rna-KK1_019883

Transcript Overview
Namerna-KK1_019883
Unique Namerna-KK1_019883_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length1419
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1516279..1519401 -Cajanus cajan Asha genome v1.0n/a
Chr_1-CM003603.1supercontigChr_1-CM003603.1:1516279..1519401 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0011Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cccrR0043Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR022Pisum sativum Cameor genome v1aPisum sativum
ccpsR024Pisum sativum Cameor genome v1aPisum sativum
ccpsR033Pisum sativum Cameor genome v1aPisum sativum
ccccR001Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0004Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0019Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0003Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0016Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caccL0156Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0552Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0721Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0005Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0256Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0259Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0379Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0433Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0833Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0912Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cctifR0010Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0036Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0010Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0039Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0014Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0010Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0003Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0042Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0020Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canccL0553Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0728Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0331Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0697Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0594Cicer arietinum
carccL0777Cicer arietinum
ccccaR0000Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0054Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0009Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0042Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_16791Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr01.2314Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat5g095080.1Pisum sativum Cameor genome v1aPisum sativum
Vigun01g246300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg53560.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014639147.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Phvul.001G260800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Hedin2.R1.2g111760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va03G085190.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_11336Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_04G03218.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.2g091800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004502247.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_13027.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_00095.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_019883gene-KK1_019883_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019883rna-KK1_019883_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_019883_Cc_Asha_v1.0rna-KK1_019883_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1518769..1519401rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1518769..1519401Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517498..1517713rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517498..1517713Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517206..1517400rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517206..1517400Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516920..1517113rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516920..1517113Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516279..1516459rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516279..1516459Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1518769..1519401rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1518769..1519401Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517498..1517713rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517498..1517713Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517206..1517400rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517206..1517400Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516920..1517113rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516920..1517113Cajanus cajanCDS
rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516279..1516459rna-KK1_019883_Cc_Asha_v1.0-CDS-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516279..1516459Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1518769..1519401rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1518769..1519401Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517498..1517713rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517498..1517713Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517206..1517400rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1517206..1517400Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516920..1517113rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516920..1517113Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516279..1516459rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571847872:1516279..1516459Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1518769..1519401rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1518769..1519401Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517498..1517713rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517498..1517713Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517206..1517400rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1517206..1517400Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516920..1517113rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516920..1517113Cajanus cajanexon
rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516279..1516459rna-KK1_019883_Cc_Asha_v1.0-exon-Chr_1-CM003603.1_Cc_Asha_v1.0-1571082112:1516279..1516459Cajanus cajanexon


Homology
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA1_ARATH (Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=rsgA PE=2 SV=1)

HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0
Identity = 312/435 (71.72%), Postives = 356/435 (81.84%), Query Frame = 1
Query:  148 LLKAKQTLKEFSSLAPVLSL-EDVPSLTESQAIGVVAASQANFMRVIV--------PEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDA-AEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQSIXXXX---XXXXXXXXXXXXPILRALRNEN 1413
            +L+AK   K +SS    +   E  PSL ESQAIG VA +QANFMRVIV         +D+  SS T  GVELLCVVRA+LKKI+RRV+VGDKVLVGSIDWVDRRGMIENVF+R SEILDPPVANVDHLLVLFSL+QP+ EPFTLTRFLVEAEST IPLTLALNK EL+ +E + +WK RLRGW YEP+FCSV +  GLD +AF LRDQT+VIVGPSGVGKSSLIN LRSN      E ENWFEP+LG+KW DDQRVGEVS+RSGRGKHTTR+VSLLP+S GG+LADTPGFNQPSLLKVTK SLA  FPEIR M+   E+EKC F +CLH+GEPGCVVKGDWERY YY QLLDEIRIREEFQLRTFGTKRE DVR K+GDMGV+ AEPRL PKKHRR+SRK+  Q+++ EL   +D+D+ L  ENDPI++A+ NEN
