rna-KK1_019883
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA1_ARATH (Small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=rsgA PE=2 SV=1) HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0 Identity = 312/435 (71.72%), Postives = 356/435 (81.84%), Query Frame = 1 Query: 148 LLKAKQTLKEFSSLAPVLSL-EDVPSLTESQAIGVVAASQANFMRVIV--------PEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDA-AEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQSIXXXX---XXXXXXXXXXXXPILRALRNEN 1413 +L+AK K +SS + E PSL ESQAIG VA +QANFMRVIV +D+ SS T GVELLCVVRA+LKKI+RRV+VGDKVLVGSIDWVDRRGMIENVF+R SEILDPPVANVDHLLVLFSL+QP+ EPFTLTRFLVEAEST IPLTLALNK EL+ +E + +WK RLRGW YEP+FCSV + GLD +AF LRDQT+VIVGPSGVGKSSLIN LRSN E ENWFEP+LG+KW DDQRVGEVS+RSGRGKHTTR+VSLLP+S GG+LADTPGFNQPSLLKVTK SLA FPEIR M+ E+EKC F +CLH+GEPGCVVKGDWERY YY QLLDEIRIREEFQLRTFGTKRE DVR K+GDMGV+ AEPRL PKKHRR+SRK+ Q+++ EL +D+D+ L ENDPI++A+ NEN Sbjct: 1 MLRAKHIGKNYSSSLSPVLSPEHKPSLLESQAIGTVATAQANFMRVIVQDVANSVTSDDDNDSSKT--GVELLCVVRAVLKKIRRRVLVGDKVLVGSIDWVDRRGMIENVFHRRSEILDPPVANVDHLLVLFSLDQPKLEPFTLTRFLVEAESTRIPLTLALNKTELISEEELETWKIRLRGWNYEPLFCSVGTKDGLDDIAFVLRDQTSVIVGPSGVGKSSLINVLRSNHGGGVVEDENWFEPMLGNKWFDDQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTPGFNQPSLLKVTKHSLAHCFPEIRNMI---ESEKCGFRDCLHIGEPGCVVKGDWERYPYYLQLLDEIRIREEFQLRTFGTKREDDVRYKVGDMGVKHAEPRLMPKKHRRESRKKTKQTMISELDEFEDEDSDLYIENDPIVQAIENEN 430
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA2_ARATH (Small ribosomal subunit biogenesis GTPase RsgA 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g67460 PE=2 SV=2) HSP 1 Score: 290.041 bits (741), Expect = 3.445e-94 Identity = 156/267 (58.43%), Postives = 195/267 (73.03%), Query Frame = 1 Query: 58 GVPLLRRFRFLPTAARHQNPNNHPAAPSRNLLKAKQTLKEFSSLAPVLSLEDVPSLTESQAIGVVAASQANFMRVIVPEDEPSSSGTFR--GVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPI 852 G+ + R F FL +A R +NPN ++N K L+ F LAPVL L++ P+L E QAIG +A + A++MRVIV + S +G GVELLCVVR LLKKI R V+VGDKVLV +DWVDRR I NVF+R SE+LDPPVANVDHL++LFSL+QP+ +PFTLTRFLVEAES GI +T+ALNK ELV +E + SWK RLR W YEP+FCSV + G+D +AF LR+QT+VIVGPSGVGKSSLIN LRS+ + E F+P+ Sbjct: 27 GLRIRRSFYFL-SAIRQENPN-----VTKNPHPNKTILRSF--LAPVLPLDEKPNLVELQAIGTIATALADYMRVIVQDVPESDNGEDDKIGVELLCVVRKLLKKIGRTVLVGDKVLVDKVDWVDRRAKIINVFDRVSEVLDPPVANVDHLVILFSLDQPKIDPFTLTRFLVEAESIGIRITVALNKCELVTQEEVESWKIRLRSWNYEPLFCSVGTKVGIDEIAFNLRNQTSVIVGPSGVGKSSLINILRSSYGGDIKHEEVFKPV 285
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_ANAVT (Small ribosomal subunit biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rsgA PE=3 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 1.847e-90 Identity = 162/379 (42.74%), Postives = 216/379 (56.99%), Query Frame = 1 Query: 223 LTESQAIGVVAASQANFMRVIVPED--EPSSSGTFRGVEL------------LCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRK 1317 T Q +G V A QANF +V + +D EP S G V L LC R LKKI ++VMVGD+V+V DW RG I V +R +++ PP+AN D +L++F++ P EP+ L+RFLV+AE+TG+ + L LNK +LV EI RL WGY+P+F SVE +D +A L ++ TV+ GPSGVGKSSLIN+L + + RVGEVS + RG+HTTRHV L L GG LADTPGFNQP + + + L FPE R+ L+ C FN+CLH EP C V+GDWERY +Y + L + I + QL E +++K G Q EP+LE KK+RR SR+ Sbjct: 4 FTTGQLLGTVVAVQANFYKVQLDQDVREPGSRGAGEEVHLDSPLPLYPLSLLLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIAEVLSRQTQLDRPPIANADQILLVFAVADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVEKQINIDQIAKYLSNKITVVAGPSGVGKSSLINALIPDI--------------------NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLA---VASCRFNDCLHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-ESTLKLKTKGKGQSQYEPKLESKKYRRTSRR 356
