rna-KK1_004975
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_NEUCR (Pre-mRNA-splicing factor cwc-21 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cwc-21 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.498e-15 Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGVTRKPNKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEARQNLEAAATEENDGSASVSATDKKVSDTQTHQIAARKEKQMEAMKAALGI 432
M + +GL TPRGSGT+GY+Q N +P+ + + K F++ R+P+K +LEHDRKR++++K+ L DKL ++G + EI + +E R+ L A + + + K + Q H++A K K+ E ++ AL I
Sbjct: 1 MSDNVGLSTPRGSGTSGYVQRNLAHFRPRDNYQSYPPKDFDS---LKHQPRQPDKGLLEHDRKREVEVKVFELRDKLEEEGVEEDEIETRCDELRRKLLAEMERNQNSRGAPTGPRKNLKMHQVHELADAKIKESERLRQALKI 141
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: SRRM2_MOUSE (Serine/arginine repetitive matrix protein 2 OS=Mus musculus OX=10090 GN=Srrm2 PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 9.276e-15 Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGVTRKPNKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEAR-----QNLEAAATEENDGSASVSATDKKVSDTQTHQIAARKEKQMEAMKAALGIVSSEVN 450
MYNGIGL TPRGSGTNGY+Q N V+ + + + E A + ++PN +IL+H+RKR+++L+ + LE+ + +QGY + +I EK+ R +++ A EE G V T+THQ+A EK+ E ++AA GI S V+
Sbjct: 1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGAKEETPGQRPVV--------TETHQLAELNEKKNERLRAAFGISDSYVD 147
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: SRRM2_HUMAN (Serine/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 2.011e-14 Identity = 57/155 (36.77%), Postives = 92/155 (59.35%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGVTRKPNKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEAR-----QNLEAAATEENDGSASVSATDKKVSDTQTHQIAARKEKQMEAMKAALGIVSSEVN 450
MYNGIGL TPRGSGTNGY+Q N V+ + + + E + A + ++PN +IL+H+RKR+++L+ + LE+ + +QGY + +I EK+ R +++ EE G ++ + T+THQ+A EK+ E ++AA GI S V+
Sbjct: 1 MYNGIGLPTPRGSGTNGYVQRNLSLVRGRRGERPDYKGEEELRRLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGGKEETPG--------QRPAVTETHQLAELNEKKNERLRAAFGISDSYVD 147
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_GIBZE (Pre-mRNA-splicing factor CWC21 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=CWC21 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 4.227e-14 Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGVTRKPNKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEARQNLEAAATEENDGSASVSATDKKVSDTQTHQIAARKEKQMEAMKAALGI 432
M + +GL TPRGSGT+GY+Q N +KP+ A K ++ R+P+K ILEHDRKR++++K+ L DKL ++ + EI ++ +E RQ L A E N G K Q H++A K K+ E ++ AL I
Sbjct: 1 MSDNVGLNTPRGSGTSGYVQRNLAHIKPR-DYGAPYPKDLDS---LRHKQRQPDKGILEHDRKREVEVKVFDLRDKLEEEEVDEDEIDKRCDELRQKLLA---EMNLGRRG-GGPKKSFKQHQVHEMADAKIKESERLRKALKI 136
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_CRYNJ (Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CWC21 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.144e-14 Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGVT-----RKPNKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEARQNLEAAATEENDGSASVSATDKKVSDTQTHQIAARKEKQMEAMKAALGI 432
MY +GL T RGSGTNGY+ N ++ + G D V+ R P++ ILEH+RKR++++K++ L D+L ++G + +I E+ + RQ L A E G + TH +AA KE +M ++ ALG+
Sbjct: 1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQGILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKL--TAQPEQLGGRGLD----------THSLAAAKEIEMSRLQRALGV 137
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_CRYNB (Pre-mRNA-splicing factor CWC21 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CWC21 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.144e-14 Identity = 49/149 (32.89%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGVT-----RKPNKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEARQNLEAAATEENDGSASVSATDKKVSDTQTHQIAARKEKQMEAMKAALGI 432
MY +GL T RGSGTNGY+ N ++ + G D V+ R P++ ILEH+RKR++++K++ L D+L ++G + +I E+ + RQ L A E G + TH +AA KE +M ++ ALG+