Sbjct:    1 MLRAKHIGKNYSSSLSPVLSPEHKPSLLESQAIGTVATAQANFMRVIVQDVANSVTSDDDNDSSKT--GVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRSNHGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERYPYYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMISELDEFEDEDSDLYIENDPIVQAIENEN 430          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA2_ARATH (Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g67460 PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 3.445e-94
Identity = 156/267 (58.43%), Postives = 195/267 (73.03%), Query Frame = 1
Query:   58 GVPLLRRFRFLPTAARHQNPNNHPAAPSRNLLKAKQTLKEFSSLAPVLSLEDVPSLTESQAIGVVAASQANFMRVIVPEDEPSSSGTFR--GVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPI 852
            G+ + R F FL +A R +NPN      ++N    K  L+ F  LAPVL L++ P+L E QAIG +A + A++MRVIV +   S +G     GVELLCVVR LLKKI R V+VGDKVLV  +DWVDRR  I NVF+R SE+LDPPVANVDHL++LFSL+QP+ +PFTLTRFLVEAES GI +T+ALNK ELV +E + SWK RLR W YEP+FCSV +  G+D +AF LR+QT+VIVGPSGVGKSSLIN LRS+     + E  F+P+
Sbjct:   27 GLRIRRSFYFL-SAIRQENPN-----VTKNPHPNKTILRSF--LAPVLPLDEKPNLVELQAIGTIATALADYMRVIVQDVPESDNGEDDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKIINVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILRSSYGGDIKHEEVFKPV 285          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_ANAVT (Small ribosomal subunit biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rsgA PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.847e-90
Identity = 162/379 (42.74%), Postives = 216/379 (56.99%), Query Frame = 1
Query:  223 LTESQAIGVVAASQANFMRVIVPED--EPSSSGTFRGVEL------------LCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRK 1317
             T  Q +G V A QANF +V + +D  EP S G    V L            LC  R  LKKI ++VMVGD+V+V   DW   RG I  V +R +++  PP+AN D +L++F++  P  EP+ L+RFLV+AE+TG+ + L LNK +LV  EI      RL  WGY+P+F SVE    +D +A  L ++ TV+ GPSGVGKSSLIN+L  +                     + RVGEVS +  RG+HTTRHV L  L  GG LADTPGFNQP  +  + + L   FPE R+ L+      C FN+CLH  EP C V+GDWERY +Y + L +  I  + QL       E  +++K    G  Q EP+LE KK+RR SR+
Sbjct:    4 FTTGQLLGTVVAVQANFYKVQLDQDVREPGSRGAGEEVHLDSPLPLYPLSLLLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFAVADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVEKQINIDQIAKYLSNKITVVAGPSGVGKSSLINALIPDI--------------------NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLA---VASCRFNDCLHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-ESTLKLKTKGKGQSQYEPKLESKKYRRTSRR 356          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_MICAN (Small ribosomal subunit biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rsgA PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 3.316e-87
Identity = 151/363 (41.60%), Postives = 213/363 (58.68%), Query Frame = 1
Query:  244 GVVAASQANFMRVIVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQS 1332
            G V A QANF +V +            G  LLC  RA L+KI + VMVGD+V V   ++ D++G I  V  RS+EI  P VAN++ +L++F+L +P  +P+ ++RFLV+AESTG+ + + +NK++L + E I  W  RL GWGY P F SVE   G + L  +L  + T++ GPSGVGKSSLIN L                        +QRVG+VS +  +G+HTTRHV L  L   G LAD+PGFNQP  +    + L   FPE+R  L+      C FN+C H  EP CVV+GDWERY +Y + L+E   RE+   +T  + +E  +++K+ + G +  EP+L  KK+RR SR+  NQ 
Sbjct:   11 GTVVAVQANFYQVRL-------DSAVMGENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQILLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPFFVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCLIPEI--------------------NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPD-INCLPEELTFYFPEVRARLALG---NCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--STKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQD 340          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA1_NOSS1 (Small ribosomal subunit biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rsgA1 PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.122e-86