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_MICAN (Small ribosomal subunit biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rsgA PE=3 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 3.316e-87 Identity = 151/363 (41.60%), Postives = 213/363 (58.68%), Query Frame = 1 Query: 244 GVVAASQANFMRVIVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQS 1332 G V A QANF +V + G LLC RA L+KI + VMVGD+V V ++ D++G I V RS+EI P VAN++ +L++F+L +P +P+ ++RFLV+AESTG+ + + +NK++L + E I W RL GWGY P F SVE G + L +L + T++ GPSGVGKSSLIN L +QRVG+VS + +G+HTTRHV L L G LAD+PGFNQP + + L FPE+R L+ C FN+C H EP CVV+GDWERY +Y + L+E RE+ +T + +E +++K+ + G + EP+L KK+RR SR+ NQ Sbjct: 11 GTVVAVQANFYQVRL-------DSAVMGENLLCTRRARLQKIGQSVMVGDRVRVEEANFGDQQGAIAEVLPRSTEIDRPAVANIEQILLVFALAEPVLDPWLISRFLVKAESTGLEIAVCVNKIDLGEPEQIEVWGDRLAGWGYRPFFVSVEKNRGFEALLAQLNHKITLLAGPSGVGKSSLINCLIPEI--------------------NQRVGDVSGKLQKGRHTTRHVQLFALPNRGLLADSPGFNQPD-INCLPEELTFYFPEVRARLALG---NCQFNDCTHRREPNCVVRGDWERYQHYLEFLEEAIAREQSLQKT--STKESSLKLKIKEAGQETYEPKLANKKYRRPSRRGKNQD 340
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA1_NOSS1 (Small ribosomal subunit biogenesis GTPase RsgA 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rsgA1 PE=3 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 1.122e-86 Identity = 160/379 (42.22%), Postives = 216/379 (56.99%), Query Frame = 1 Query: 223 LTESQAIGVVAASQANFMRVIVPED--EPSSSGTFRGVEL------------LCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKHRRQSRK 1317 T Q +G V A QANF +V + ++ E S G V L LC R LKKI ++VMVGD+V+V DW RG I +V +R +++ PP+AN D +L++F++ P EP+ L+RFLV+AE+TG+ + L LNK +LV EI RL WGY+P+F SVE+ +D +A L ++ TV+ GPSGVGKSSLIN+L N + RVGEVS + RG+HTTRHV L L GG LADTPGFNQP + + + L FPE R+ L+ C FN+C H EP C V+GDWERY +Y + L + I + QL E +++K G Q EP+LE KK+RR SR+ Sbjct: 4 FTTGQLLGTVVAVQANFYKVQLDQEVREQGSRGAGEEVHLDSPLPLCPLSLLLCTRRTRLKKIGQQVMVGDRVVVEEPDWAGGRGAIADVLSRQTQLDRPPIANADQILLVFAVADPPLEPYQLSRFLVKAETTGLDVVLCLNKSDLVSPEIQQQISDRLLAWGYQPLFISVENQINIDQIAKYLSNKITVVAGPSGVGKSSLINALIPNI--------------------NLRVGEVSGKLARGRHTTRHVELFELPNGGLLADTPGFNQPD-VDCSPEELVHYFPEARERLA---IASCRFNDCSHRDEPDCAVRGDWERYEHYLEFLADA-IARQTQLYQQADP-ESTLKLKTKGKGQSQYEPKLESKKYRRTSRR 356