Sbjct: 1 MYGNVGLATARGSGTNGYVTRNTAHLRIREGPPGGQPYGSGYDALLESVSKPPIHRAPDQGILEHERKRRVEVKVMELRDELEEKGMEEDDIEEECSKLRQKL--TAQPEQLGGRGLD----------THSLAAAKEIEMSRLQRALGV 137
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_USTMA (Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=CWC21 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.059e-12 Identity = 54/155 (34.84%), Postives = 79/155 (50.97%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGV---TR-KPNKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEARQNLEAAATEENDGSASVSATDKKVSDTQ-----THQIAARKEKQMEAMKAALGIVS 438
MYNGIGL+T RG+GTNGY+Q N +S K + T V TR P+ ILEH+RKR +++K + L +L D D EI E++ + R+ L A E+ + SA+ S + +T+ THQ K+ A+G+ S
Sbjct: 1 MYNGIGLKTARGTGTNGYVQRN-------LSNFEAGKKRWNKRDATDEVGSDTRLGPDAAILEHERKRAVEVKCMELRVELEDDDVADDEIEERVAQLRETLNAQLAEQTNESAASSYESGRAKETRLRHMGTHQQIQTKQHLDRRFAIAVGVES 148
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_ASPFU (Pre-mRNA-splicing factor cwc21 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=cwc21 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 8.944e-11 Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 1 MYNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVA---ENTKGFEADQGTAGV-TRKPNKEILEHDRKRQIQLKLV 213
M + +GL TPRGSGT+GY+Q N F+KP+ + G A+ + G R+P+K+ILEHDR+R +++K++
Sbjct: 1 MSSNVGLSTPRGSGTSGYVQRNYAFMKPRNAGYGAPYPPVSGANANDSSRGFKQRQPDKQILEHDRRRAVEVKVM 75
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_CANAL (Pre-mRNA-splicing factor CWC21 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CWC21 PE=3 SV=2) HSP 1 Score: 60.4622 bits (145), Expect = 2.020e-9 Identity = 46/147 (31.29%), Postives = 76/147 (51.70%), Query Frame = 1
Query: 4 YNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVA-----ENTKGF---EADQGTAGVTRKP-----NKEILEHDRKRQIQLKLVILEDKLIDQGYTDAEIAEKLEEARQNLEAAATEENDGSASVSATDKKVSDTQTHQIAARKEKQM 405
YNGIGLQ+ RGS T+G+IQ N + KISK +N K AD+ ++ E+ +H++ R+I++K + L+D+L +QG EI +++E R+ L +END + + T + +RK+KQ+
Sbjct: 3 YNGIGLQSVRGSATSGHIQKN---IANKISKPGHYESRKNQKSLMSKRADEAKQSQNKREAYKQIKSELTKHEQLRRIEVKCMDLQDELEEQGVEPDEIKARVDELRKKLNNKEFDENDAKSPTTTTPQ----------PSRKDKQL 136
BLAST of rna-KK1_004975 vs. DB:Swiss
Match: CWC21_SCHPO (Pre-mRNA-splicing factor cwf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf21 PE=1 SV=2) HSP 1 Score: 59.3066 bits (142), Expect = 2.636e-8 Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 4 YNGIGLQTPRGSGTNGYIQSNKFFVKPKISKVAENTKGFEADQGTAGVTRKPNKEILEHDRKRQIQLKLVILEDKLID----QGYTDA 255
YNGIGL TPRGSGTNGY+ N VK K +NT A R + I EH+ +RQI+ KL++ ++L++ Q TDA
Sbjct: 3 YNGIGLPTPRGSGTNGYVMRNLSHVK----KYDKNTNLQSNRNAKALEKRVQDPSISEHECRRQIESKLLLYREQLLEEVSSQHSTDA 86 The following BLAST results are available for this feature:
BLAST of rna-KK1_004975 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_004975_Cc_Asha_v1.0 ID=rna-KK1_004975_Cc_Asha_v1.0; Name=rna-KK1_004975; organism=Cajanus cajan; type=mRNA; length=1929bpback to top protein sequence of rna-KK1_004975_Cc_Asha_v1.0 >rna-KK1_004975_Cc_Asha_v1.0 ID=rna-KK1_004975_Cc_Asha_v1.0; Name=rna-KK1_004975_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=642bpback to top mRNA from alignment at Chr_2-CM003604.1:3947424..3953134+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_004975_Cc_Asha_v1.0 ID=rna-KK1_004975_Cc_Asha_v1.0; Name=rna-KK1_004975; organism=Cajanus cajan; type=mRNA; length=5711bp; location=Sequence derived from: Chr_2-CM003604.1:3947424..3953134+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Chr_2-CM003604.1:3947424..3953134+ >rna-KK1_004975_Cc_Asha_v1.0 ID=rna-KK1_004975_Cc_Asha_v1.0; Name=rna-KK1_004975; organism=Cajanus cajan; type=CDS; length=3858bp; location=Sequence derived from: Chr_2-CM003604.1:3947424..3953134+ (Cajanus cajanback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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