Identity = 160/379 (42.22%), Postives = 216/379 (56.99%), Query Frame = 1
Query:  223 LTESQAIGVVAASQANFMRVIVPED--EPSSSGTFRGVEL------------LCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRK 1317
             T  Q +G V A QANF +V + ++  E  S G    V L            LC  R  LKKI ++VMVGD+V+V   DW   RG I +V +R +++  PP+AN D +L++F++  P  EP+ L+RFLV+AE+TG+ + L LNK +LV  EI      RL  WGY+P+F SVE+   +D +A  L ++ TV+ GPSGVGKSSLIN+L  N                     + RVGEVS +  RG+HTTRHV L  L  GG LADTPGFNQP  +  + + L   FPE R+ L+      C FN+C H  EP C V+GDWERY +Y + L +  I  + QL       E  +++K    G  Q EP+LE KK+RR SR+
Sbjct:    4 FTTGQLLGTVVAVQANFYKVQLDQEVREQGSRGAGEEVHLDSPLPLCPLSLLLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQINIDQIAKYLSNKITVVAGPSGVGKSSLINALIPNI--------------------NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLA---IASCRFNDCSHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-ESTLKLKTKGKGQSQYEPKLESKKYRRTSRR 356          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_THEEB (Small ribosomal subunit biogenesis GTPase RsgA OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rsgA PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.285e-73
Identity = 145/357 (40.62%), Postives = 197/357 (55.18%), Query Frame = 1
Query:  232 SQAIGVVAASQANFMRVIVPEDEPSSSGTFRGVE-LLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKH 1299
            S  +G+V A QAN+ RV +   EPS+     GVE LLCV RA LKK+ ++V VGD V+V   DW  +RG I  +  R +++  P +ANVD +L+LF+L  P  +   +TRFL+ AE   + + +   K +LV  +    W+ RL+ WGY     S+  G     L   L ++ TV+ GPSGVGKSSLI  L                       +D RVG VS    RG+HTTRHV L PL+ GG++ADTPGFNQP L    +Q LA  FPEIR+ LS ++   C F+NC H  EPGC V+G+WERY  Y + L ++   E          +   V+ K    G Q+ EP L+ KK+
Sbjct:    2 SHLVGLVRAVQANYYRVRL--REPSN-----GVEELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILLLFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVLSLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR--------------------EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPEIRQRLSQDQ---CLFDNCRHDQEPGCCVRGNWERYPLYIEYLHQL---ETIASAEPSLAKVPLVKAKSDRQGQQRLEPLLDAKKY 324          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_SYNY3 (Small ribosomal subunit biogenesis GTPase RsgA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsgA PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.332e-73
Identity = 150/392 (38.27%), Postives = 209/392 (53.32%), Query Frame = 1
Query:  223 LTESQAIGVVAASQANFMRVIVPEDEPSSSGTFRGVE---LLCVVRALLKKIKRRVMVGDKVLV--------------GSIDWVDR--RGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGD--VRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQSI 1335
            +T++   G V A QAN+  V             R V    LLC  R  LKK+ ++VMVGD+V V                +  V     G I  V+ R + +  PPVAN + + ++F+L  P  E + L+RFLV+AE+TG+ ++L  NK +LV +  +  W  RL  WGY P+  SVE+  G++ L  KLR + +++ GPSGVGKSSLIN L                + G     +Q+V  VS +  +G+HTTRHV L  L  GG LADTPGFNQP  L V    L   FPE R+ L+  E   C F +CLH GEP C V  DWERY +Y   L+E+  ++  +       RE D  ++ K G  G +  EP+LE KK+RR SR++ +Q +
Sbjct:    1 MTKATDEGTVIAVQANYYWV-----------RLRNVTSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVYPRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQETDVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL----------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGFNQPD-LAVEPAQLIHLFPEARQQLTGQE---CFFKDCLHRGEPDCAVGQDWERYEHYLTFLEEVLAQQNPE-----NSRETDTGLKTKTGSDGQEYDEPKLETKKYRRHSRRQEHQEL 352          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_PROMA (Small ribosomal subunit biogenesis GTPase RsgA OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=rsgA PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.490e-62