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_THEEB (Small ribosomal subunit biogenesis GTPase RsgA OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rsgA PE=3 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.285e-73 Identity = 145/357 (40.62%), Postives = 197/357 (55.18%), Query Frame = 1 Query: 232 SQAIGVVAASQANFMRVIVPEDEPSSSGTFRGVE-LLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRIKMGDMGVQQAEPRLEPKKH 1299 S +G+V A QAN+ RV + EPS+ GVE LLCV RA LKK+ ++V VGD V+V DW +RG I + R +++ P +ANVD +L+LF+L P + +TRFL+ AE + + + K +LV + W+ RL+ WGY S+ G L L ++ TV+ GPSGVGKSSLI L +D RVG VS RG+HTTRHV L PL+ GG++ADTPGFNQP L +Q LA FPEIR+ LS ++ C F+NC H EPGC V+G+WERY Y + L ++ E + V+ K G Q+ EP L+ KK+ Sbjct: 2 SHLVGLVRAVQANYYRVRL--REPSN-----GVEELLCVRRARLKKMGQQVCVGDWVVVSHPDWPGQRGAIAEILPRRNQLSRPAIANVDQILLLFALADPPADVHPITRFLLTAEGLNVEIQVVFTKADLVSPQEQQQWRDRLQQWGYRCHVLSLTQGIAWQALRPHLANKITVVCGPSGVGKSSLIRHLTPR--------------------EDIRVGAVSDHWHRGRHTTRHVELFPLAEGGWIADTPGFNQPELPPDPRQ-LAAAFPEIRQRLSQDQ---CLFDNCRHDQEPGCCVRGNWERYPLYIEYLHQL---ETIASAEPSLAKVPLVKAKSDRQGQQRLEPLLDAKKY 324
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_SYNY3 (Small ribosomal subunit biogenesis GTPase RsgA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsgA PE=3 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 9.332e-73 Identity = 150/392 (38.27%), Postives = 209/392 (53.32%), Query Frame = 1 Query: 223 LTESQAIGVVAASQANFMRVIVPEDEPSSSGTFRGVE---LLCVVRALLKKIKRRVMVGDKVLV--------------GSIDWVDR--RGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRDQTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGD--VRIKMGDMGVQQAEPRLEPKKHRRQSRKRINQSI 1335 +T++ G V A QAN+ V R V LLC R LKK+ ++VMVGD+V V + V G I V+ R + + PPVAN + + ++F+L P E + L+RFLV+AE+TG+ ++L NK +LV + + W RL WGY P+ SVE+ G++ L KLR + +++ GPSGVGKSSLIN L + G +Q+V VS + +G+HTTRHV L L GG LADTPGFNQP L V L FPE R+ L+ E C F +CLH GEP C V DWERY +Y L+E+ ++ + RE D ++ K G G + EP+LE KK+RR SR++ +Q + Sbjct: 1 MTKATDEGTVIAVQANYYWV-----------RLRNVTSQPLLCTRRTRLKKVGQKVMVGDQVRVELPPSLLLHGRSNTAPVPMVAEGDLGAIAKVYPRRTVLERPPVANAEQICLVFALTDPPLEEWQLSRFLVQAEATGLEISLCFNKQDLVQETDVKFWGDRLAAWGYAPIIISVENRWGVEKLQEKLRSRISLMAGPSGVGKSSLINLL----------------VPGV----EQQVKNVSGKLRKGRHTTRHVELFDLPHGGLLADTPGFNQPD-LAVEPAQLIHLFPEARQQLTGQE---CFFKDCLHRGEPDCAVGQDWERYEHYLTFLEEVLAQQNPE-----NSRETDTGLKTKTGSDGQEYDEPKLETKKYRRHSRRQEHQEL 352
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_PROMA (Small ribosomal subunit biogenesis GTPase RsgA OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=rsgA PE=3 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.490e-62 Identity = 121/319 (37.93%), Postives = 175/319 (54.86%), Query Frame = 1 Query: 244 GVVAASQANFMRV------IVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRD-QTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEI 1179 G+V A +AN+ V ++PE G LLC R+ L V VGD VL+ +IDW G+I V R + I PPVANV ++++ SL P + ++RFL++AE TG+ +T+ L K +L+D++I+ + +L+ WGY+P+ S+ +G G+ L+ +L+ + V+ GPSGVGKSSLIN L S +G++S + RG+HTTRHV L + F+ADTPGFN+P Q + Q FPE+R L +KC F NC+HL EP C + DWERYS Y L E+ Sbjct: 11 GIVLALKANYYIVQIDTINLIPELFKKKIGD-HNFRLLCTKRSRLSYKGHSVSVGDFVLIEAIDWTAETGVISFVEPRKNLITRPPVANVTDVIIVVSLLDPSFDLNQVSRFLMKAEETGLKVTIVLTKRDLIDEKILEKYDKKLQTWGYQPIPISIVNGEGIQKLSARLKSMKLGVLCGPSGVGKSSLINYLLPKISIP--------------------IGKLSKKLKRGRHTTRHVELFSIYSDSFIADTPGFNKPEFYTEPSQ-VPQLFPELRSQLL---IKKCKFRNCMHLNEPDCAISRDWERYSNYKNFLQEM 304
