Psat6g006320.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.332e-32 Identity = 100/291 (34.36%), Postives = 161/291 (55.33%), Query Frame = 1 Query: 73 KLDAELLKSLDVTLMRLQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMF---------QLRLFQEVLKRSFFKRFNRD-INSKLRKLIEKLQHLRNQNPGLNVRGFYRVWNVTP-----TNSVVGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKRNETDGLKIXXXXXXXXXWAKKI--LLVLDDIWDGRYVHWNKLNDIFNVGEVGKGLIPYPESDKT 894 +L+ LL+ L L+ + ++L DAE+K IT+P V+ W+N+L D+VY AED D+I TE LR+ +LR + + F N + + ++L K+ +L+ L +Q N+ G + + P T S+V DES ++GRDD+ ++ L+ E + I V++IVG+ G GKTTL++LLYND VR F + W H+ + D+F TK + ES TS+ E L +LQ++L++ L + LLVLDD+W+ + W+ L F G ++ S + Sbjct: 33 ELNENLLERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDIATEALRLNIGAESSSSNRLRQLRGRMSLGDFLDGNSEHLETRLEKVTIRLERLASQR---NILGLKELTAMIPKQRLPTTSLV-DESEVFGRDDDKDEIMRFLIPENGKDNGITVVAIVGIGGVGKTTLSQLLYNDQHVRSYFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLTGTGLPFLLVLDDLWNENFADWDLLRQPFIHAAQGSQILVTTRSQRV 319
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum OX=147425 GN=RGA4 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.190e-23 Identity = 79/277 (28.52%), Postives = 133/277 (48.01%), Query Frame = 1 Query: 100 LDVTLMRLQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMFQLRLFQEVLKRSFFK----RFNRDINSKLRKLIEKLQHLRNQNPGLNVRGFYRVWNVTPTNSVVGD--------ESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKRNETDGLKIXXXXXXXXXWAKKILLVLDDIWDGRYVHWNKLNDIFNVGEVGKGLIPYPESDKT 894 L +Q++L DA++K + D ++NWL KL+ YE +D+ E E +R Q RL F+ F I ++++++EKL + + R F+ + +T + E +YGRD E ++ ++L++ + ++ V I+GM G GKTTLA++++ND V FN + W + D D KTI+ + + L Q +LQ+ L K+ LLVLDD+W+ W KL + VG G ++ +K Sbjct: 34 LSSVFSTIQAVLQDAQEKQLKDKAIENWLQKLNSAAYEVDDILGECKNEAIRFEQSRL-------GFYHPGIINFRHKIGRRMKEIMEKLDAISEER-----RKFHFLEKITERQAAAATRETGFVLTEPKVYGRDKEEDEIVKILINNVNVAEELPVFPIIGMGGLGKTTLAQMIFNDERVTKHFNPKIWVCVSDDFDEKRLIKTIIGNIERSSPHVEDLASFQKKLQELLNGKRYLLVLDDVWNDDLEKWAKLRAVLTVGARGASILATTRLEKV 298
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 7.242e-22 Identity = 79/264 (29.92%), Postives = 136/264 (51.52%), Query Frame = 1 Query: 94 KSLDVTLMRLQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMFQLRLFQEVLKRSFFKR---FNRDINSKLRKLIEKLQHLRNQ--NPGLNVRGFYRVWNVTPTNSVVGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKRNETDGLKIXXXXXXXXXWAKKILLVLDDIWDGRYVHWNKLNDIFNVGEVGKGLI 870 K L +Q++L DA++K + +KNWL KL+ YE +D+ D+ TE R F++ + + R F + ++++++EKL + + N L+ R R T V+ E +YGR+ E ++ ++L++ ++ V+ I+GM G GKTTLA++++ND + + FNL+ W + D D K I+ES K L LQ +LQ+ L K+ LVLDD+W+ W+ L + +G G ++ Sbjct: 32 KKLSSMFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAAR------FKQAVLGRYHPRTITFCYKVGKRMKEMMEKLDAIAEERRNFHLDERIIERQAARRQTGFVL-TEPKVYGREKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASIL 288