Identity = 121/319 (37.93%), Postives = 175/319 (54.86%), Query Frame = 1
Query:  244 GVVAASQANFMRV------IVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRD-QTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEI 1179
            G+V A +AN+  V      ++PE      G      LLC  R+ L      V VGD VL+ +IDW    G+I  V  R + I  PPVANV  ++++ SL  P  +   ++RFL++AE TG+ +T+ L K +L+D++I+  +  +L+ WGY+P+  S+ +G G+  L+ +L+  +  V+ GPSGVGKSSLIN L    S                      +G++S +  RG+HTTRHV L  +    F+ADTPGFN+P       Q + Q FPE+R  L     +KC F NC+HL EP C +  DWERYS Y   L E+
Sbjct:   11 GIVLALKANYYIVQIDTINLIPELFKKKIGD-HNFRLLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIVVSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPISIVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLLPKISIP--------------------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPELRSQLL---IKKCKFRNCMHLNEPDCAISRDWERYSNYKNFLQEM 304          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_SYNPX (Small ribosomal subunit biogenesis GTPase RsgA OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rsgA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.026e-57
Identity = 123/317 (38.80%), Postives = 177/317 (55.84%), Query Frame = 1
Query:  232 SQAIGVVAASQANFMRVIVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRD-QTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEI 1179
            S+A+G+V A QAN++ V +  D+    G  R   LLC  R  L      V VGD+V V +ID V  R ++  V  R S +  P VANV  ++V  +++QP  +P   +RFL+ AE TG+P+ L L K +L+++    +   RL GWGY+ +  S ++G G+++L+ +L+D +  V+ GPSGVGKSS++N L  + +                     RVG VS R  RG+HTTRHV L P++ G  +ADTPGFN+P L       L   FPE+R  LS      C F +CLH  EPGC +  +WER+ +Y   L E 
Sbjct:    2 SEAVGIVVALQANYLEVEL--DQAPEQGLSR---LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVALAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVSSQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCLMPHLA--------------------LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPD-DPSELGMLFPELRVQLSP---WPCRFRDCLHRQEPGCGINREWERFEFYKDALQEC 289          
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_SYNSC (Small ribosomal subunit biogenesis GTPase RsgA OS=Synechococcus sp. (strain CC9605) OX=110662 GN=rsgA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.012e-57
Identity = 131/319 (41.07%), Postives = 169/319 (52.98%), Query Frame = 1
Query:  232 SQAIGVVAASQANFMRV---IVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRD-QTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDE 1176
            S A G+V A QAN++ V   + P+  P          LLC  R  L      V VGD+V V +ID    R ++  V  R S +  PPVANV  + V+ ++EQP  +P   +RFL+ AE TG+ + L L K +L+    +     RL+GWGY+P+  S  +G G+D L  +L   Q +V+ GPSGVGKSSL+N L               P L        R   VS R  RG+HTTRHV L PL     +ADTPGFN+P L +   Q L   FPE+RK L   +   C F +CLH GEPGC V  DWERYS Y   L E
Sbjct:    7 SVASGMVVALQANYLEVELDVAPDGCPG--------RLLCTRRTRLSHRGEAVYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVVLAVEQPSFDPDQASRFLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLAFSSAAGTGIDALRQRLAGAQLSVLCGPSGVGKSSLLNQL--------------CPDL------QLRTAAVSGRLQRGRHTTRHVELFPLGPSARVADTPGFNRPDLPE-DPQELGVLFPELRKQL---DPWPCRFRDCLHRGEPGCGVSTDWERYSLYEAALIE 293          
The following BLAST results are available for this feature:
BLAST of rna-KK1_019883 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RSGA1_ARATH0.000e+071.72Small ribosomal subunit biogenesis GTPase RsgA 1, ... [more]
