genome v2.0Cajanus cajan
psvumR664Vigna umbellata FF25 genome v1.0Vigna umbellata
psvumR692Vigna umbellata FF25 genome v1.0Vigna umbellata
psvvaR756Vicia villosa cv. AU Merit genome v1.0Vicia villosa
psvasR583Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvasR599Vigna angularis cv. Shumari genome v1.a1Vigna angularis
psvstR592Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
psvstR619Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pspvfR606Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
psvunR596Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
psvunR623Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pspvfR737Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Psat6g005640Psat6g005640_Ps_Cameor_v1aPisum sativumgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005640.1Psat6g005640.1_Ps_Cameor_v1a-proteinPisum sativumpolypeptide
Psat6g005640.1_Ps_Cameor_v1aPsat6g005640.1_Ps_Cameor_v1aPisum sativumpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005640.1.cds1Psat6g005640.1.cds1_Ps_Cameor_v1aPisum sativumCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005640.1.exon1Psat6g005640.1.exon1_Ps_Cameor_v1aPisum sativumexon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Psat6g005640.1.three_prime_utr1Psat6g005640.1.three_prime_utr1_Ps_Cameor_v1aPisum sativumthree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Psat6g005640.1 vs.
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..40

Sequences
The following sequences are available for this feature:

mRNA sequence

>Psat6g005640.1_Ps_Cameor_v1a ID=Psat6g005640.1_Ps_Cameor_v1a; Name=Psat6g005640.1; organism=Pisum sativum; type=mRNA; length=693bp
ATGGGCATACAGGATGCTGATGAAGGAGCACATGTCAATACATTTACTGA
GGCTGCAGATTTAAATGATGTAAATGAAAGTACACATCCTGAAAGTATCC
GAAGAAAATCCTCAGTGTCTAATGGAACTGCTAGTAGAGATACCATTGTG
GATATGTTGGCTTCATTAATAGAAGTGGTACGGACAACAGTTTCCTGTGA
ATATGTTTATGTTCGAGCGACAGTGATCGAGGCATTGATCTGGATGCAAG
GCCCAATCGACTCATTTGATGAAATAGAATCCATTATTGCATCAGAACTC
TCTGATCCAGCTTGGTCGGCATGCCTATTAAATGATGTATTGCTTACTCT
ACATGCTCGTTTTAAGGCTTCTCCCGATATGGTCGTTACTCTCCTTGAAA
TTGATTGAATATTTGCTACTAAAGTTCCAGGAAAGGTTGATGTTGATGAG
CTATAATTACTTTGGAAAACTTGTCTTGTTGGAGCTGGTCCTGATGGGAA
ACATTAAGCTTTAGAAGTAGTCACAATTGTTCTTGATCTACCACCTCCCT
AACCAGGATCTATGCTTGGTCTGACTTTCTTTGGAAAACTTGTCTTGTTG
GAGCTGGTCCTGATGGGAAACATTAAGCTTTAGAAGTAGTCACAATTGTT
CTTGATCTACCACCTCCCTAACCAGGATCTATGCTTGGTCTGA
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protein sequence of Psat6g005640.1_Ps_Cameor_v1a

>Psat6g005640.1_Ps_Cameor_v1a ID=Psat6g005640.1_Ps_Cameor_v1a; Name=Psat6g005640.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=136bp
MGIQDADEGAHVNTFTEAADLNDVNESTHPESIRRKSSVSNGTASRDTIV
DMLASLIEVVRTTVSCEYVYVRATVIEALIWMQGPIDSFDEIESIIASEL
SDPAWSACLLNDVLLTLHARFKASPDMVVTLLEID*
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mRNA from alignment at chr6LG2:3951430..3952122+

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Psat6g005640.1_Ps_Cameor_v1a ID=Psat6g005640.1_Ps_Cameor_v1a; Name=Psat6g005640.1; organism=Pisum sativum; type=mRNA; length=693bp; location=Sequence derived from: chr6LG2:3951430..3952122+ (Pisum sativum
ATGGGCATACAGGATGCTGATGAAGGAGCACATGTCAATACATTTACTGA
GGCTGCAGATTTAAATGATGTAAATGAAAGTACACATCCTGAAAGTATCC
GAAGAAAATCCTCAGTGTCTAATGGAACTGCTAGTAGAGATACCATTGTG
GATATGTTGGCTTCATTAATAGAAGTGGTACGGACAACAGTTTCCTGTGA
ATATGTTTATGTTCGAGCGACAGTGATCGAGGCATTGATCTGGATGCAAG
GCCCAATCGACTCATTTGATGAAATAGAATCCATTATTGCATCAGAACTC
TCTGATCCAGCTTGGTCGGCATGCCTATTAAATGATGTATTGCTTACTCT
ACATGCTCGTTTTAAGGCTTCTCCCGATATGGTCGTTACTCTCCTTGAAA
TTGATTGAATATTTGCTACTAAAGTTCCAGGAAAGGTTGATGTTGATGAG
CTATAATTACTTTGGAAAACTTGTCTTGTTGGAGCTGGTCCTGATGGGAA
ACATTAAGCTTTAGAAGTAGTCACAATTGTTCTTGATCTACCACCTCCCT
AACCAGGATCTATGCTTGGTCTGACTTTCTTTGGAAAACTTGTCTTGTTG
GAGCTGGTCCTGATGGGAAACATTAAGCTTTAGAAGTAGTCACAATTGTT
CTTGATCTACCACCTCCCTAACCAGGATCTATGCTTGGTCTGA
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Coding sequence (CDS) from alignment at chr6LG2:3951430..3952122+

>Psat6g005640.1_Ps_Cameor_v1a ID=Psat6g005640.1_Ps_Cameor_v1a; Name=Psat6g005640.1; organism=Pisum sativum; type=CDS; length=816bp; location=Sequence derived from: chr6LG2:3951430..3952122+ (Pisum sativum
ATGGGCATACAGGATGCTGATGAAGGAGCACATGTCAATACATTTACTGA
GGCTGCAGATTTAAATGATGTAAATGAAAGTACACATCCTGAAAGTATCC
GAAGAAAATCCTCAGTGTCTAATGGAACTGCTAGTAGAGATACCATTGTG
GATATGTTGGCTTCATTAATAGAAGTGGTACGGACAACAGTTTCCTGTGA
ATATGTTTATGTTCGAGCGACAGTGATCGAGGCATTGATCTGGATGCAAG
GCCCAATCGACTCATTTGATGAAATAGAATCCATTATTGCATCAGAACTC
TCTGATCCAGCTTGGTCGGCATGCCTATTAAATGATGTATTGCTTACTCT
ACATGCTCGTTTTAAGGCTTCTCCCGATATGGTCGTTACTCTCCTTGAAA
TTGATTGAATGGGCATACAGGATGCTGATGAAGGAGCACATGTCAATACA
TTTACTGAGGCTGCAGATTTAAATGATGTAAATGAAAGTACACATCCTGA
AAGTATCCGAAGAAAATCCTCAGTGTCTAATGGAACTGCTAGTAGAGATA
CCATTGTGGATATGTTGGCTTCATTAATAGAAGTGGTACGGACAACAGTT
TCCTGTGAATATGTTTATGTTCGAGCGACAGTGATCGAGGCATTGATCTG
GATGCAAGGCCCAATCGACTCATTTGATGAAATAGAATCCATTATTGCAT
CAGAACTCTCTGATCCAGCTTGGTCGGCATGCCTATTAAATGATGTATTG
CTTACTCTACATGCTCGTTTTAAGGCTTCTCCCGATATGGTCGTTACTCT
CCTTGAAATTGATTGA
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