rna-KK1_004585

Transcript Overview
Namerna-KK1_004585
Unique Namerna-KK1_004585_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length171
ProductNOI-like protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_11-CM003613.1supercontigChr_11-CM003613.1:48390386..48390556 +Cajanus cajan Asha genome v1.0n/a
Chr_11-CM003613.1supercontigChr_11-CM003613.1:48390386..48390556 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0470Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR308Pisum sativum Cameor genome v1aPisum sativum
ccpsR363Pisum sativum Cameor genome v1aPisum sativum
ccpsR371Pisum sativum Cameor genome v1aPisum sativum
ccccL028Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0524Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccpvR0587Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0543Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0576Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anccL0059Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0283Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0544Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0734Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL1042Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cctifR0382Vicia faba cv. Tiffany genome v1.0Vicia faba
cctifR0469Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR0391Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvfhR0482Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0409Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvrvR0495Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvssR0428Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvuaR0457Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0509Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR0488Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccvssR0493Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0069Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0988Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0214Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0441Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0074Cicer arietinum
carccL1054Cicer arietinum
ccccaR0531Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0659Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0497Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0613Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr06.1630Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_027330841.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_05G00731.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va09G054760.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_022787164.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg39093.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.1g367480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.006G144600.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun06g156400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Hedin2.R1.1g447920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_19460.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_004585gene-KK1_004585_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004585rna-KK1_004585_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_004585_Cc_Asha_v1.0rna-KK1_004585_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004585_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48390386..48390556rna-KK1_004585_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48390386..48390556Cajanus cajanexon
rna-KK1_004585_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48390386..48390556rna-KK1_004585_Cc_Asha_v1.0-exon-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48390386..48390556Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_004585_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48390386..48390556rna-KK1_004585_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571082112:48390386..48390556Cajanus cajanCDS
rna-KK1_004585_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48390386..48390556rna-KK1_004585_Cc_Asha_v1.0-CDS-Chr_11-CM003613.1_Cc_Asha_v1.0-1571847872:48390386..48390556Cajanus cajanCDS


Homology
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BLAST of rna-KK1_004585 vs. DB:Swiss
Match: NOIL_ELAOL (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.019e-8
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    7 SHVPKFCNWDTDNIPYAVYFDNARNKR----PLINPNDPDENPEGF 132
            +HVPKF NWD +NI Y  YF+     +     + NPNDP+ENP+ F
Sbjct:    5 AHVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAF 50
The following BLAST results are available for this feature:
BLAST of rna-KK1_004585 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
NOIL_ELAOL1.019e-847.83NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 ... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_004585_Cc_Asha_v1.0 ID=rna-KK1_004585_Cc_Asha_v1.0; Name=rna-KK1_004585; organism=Cajanus cajan; type=mRNA; length=171bp
CAGCATTCTCATGTCCCAAAGTTTTGTAATTGGGATACTGATAACATCCC
ATACGCAGTATATTTTGATAACGCACGCAATAAAAGGCCCCTTATAAATC
CGAACGACCCAGATGAAAATCCAGAGGGCTTCAATCTATGCATAAGAGGA
GTTGAAAAAACAAAAAAGTGA
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protein sequence of rna-KK1_004585_Cc_Asha_v1.0

>rna-KK1_004585_Cc_Asha_v1.0 ID=rna-KK1_004585_Cc_Asha_v1.0; Name=rna-KK1_004585_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=56bp
QHSHVPKFCNWDTDNIPYAVYFDNARNKRPLINPNDPDENPEGFNLCIRG
VEKTKK
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mRNA from alignment at Chr_11-CM003613.1:48390386..48390556+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_004585_Cc_Asha_v1.0 ID=rna-KK1_004585_Cc_Asha_v1.0; Name=rna-KK1_004585; organism=Cajanus cajan; type=mRNA; length=171bp; location=Sequence derived from: Chr_11-CM003613.1:48390386..48390556+ (Cajanus cajan
CAGCATTCTCATGTCCCAAAGTTTTGTAATTGGGATACTGATAACATCCC
ATACGCAGTATATTTTGATAACGCACGCAATAAAAGGCCCCTTATAAATC
CGAACGACCCAGATGAAAATCCAGAGGGCTTCAATCTATGCATAAGagga
gttgaaaaaacaaaaaagtga
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Coding sequence (CDS) from alignment at Chr_11-CM003613.1:48390386..48390556+

>rna-KK1_004585_Cc_Asha_v1.0 ID=rna-KK1_004585_Cc_Asha_v1.0; Name=rna-KK1_004585; organism=Cajanus cajan; type=CDS; length=342bp; location=Sequence derived from: Chr_11-CM003613.1:48390386..48390556+ (Cajanus cajan
CAGCATTCTCATGTCCCAAAGTTTTGTAATTGGGATACTGATAACATCCC
ATACGCAGTATATTTTGATAACGCACGCAATAAAAGGCCCCTTATAAATC
CGAACGACCCAGATGAAAATCCAGAGGGCTTCAATCTATGCATAAGagga
gttgaaaaaacaaaaaagtgaCAGCATTCTCATGTCCCAAAGTTTTGTAA
TTGGGATACTGATAACATCCCATACGCAGTATATTTTGATAACGCACGCA
ATAAAAGGCCCCTTATAAATCCGAACGACCCAGATGAAAATCCAGAGGGC
TTCAATCTATGCATAAGaggagttgaaaaaacaaaaaagtga
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