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana OX=3702 GN=At3g14460 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.714e-20 Identity = 86/280 (30.71%), Postives = 141/280 (50.36%), Query Frame = 1 Query: 73 KLDAELLKSLDVTLMRLQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMFQLR-------LFQEVLKRSFFKRFNRDINSKLRKLIEKLQHLRNQNPGLNVRGFYRV----WNVTPTNSVVGD--ESAIYGRDDEVKKLKELLMSEEDXXXXX-XXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKRNETDGLKIXXXXXXXXXWAKKILLVLDDIWDGRYVHWNKLNDIFNVGEVGKGLI 870 K + LLK L V L+ +L DA+++ EVK+WL + D ++AED+ DE+ TE LR + LFQ ++ + + I K+ K++ L+H + ++ + W + S D + + GR ++ L LL+S+++ VIS+VGM G GKTTL ++++ND+ V + F ++ W + ++FT TK +L+ TS T+ L LQ+QL++TL K+ LLVLDD W W F E G ++ Sbjct: 30 KSSSALLKRLKVALVTANPVLADADQRAEHVREVKHWLTGIKDAFFQAEDILDELQTEALRRRVVAEAGGLGGLFQNLMAGR--EAIQKKIEPKMEKVVRLLEHHVKHIEVIGLKEYSETREPQWRQA-SRSRPDDLPQGRLVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKMWISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLDDFWSESDSEWESFQVAFTDAEEGSKIV 306
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.949e-19 Identity = 76/251 (30.28%), Postives = 129/251 (51.39%), Query Frame = 1 Query: 121 LQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMFQL---RLFQEVLKRSFFKRFNRDINSKLRKLIEKLQHLRNQNPGLNVRG--FYRVWNVTPTNSVVGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKRNETDGLKIXXXXXXXXXWAKKILLVLDDIWDGRYVHWNKLNDIFNVGEVG 858 +Q++L DA++K + D ++NWL KL+ YE +D+ DE T+ R Q R +V+ F + ++ ++++KL + + +++ R T SV+ E +YGRD E ++ ++L++ K+ V+ I+GM G GKTTL+++++ND V ++F + W I D + K I+ES K L LQ +LQ+ L K+ LVLDD+W+ W L + VG G Sbjct: 41 IQAVLEDAQEKQLNDKPLENWLQKLNAATYEVDDILDEYKTKATRFLQSEYGRYHPKVIP------FRHKVGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETGSVL-TEPQVYGRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASG 284
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 5.899e-19 Identity = 79/257 (30.74%), Postives = 135/257 (52.53%), Query Frame = 1 Query: 121 LQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMFQL---RLFQEVLKRSFFKRFNRDINSKLRKLIEKLQHL--RNQNPGLNVRGFYRVWNVTPTNSVVGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKR--NETDGLKIXXXXXXXXXWAKKILLVLDDIWDGRYVHWNKLNDIFNVGEVGKGLI 870 +Q++L DA++K + + ++NWL KL+ YE +D+ DE T+ R Q R +V+ F + ++ ++++KL+ + +N L+ + R T SV+ E +YGRD E ++ ++L++ + V+ I+GM G GKTTLA++++ND V + F+ + W + D D K I+ES + E D L LQ +LQ+ L K+ LLVLDD+W+ W L + VG G ++ Sbjct: 41 IQAVLEDAQEKQLNNKPLENWLQKLNAATYEVDDILDEYKTKATRFSQSEYGRYHPKVIP------FRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRRETGSVL-TEPQVYGRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIWICVSEDFDEKRLIKAIVESIEGRPLLGEMD-LAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLKVGASGASVL 289