RSGA2_ARATH3.445e-9458.43Small ribosomal subunit biogenesis GTPase RsgA 2, ... [more]
RSGA_ANAVT1.847e-9042.74Small ribosomal subunit biogenesis GTPase RsgA OS=... [more]
RSGA_MICAN3.316e-8741.60Small ribosomal subunit biogenesis GTPase RsgA OS=... [more]
RSGA1_NOSS11.122e-8642.22Small ribosomal subunit biogenesis GTPase RsgA 1 O... [more]
RSGA_THEEB1.285e-7340.62Small ribosomal subunit biogenesis GTPase RsgA OS=... [more]
RSGA_SYNY39.332e-7338.27Small ribosomal subunit biogenesis GTPase RsgA OS=... [more]
RSGA_PROMA1.490e-6237.93Small ribosomal subunit biogenesis GTPase RsgA OS=... [more]
RSGA_SYNPX2.026e-5738.80Small ribosomal subunit biogenesis GTPase RsgA OS=... [more]
RSGA_SYNSC5.012e-5741.07Small ribosomal subunit biogenesis GTPase RsgA OS=... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 153..331
e-value: 1.2E-44
score: 153.9
NoneNo IPR availableGENE3D1.10.40.50coord: 336..399
e-value: 1.3E-9
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 418..443
IPR010914RsgA GTPase domainPFAMPF03193RsgA_GTPasecoord: 150..334
e-value: 5.4E-57
score: 192.3
IPR010914RsgA GTPase domainPROSITEPS50936ENGC_GTPASEcoord: 163..330
score: 39.914
IPR004881Ribosome biogenesis GTPase RsgATIGRFAMTIGR00157TIGR00157coord: 127..270
e-value: 1.7E-32
score: 110.9
IPR004881Ribosome biogenesis GTPase RsgAHAMAPMF_01820GTPase_RsgAcoord: 80..397
score: 29.744
IPR004881Ribosome biogenesis GTPase RsgACDDcd01854YjeQ_EngCcoord: 163..391
e-value: 2.09689E-82
score: 251.548
IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainPROSITEPS51721G_CPcoord: 154..332
score: 37.159
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 157..395
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 80..153

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883; organism=Cajanus cajan; type=mRNA; length=1419bp
ATGTCGTTCGCTTCCTCATTCTCGCTGCTCCGCCACCGCGCGGCGGCGTC
TTCATCCGGCGTCCCTCTCTTGCGCCGCTTCCGCTTCCTCCCAACCGCTG
CGAGACACCAAAACCCTAACAACCACCCCGCCGCACCGAGCAGAAACCTC
CTGAAGGCGAAACAAACGCTGAAGGAGTTCTCCTCTCTCGCTCCGGTCCT
CTCCCTGGAAGACGTTCCCTCTCTCACGGAGTCCCAGGCCATCGGCGTCG
TGGCGGCGTCGCAGGCGAACTTCATGCGCGTCATCGTACCGGAAGACGAA
CCTTCCTCTTCCGGAACGTTCCGCGGCGTGGAGCTTCTGTGCGTGGTGAG
GGCGCTGCTGAAGAAGATTAAGCGCAGGGTTATGGTGGGTGACAAGGTGC
TGGTTGGTTCCATCGATTGGGTGGATCGCAGGGGCATGATTGAGAATGTG
TTTAATCGGAGTTCGGAGATTCTTGACCCTCCCGTTGCTAATGTTGACCA
CTTGCTCGTGCTGTTCTCGCTCGAGCAGCCCAGGCCTGAGCCGTTTACAC
TCACCAGGTTTCTCGTCGAAGCGGAATCCACCGGGATTCCTCTCACGCTC
GCGCTCAATAAGATGGAGCTTGTGGATAAAGAGATCATTAGTTCGTGGAA
GGCTAGGTTGCGCGGCTGGGGATATGAGCCAGTTTTTTGCAGCGTTGAAT
CTGGACATGGGCTTGATCTTCTTGCGTTCAAGTTGAGAGATCAAACGACA
GTGATTGTGGGTCCTAGTGGAGTTGGGAAATCGAGTTTGATAAATTCCCT
TAGAAGCAATCCTTCTGATGCTGCCGAAGGGGAGAATTGGTTTGAGCCTA
TTTTGGGAAGCAAGTGGTTAGATGATCAGCGAGTTGGGGAGGTTTCCACA
AGAAGTGGTAGAGGGAAACATACTACTCGCCATGTATCTCTGCTTCCATT
ATCTGGAGGGGGATTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTT
TATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATAAGG
AAAATGCTTAGTGCCAATGAGACTGAGAAATGTTCATTTAACAATTGCTT
GCATCTGGGTGAACCTGGGTGTGTTGTGAAGGGAGATTGGGAAAGATATT
CATACTATTTTCAACTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAG
CTGAGGACATTTGGAACTAAAAGAGAAGGCGATGTAAGGATTAAAATGGG
AGACATGGGTGTTCAGCAAGCAGAACCACGGTTGGAACCTAAAAAGCACA
GGAGACAATCTCGGAAGAGGATTAACCAGTCGATTTTAGATGAATTGGAT
GATGACGACAATTTGCTAGATGAGGAAAATGACCCCATTTTAAGGGCGCT
TAGGAATGAAAACTCTTAG
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protein sequence of rna-KK1_019883_Cc_Asha_v1.0

>rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=472bp
MSFASSFSLLRHRAAASSSGVPLLRRFRFLPTAARHQNPNNHPAAPSRNL
LKAKQTLKEFSSLAPVLSLEDVPSLTESQAIGVVAASQANFMRVIVPEDE
PSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENV
FNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTL
ALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTT
VIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVST
RSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIR
KMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQ
LRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELD
DDDNLLDEENDPILRALRNENS
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mRNA from alignment at Chr_1-CM003603.1:1516279..1519401-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883; organism=Cajanus cajan; type=mRNA; length=3123bp; location=Sequence derived from: Chr_1-CM003603.1:1516279..1519401- (Cajanus cajan
ATGTCGTTCGCTTCCTCATTCTCGCTGCTCCGCCACCGCGCGGCGGCGTC TTCATCCGGCGTCCCTCTCTTGCGCCGCTTCCGCTTCCTCCCAACCGCTG CGAGACACCAAAACCCTAACAACCACCCCGCCGCACCGAGCAGAAACCTC CTGAAGGCGAAACAAACGCTGAAGGAGTTCTCCTCTCTCGCTCCGGTCCT CTCCCTGGAAGACGTTCCCTCTCTCACGGAGTCCCAGGCCATCGGCGTCG TGGCGGCGTCGCAGGCGAACTTCATGCGCGTCATCGTACCGGAAGACGAA CCTTCCTCTTCCGGAACGTTCCGCGGCGTGGAGCTTCTGTGCGTGGTGAG GGCGCTGCTGAAGAAGATTAAGCGCAGGGTTATGGTGGGTGACAAGGTGC TGGTTGGTTCCATCGATTGGGTGGATCGCAGGGGCATGATTGAGAATGTG TTTAATCGGAGTTCGGAGATTCTTGACCCTCCCGTTGCTAATGTTGACCA CTTGCTCGTGCTGTTCTCGCTCGAGCAGCCCAGGCCTGAGCCGTTTACAC TCACCAGGTTTCTCGTCGAAGCGGAATCCACCGGGATTCCTCTCACGCTC GCGCTCAATAAGATGGAGCTTGTGGATAAAGAGGTTCACGTTATCTGCAT TCTCTTTGTTTGATATGGGTTCTTAGTTGTTATACCAGGAAATGGTCATT AGTAGCGAAGCGAGCGAAGTCGCATTAGTCTATCAAATTAAAAAAAAATG TCAACTAAATCTTAAAATGTCACATTAGTCGCATCTTTAAGGATTTTGTT GTCCACCTACCATTCACATGCATATCACATTGATATGATATTGGGCATGA TTTTCATTCTCATTATTTTACTTTTGAATTATTAGAGTTTAGTCACATTT AATATTTCTAGATCCTTGCATTGTCATTAACTTATATCAACTAACTACTT CTTGTGCAGTGCAGGTTTATACGTTTTCATATTAATATGATTTTGTTTTT TTTGAGTTTAAATATTTTCTATTTTATTTTTTTGTTATTATCCAAAAGAC TTCTTTTCAATAGAGACTTTATGTATATTTGTAATTTCTTATTTCTTCTC TTGGTTCGGCATTGTGAAACTTTGTTTGCATTCCAACATATTTATTATCA TTATTGACATTTTGGTCTATGAATATGTCAAATTATCACTTTATTTACAT GTATATTTTAAAAAATCTGGACTTGTGTTATTGTCAATTTATACTTTAAG GACAACTTATTTGACATTTCTTAATTACAGAGACTAATATAACAATTTTT CTCAAATTTAGGGATCAAAATGACCGTGTAGAAGAATGTAAGAAAGTAAG AATATTAAATGAAATGAGTTGAGAGTTTCTTTGACAAGCTAAAAGCGATT TATGCACTTTAACTTTTTGGAGAAATTAGATGACACAACTTCTATAAAAG TTAAATGTGTAAGCTGATTTTAGCTTTCTAAAGAAGCTTAATTCATTTTA TATTCTGATTTTCTGCTCTTGTGAATACTAGTTGAGAACTTTATCTAAAG AGCATAATAGGTTGTCTTTTGTGAATGGAAGGCCTAGCCATGTTTTTTTT ATTTATTATTTTGTGAATTTGTGATTTAGCTGTGATTGTTTTCTGGTGTC AAGTAATTGGTTGCTTTTGGCTGTTGTTTCTTGTGTAGATCATTAGTTCG TGGAAGGCTAGGTTGCGCGGCTGGGGATATGAGCCAGTTTTTTGCAGCGT TGAATCTGGACATGGGCTTGATCTTCTTGCGTTCAAGTTGAGAGATCAAA CGACAGTGATTGTGGGTCCTAGTGGAGTTGGGAAATCGAGTTTGATAAAT TCCCTTAGAAGCAATCCTTCTGATGCTGCCGAAGGGGAGAATTGGTTTGA GCCTGTGGGTTTTGTTAGTTCTGTTCTTGTTTTTTTGGTAGTTTTTTATG TCTTCTCCGGTGAGTTTGATATTTGTATTACTTGTGGACGTGTTTTTCCA GATTTTGGGAAGCAAGTGGTTAGATGATCAGCGAGTTGGGGAGGTTTCCA CAAGAAGTGGTAGAGGGAAACATACTACTCGCCATGTATCTCTGCTTCCA TTATCTGGAGGGGGATTTCTTGCTGATACTCCTGGATTTAACCAGCCTAG TTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAGTTA GTAATAATTCTTTTGCATTCGAATGAATTCAGGGTTAACACAGTTTTTCC TTTTTTGATTGATGTTATATTCTTTTCCCCCTATTCAGATAAGGAAAATG CTTAGTGCCAATGAGACTGAGAAATGTTCATTTAACAATTGCTTGCATCT GGGTGAACCTGGGTGTGTTGTGAAGGGAGATTGGGAAAGATATTCATACT ATTTTCAACTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAGCTGAGG ACATTTGGAACTAAAAGAGAAGGCGATGTAAGGTAAGATGAGTTTTGTTG ATTGAAAACAACGCTTCTCAGTTAATTGAAAAGTATCGTGCTTTTATTAA AAAGAGTTCATTTCTGGGATTTTTAATTCGTTCATAAAATGAGCATTCTG AAAAGTTTGTGATTATGAGGGTTTTATACATTTTTAAAAGCTGATTCTTA TCCTTTTACATGTTAATGTAATGTATATAAATATGAATCTCCTAGCACAC TTTTTAATTTATTTATGACAATTACCTTAGATGATGACATTCTAGCCCTT GAAAGAAGCTACTAAATTGCTTAAAACTTTCTCAACATGTAATCTCATTA TCTATTGGCTTTCTTGCCCCTCAGTCTTTGCATTTAGTTCTTAACGATTA TATGATGAATGATGGAGCATAAGCCATAACTCTATTGTCATTTATTTAAC CGGGGAAATTATTGAATCAACTTCCACATCATTTTTTTGCAGGATTAAAA TGGGAGACATGGGTGTTCAGCAAGCAGAACCACGGTTGGAACCTAAAAAG CACAGGAGACAATCTCGGAAGAGGATTAACCAGTCGATTTTAGATGAATT GGATGATGACGACAATTTGCTAGATGAGGAAAATGACCCCATTTTAAGGG CGCTTAGGAATGAAAACTCTTAG