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_SYNPX (Small ribosomal subunit biogenesis GTPase RsgA OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rsgA PE=3 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.026e-57 Identity = 123/317 (38.80%), Postives = 177/317 (55.84%), Query Frame = 1 Query: 232 SQAIGVVAASQANFMRVIVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRD-QTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDEI 1179 S+A+G+V A QAN++ V + D+ G R LLC R L V VGD+V V +ID V R ++ V R S + P VANV ++V +++QP +P +RFL+ AE TG+P+ L L K +L+++ + RL GWGY+ + S ++G G+++L+ +L+D + V+ GPSGVGKSS++N L + + RVG VS R RG+HTTRHV L P++ G +ADTPGFN+P L L FPE+R LS C F +CLH EPGC + +WER+ +Y L E Sbjct: 2 SEAVGIVVALQANYLEVEL--DQAPEQGLSR---LLCTRRTRLSHRGETVHVGDRVRVEAIDPVQARAVVSGVEPRCSWLTRPQVANVSLVVVALAVDQPAFDPDQASRFLLTAERTGLPVQLLLTKGDLMEEHQRFALVERLMGWGYDSLVVSSQTGEGVEVLSQRLKDTELAVLCGPSGVGKSSVLNCLMPHLA--------------------LRVGAVSGRLQRGRHTTRHVELFPIAPGSRVADTPGFNRPDLPD-DPSELGMLFPELRVQLSP---WPCRFRDCLHRQEPGCGINREWERFEFYKDALQEC 289
BLAST of rna-KK1_019883 vs. DB:Swiss
Match: RSGA_SYNSC (Small ribosomal subunit biogenesis GTPase RsgA OS=Synechococcus sp. (strain CC9605) OX=110662 GN=rsgA PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 5.012e-57 Identity = 131/319 (41.07%), Postives = 169/319 (52.98%), Query Frame = 1 Query: 232 SQAIGVVAASQANFMRV---IVPEDEPSSSGTFRGVELLCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFNRSSEILDPPVANVDHLLVLFSLEQPRPEPFTLTRFLVEAESTGIPLTLALNKMELVDKEIISSWKARLRGWGYEPVFCSVESGHGLDLLAFKLRD-QTTVIVGPSGVGKSSLINSLRSNPSDAAEGENWFEPILGSKWLDDQRVGEVSTRSGRGKHTTRHVSLLPLSGGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCVVKGDWERYSYYFQLLDE 1176 S A G+V A QAN++ V + P+ P LLC R L V VGD+V V +ID R ++ V R S + PPVANV + V+ ++EQP +P +RFL+ AE TG+ + L L K +L+ + RL+GWGY+P+ S +G G+D L +L Q +V+ GPSGVGKSSL+N L P L R VS R RG+HTTRHV L PL +ADTPGFN+P L + Q L FPE+RK L + C F +CLH GEPGC V DWERYS Y L E Sbjct: 7 SVASGMVVALQANYLEVELDVAPDGCPG--------RLLCTRRTRLSHRGEAVYVGDRVRVEAIDPGQGRAVVAEVEPRHSFLTRPPVANVSLVAVVLAVEQPSFDPDQASRFLLTAERTGLEVILLLTKTDLLSAAALERLVTRLQGWGYDPLAFSSAAGTGIDALRQRLAGAQLSVLCGPSGVGKSSLLNQL--------------CPDL------QLRTAAVSGRLQRGRHTTRHVELFPLGPSARVADTPGFNRPDLPE-DPQELGVLFPELRKQL---DPWPCRFRDCLHRGEPGCGVSTDWERYSLYEAALIE 293 The following BLAST results are available for this feature:
BLAST of rna-KK1_019883 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883; organism=Cajanus cajan; type=mRNA; length=1419bpback to top protein sequence of rna-KK1_019883_Cc_Asha_v1.0 >rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=472bpback to top mRNA from alignment at Chr_1-CM003603.1:1516279..1519401- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883; organism=Cajanus cajan; type=mRNA; length=3123bp; location=Sequence derived from: Chr_1-CM003603.1:1516279..1519401- (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_1-CM003603.1:1516279..1519401- >rna-KK1_019883_Cc_Asha_v1.0 ID=rna-KK1_019883_Cc_Asha_v1.0; Name=rna-KK1_019883; organism=Cajanus cajan; type=CDS; length=2838bp; location=Sequence derived from: Chr_1-CM003603.1:1516279..1519401- (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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