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RPP13L4 PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 3.607e-11 Identity = 76/293 (25.94%), Postives = 142/293 (48.46%), Query Frame = 1 Query: 34 SLDALREKIASATKLDAELLKSLDVTLMRLQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDL-RMFQLRLFQEVLKRSFFKR--FNRDINSKLRKLIEKLQHLRNQNPGLNVRGFYRVWNVTPTN-----------SVVGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKRNETDGLKIXXXXXXXXXWAKKILLVLDDIWDGRYVHWNKLNDIFNVGEVGKGLI 870 +L+ L EK + + +L + L L +QS L DAE++ T+ ++ + L +LVYEAED+ + D + R L R R + +L+++ E++ +++Q V ++ +TP+N S V D + + G + + +K+KE L D S++ +++ VGM G GKTT+A+ ++ND ++ +F R W + ++IL + + D + L ++QQ L K+ L+V+DD+WD W+K+ G+ G ++ Sbjct: 13 TLNILEEKGRTVSDYRKQL-EDLQSELKYMQSFLKDAERQKRTNETLRTLVADLRELVYEAEDILVDCQLADGDDGNEQRSSNAWLSRLHPARVPLQYKKSKRLQEINERITKIKSQ-----VEPYFEF--ITPSNVGRDNGTDRWSSPVYDHTQVVGLEGDKRKIKEWLFRSND--SQLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNL-GDASVGDDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPRGQGGSVIV 294
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: DRL8_ARATH (Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana OX=3702 GN=At1g58400 PE=3 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 3.501e-8 Identity = 69/279 (24.73%), Postives = 123/279 (44.09%), Query Frame = 1 Query: 82 AELLKSLDVTLMRLQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMFQLRLFQEVLKRSFFK----RFNRDINS---KLRKLIEKLQ---------------HLRNQNPGLNVRGFYRVWNVTPTNSVVGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSKRNETDGLKIXXXXXXXXXW----AKKILLVLDDIWDGRYVHWNKLNDIF 840 AEL +L++ L+S L DAE K T V++ + ++ ++VY+ E++ + ++ + + + + K + K F DI ++ K+I+ + HL + + F R G ES G + VKKL L+ E+D M G GKTTLA+ ++N DV+ +F+ W + + + IL++ TS+ + + L++ + +L L+ K L+V DDIW + W +N IF Sbjct: 32 AELKSNLNL----LKSFLKDAEAKKNTSQMVRHCVEEIKEIVYDTENMIETFILKEAARKRSGIIRRITKLTCIKVHRWEFASDIGGISKRISKVIQDMHSFGVQQMISDGSQSSHLLQEREREMRQTFSR-----------GYESDFVGLEVNVKKLVGYLVEEDDIQIVSVTG----MGGLGKTTLARQVFNHEDVKHQFDRLAWVCVSQEFTRKNVWQMILQNLTSRETKDEILQMEEAELHDELFQLLETSKSLIVFDDIW--KEEDWGLINPIF 289
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: RPP13_ARATH (Disease resistance protein RPP13 OS=Arabidopsis thaliana OX=3702 GN=RPP13 PE=2 SV=2) HSP 1 Score: 58.9214 bits (141), Expect = 6.357e-8 Identity = 72/270 (26.67%), Postives = 111/270 (41.11%), Query Frame = 1 Query: 67 ATKLDAELLKSLDVTLMRLQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDEINTEDLRMFQLRLFQEVLKRSFFKRFNRDINSKL---------RKLIEKLQHLRNQNPGLNVRGFYRVWNVTPTNSV----------VGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESF--TSKRNETDGLKIXXXXXXXXXW----AKKILLVLDDIWD 801 A K D E LK+ L + L D E + D K W + D Y+ ED+ D + L+L +E +R +R I K+ R L ++ + + + G T+S+ V E + G +D+ K L E L+ E+ I I M G GKT LA+ LYN DV+++F R WT++ + I+ S TS K + +L+ L+ KK L+V+DDIW+ Sbjct: 26 AVKEDLEELKT---ELTCIHGYLKDVEAREREDEVSKEWSKLVLDFAYDVEDVLD--------TYHLKL-EERSQRRGLRRLTNKIGRKMDAYSIVDDIRILKRRILDITRKRETYGIGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISIFG--MGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEKIRKFAEEELEVYLYGLLEGKKYLVVVDDIWE 281
BLAST of Psat6g006320.1 vs. DB:Swiss
Match: RX24L_ARATH (Probable disease resistance protein RXW24L OS=Arabidopsis thaliana OX=3702 GN=RXW24L PE=2 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.069e-7 Identity = 72/272 (26.47%), Postives = 121/272 (44.49%), Query Frame = 1 Query: 121 LQSLLHDAEKKWITDPEVKNWLNKLHDLVYEAEDLFDE-INTEDLRMFQLRLFQEVLKRSFFKRFNR----------------DINSKLRKLIEKLQHL----------RNQNP-GLNVRGFYRVWNVTPTNSVVGDESAIYGRDDEVKKLKELLMSEEDXXXXXXXXXXXXMAGSGKTTLAKLLYNDHDVRDKFNLRGWTHIPPDLDIFTFTKTILESFTSK--RNETDGLKIXXXXXXXXXW--AKKILLVLDDIWDGRYVHWNKLNDIF 840 L+S L DA+ K V++ + ++ D+VY+ ED+ + I E + M KR KR R I+ ++ K+I+ +Q R+ +P R ++ N VG E+ VKKL L+ ++D ++S+ GM G GKTTLA+ ++N V+D+F+ W + + + +TIL++ TSK ++E +K L + K L+VLDDIW + W+ + IF Sbjct: 39 LKSFLKDADAKKHISEMVRHCVEEIKDIVYDTEDIIETFILKEKVEM----------KRGIMKRIKRFASTIMDRRELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFVGMEA-------NVKKLVGYLVEKDD----YQIVSLTGMGGLGKTTLARQVFNHDVVKDRFDGFAWVSVSQEFTRISVWQTILQNLTSKERKDEIQNMKEADLHDDLFRLLESSKTLIVLDDIW--KEEDWDLIKPIF 287 The following BLAST results are available for this feature:
BLAST of Psat6g006320.1 vs. DB:Swiss
Analysis Date: 2019-09-12 (BLAST: P. sativum Cameor genome v1a vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: P. sativum Cameor genome v1a
Date Performed: 2019-09-12 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Psat6g006320.1_Ps_Cameor_v1a ID=Psat6g006320.1_Ps_Cameor_v1a; Name=Psat6g006320.1; organism=Pisum sativum; type=mRNA; length=2021bpback to top protein sequence of Psat6g006320.1_Ps_Cameor_v1a >Psat6g006320.1_Ps_Cameor_v1a ID=Psat6g006320.1_Ps_Cameor_v1a; Name=Psat6g006320.1_Ps_Cameor_v1a; organism=Pisum sativum; type=polypeptide; length=461bpback to top mRNA from alignment at chr6LG2:4429006..4431026- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Psat6g006320.1_Ps_Cameor_v1a ID=Psat6g006320.1_Ps_Cameor_v1a; Name=Psat6g006320.1; organism=Pisum sativum; type=mRNA; length=2021bp; location=Sequence derived from: chr6LG2:4429006..4431026- (Pisum sativumback to top Coding sequence (CDS) from alignment at chr6LG2:4429006..4431026- >Psat6g006320.1_Ps_Cameor_v1a ID=Psat6g006320.1_Ps_Cameor_v1a; Name=Psat6g006320.1; organism=Pisum sativum; type=CDS; length=2766bp; location=Sequence derived from: chr6LG2:4429006..4431026- (Pisum sativumback to top |