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Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1516279..1519401-

>rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883; organism=Cajanus cajan; type=CDS; length=2838bp; location=Sequence derived from: Chr_1-CM003603.1:1516279..1519401- (Cajanus cajan
ATGTCGTTCGCTTCCTCATTCTCGCTGCTCCGCCACCGCGCGGCGGCGTC
TTCATCCGGCGTCCCTCTCTTGCGCCGCTTCCGCTTCCTCCCAACCGCTG
CGAGACACCAAAACCCTAACAACCACCCCGCCGCACCGAGCAGAAACCTC
CTGAAGGCGAAACAAACGCTGAAGGAGTTCTCCTCTCTCGCTCCGGTCCT
CTCCCTGGAAGACGTTCCCTCTCTCACGGAGTCCCAGGCCATCGGCGTCG
TGGCGGCGTCGCAGGCGAACTTCATGCGCGTCATCGTACCGGAAGACGAA
CCTTCCTCTTCCGGAACGTTCCGCGGCGTGGAGCTTCTGTGCGTGGTGAG
GGCGCTGCTGAAGAAGATTAAGCGCAGGGTTATGGTGGGTGACAAGGTGC
TGGTTGGTTCCATCGATTGGGTGGATCGCAGGGGCATGATTGAGAATGTG
TTTAATCGGAGTTCGGAGATTCTTGACCCTCCCGTTGCTAATGTTGACCA
CTTGCTCGTGCTGTTCTCGCTCGAGCAGCCCAGGCCTGAGCCGTTTACAC
TCACCAGGTTTCTCGTCGAAGCGGAATCCACCGGGATTCCTCTCACGCTC
GCGCTCAATAAGATGGAGCTTGTGGATAAAGAGATGTCGTTCGCTTCCTC
ATTCTCGCTGCTCCGCCACCGCGCGGCGGCGTCTTCATCCGGCGTCCCTC
TCTTGCGCCGCTTCCGCTTCCTCCCAACCGCTGCGAGACACCAAAACCCT
AACAACCACCCCGCCGCACCGAGCAGAAACCTCCTGAAGGCGAAACAAAC
GCTGAAGGAGTTCTCCTCTCTCGCTCCGGTCCTCTCCCTGGAAGACGTTC
CCTCTCTCACGGAGTCCCAGGCCATCGGCGTCGTGGCGGCGTCGCAGGCG
AACTTCATGCGCGTCATCGTACCGGAAGACGAACCTTCCTCTTCCGGAAC
GTTCCGCGGCGTGGAGCTTCTGTGCGTGGTGAGGGCGCTGCTGAAGAAGA
TTAAGCGCAGGGTTATGGTGGGTGACAAGGTGCTGGTTGGTTCCATCGAT
TGGGTGGATCGCAGGGGCATGATTGAGAATGTGTTTAATCGGAGTTCGGA
GATTCTTGACCCTCCCGTTGCTAATGTTGACCACTTGCTCGTGCTGTTCT
CGCTCGAGCAGCCCAGGCCTGAGCCGTTTACACTCACCAGGTTTCTCGTC
GAAGCGGAATCCACCGGGATTCCTCTCACGCTCGCGCTCAATAAGATGGA
GCTTGTGGATAAAGAGATCATTAGTTCGTGGAAGGCTAGGTTGCGCGGCT
GGGGATATGAGCCAGTTTTTTGCAGCGTTGAATCTGGACATGGGCTTGAT
CTTCTTGCGTTCAAGTTGAGAGATCAAACGACAGTGATTGTGGGTCCTAG
TGGAGTTGGGAAATCGAGTTTGATAAATTCCCTTAGAAGCAATCCTTCTG
ATGCTGCCGAAGGGGAGAATTGGTTTGAGCCTATCATTAGTTCGTGGAAG
GCTAGGTTGCGCGGCTGGGGATATGAGCCAGTTTTTTGCAGCGTTGAATC
TGGACATGGGCTTGATCTTCTTGCGTTCAAGTTGAGAGATCAAACGACAG
TGATTGTGGGTCCTAGTGGAGTTGGGAAATCGAGTTTGATAAATTCCCTT
AGAAGCAATCCTTCTGATGCTGCCGAAGGGGAGAATTGGTTTGAGCCTAT
TTTGGGAAGCAAGTGGTTAGATGATCAGCGAGTTGGGGAGGTTTCCACAA
GAAGTGGTAGAGGGAAACATACTACTCGCCATGTATCTCTGCTTCCATTA
TCTGGAGGGGGATTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTT
ATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATTTTGG
GAAGCAAGTGGTTAGATGATCAGCGAGTTGGGGAGGTTTCCACAAGAAGT
GGTAGAGGGAAACATACTACTCGCCATGTATCTCTGCTTCCATTATCTGG
AGGGGGATTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGA
AAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATAAGGAAAATG
CTTAGTGCCAATGAGACTGAGAAATGTTCATTTAACAATTGCTTGCATCT
GGGTGAACCTGGGTGTGTTGTGAAGGGAGATTGGGAAAGATATTCATACT
ATTTTCAACTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAGCTGAGG
ACATTTGGAACTAAAAGAGAAGGCGATGTAAGATAAGGAAAATGCTTAGT
GCCAATGAGACTGAGAAATGTTCATTTAACAATTGCTTGCATCTGGGTGA
ACCTGGGTGTGTTGTGAAGGGAGATTGGGAAAGATATTCATACTATTTTC
AACTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAGCTGAGGACATTT
GGAACTAAAAGAGAAGGCGATGTAAGGATTAAAATGGGAGACATGGGTGT
TCAGCAAGCAGAACCACGGTTGGAACCTAAAAAGCACAGGAGACAATCTC
GGAAGAGGATTAACCAGTCGATTTTAGATGAATTGGATGATGACGACAAT
TTGCTAGATGAGGAAAATGACCCCATTTTAAGGGCGCTTAGGAATGAAAA
CTCTTAGGATTAAAATGGGAGACATGGGTGTTCAGCAAGCAGAACCACGG
TTGGAACCTAAAAAGCACAGGAGACAATCTCGGAAGAGGATTAACCAGTC
GATTTTAGATGAATTGGATGATGACGACAATTTGCTAGATGAGGAAAATG
ACCCCATTTTAAGGGCGCTTAGGAATGAAAACTCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR010914RsgA_GTPase_dom
IPR004881Ribosome_biogen_GTPase_RsgA
IPR030378G_CP_dom
IPR027417P-loop_NTPase
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity