rna-KK1_011366

Transcript Overview
Namerna-KK1_011366
Unique Namerna-KK1_011366_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length711
ProductMitogen-activated protein kinase kinase kinase 1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_6-CM003608.1supercontigChr_6-CM003608.1:227277..227987 +Cajanus cajan Asha genome v1.0n/a
Chr_6-CM003608.1supercontigChr_6-CM003608.1:227277..227987 +Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
cccrR0935Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ccpsR859Pisum sativum Cameor genome v1aPisum sativum
ccpvR1222Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR1139Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR1206Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caccL0541Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caccL0692Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccL0424Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0501Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccL0993Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
cctifR0984Vicia faba cv. Tiffany genome v1.0Vicia faba
ccvfhR1006Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
ccvrvR0994Vigna radiata cv. VC1973A genome v6.0Vigna radiata
ccvuaR1098Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvssR1113Vicia sativa cv. Studenica genome v1.0Vicia sativa
canccL0543Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canccL0701Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjccL0989Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL1100Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carccL0581Cicer arietinum
carccL0756Cicer arietinum
ccccaR1258Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR1269Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR1229Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014645151.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Va04G060600.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_12038.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Tiffany.R1.2g157560.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.009G110100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004501094.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_02G00836.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg55659.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr09.1777Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.2g194400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-TanjilR_12563Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat5g021160.1Pisum sativum Cameor genome v1aPisum sativum
Vigun09g191900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Ca_01915Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_06790.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_011366gene-KK1_011366_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_011366rna-KK1_011366_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_011366_Cc_Asha_v1.0rna-KK1_011366_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_011366_Cc_Asha_v1.0-exon-Chr_6-CM003608.1_Cc_Asha_v1.0-1571082112:227277..227987rna-KK1_011366_Cc_Asha_v1.0-exon-Chr_6-CM003608.1_Cc_Asha_v1.0-1571082112:227277..227987Cajanus cajanexon
rna-KK1_011366_Cc_Asha_v1.0-exon-Chr_6-CM003608.1_Cc_Asha_v1.0-1571847872:227277..227987rna-KK1_011366_Cc_Asha_v1.0-exon-Chr_6-CM003608.1_Cc_Asha_v1.0-1571847872:227277..227987Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_011366_Cc_Asha_v1.0-CDS-Chr_6-CM003608.1_Cc_Asha_v1.0-1571082112:227277..227987rna-KK1_011366_Cc_Asha_v1.0-CDS-Chr_6-CM003608.1_Cc_Asha_v1.0-1571082112:227277..227987Cajanus cajanCDS
rna-KK1_011366_Cc_Asha_v1.0-CDS-Chr_6-CM003608.1_Cc_Asha_v1.0-1571847872:227277..227987rna-KK1_011366_Cc_Asha_v1.0-CDS-Chr_6-CM003608.1_Cc_Asha_v1.0-1571847872:227277..227987Cajanus cajanCDS


Homology
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BLAST of rna-KK1_011366 vs. DB:Swiss
Match: M3K1_RAT (Mitogen-activated protein kinase kinase kinase 1 OS=Rattus norvegicus OX=10116 GN=Map3k1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.188e-10
Identity = 52/174 (29.89%), Postives = 80/174 (45.98%), Query Frame = 1 
Query:  151 STFFIFGAT-GNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRL-----------LGTP---TLPEAVAGGSLRQRFHQLFFGGGSARPKIEMEEGATCPVCLEEMGKEQNLVAC-GTCRNPIHEECLMRWKRS--RGRRTASCVICRARWR 618
            ++F I G +  N Y V +    +C+C  R T C H+LFV +RV  +   D  L R+TL+  +++ L           +  P   T+ + V+  S             S+   I+ EE   CP+CL  M  E++L  C   CRN +H  C+  W     R R    C +CR++WR
Sbjct:  315 NSFLIGGDSPDNKYRVFIGPQ-NCSC-GRGTFCIHLLFVMLRVFQLEPSDPMLWRKTLKNFEVESLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNCHTLSSSSTSTSSSENSIKDEEEQMCPICLLGMLDEESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWR 486
[Close]
BLAST of rna-KK1_011366 vs. DB:Swiss
Match: M3K1_HUMAN (Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens OX=9606 GN=MAP3K1 PE=1 SV=4)

HSP 1 Score: 61.6178 bits (148), Expect = 1.085e-9
Identity = 52/174 (29.89%), Postives = 80/174 (45.98%), Query Frame = 1 
Query:  151 STFFIFGAT-GNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRL-----------LGTP---TLPEAVAGGSLRQRFHQLFFGGGSARPKIEMEEGATCPVCLEEMGKEQNLVAC-GTCRNPIHEECLMRWKRS--RGRRTASCVICRARWR 618
            ++F I G +  N Y V +    +C+C  R T C H+LFV +RV  +   D  L R+TL+  +++ L           +  P   T+ + V+  S             S+   I+ EE   CP+CL  M  E++L  C   CRN +H  C+  W     R R    C +CR++WR
Sbjct:  325 NSFLIGGDSPDNKYRVFIGPQ-NCSCA-RGTFCIHLLFVMLRVFQLEPSDPMLWRKTLKNFEVESLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNSHTLSSSSTSTSSSENSIKDEEEQMCPICLLGMLDEESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWR 496
[Close]
BLAST of rna-KK1_011366 vs. DB:Swiss
Match: M3K1_MOUSE (Mitogen-activated protein kinase kinase kinase 1 OS=Mus musculus OX=10090 GN=Map3k1 PE=1 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 3.806e-9
Identity = 51/174 (29.31%), Postives = 79/174 (45.40%), Query Frame = 1 
Query:  151 STFFIFGAT-GNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRL-----------LGTP---TLPEAVAGGSLRQRFHQLFFGGGSARPKIEMEEGATCPVCLEEMGKEQNLVAC-GTCRNPIHEECLMRWKRS--RGRRTASCVICRARWR 618
            ++F I G +  N Y V +    +C+C  R   C H+LFV +RV  +   D  L R+TL+  +++ L           +  P   T+ + V+  S             S+   I+ EE   CP+CL  M  E++L  C   CRN +H  C+  W     R R    C +CR++WR
Sbjct:  320 NSFLIGGDSPDNKYRVFIGPQ-NCSC-GRGAFCIHLLFVMLRVFQLEPSDPMLWRKTLKNFEVESLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNSHTLSSSSTSTSSSENSIKDEEEQMCPICLLGMLDEESLTVCEDGCRNKLHHHCMSIWAEECRRNREPLICPLCRSKWR 491
The following BLAST results are available for this feature:
BLAST of rna-KK1_011366 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
M3K1_RAT5.188e-1029.89Mitogen-activated protein kinase kinase kinase 1 O... [more]
M3K1_HUMAN1.085e-929.89Mitogen-activated protein kinase kinase kinase 1 O... [more]
M3K1_MOUSE3.806e-929.31Mitogen-activated protein kinase kinase kinase 1 O... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 155..202
e-value: 1.9E-8
score: 34.5
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 63..91
e-value: 1.8E-5
score: 24.2
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 63..93
score: 10.435
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 141..218
e-value: 1.0E-9
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 147..209

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_011366_Cc_Asha_v1.0 ID=rna-KK1_011366_Cc_Asha_v1.0; Name=rna-KK1_011366; organism=Cajanus cajan; type=mRNA; length=711bp
ATGAACTCTTCTGGCTCCAATTCCAATTCTCCATCAAACCATAACAATCA
TCACCACCACCACCACCCTCGGTTCAAACCAAGCCAACCCATCTCAGACC
GAATAGTCCGCGCCCTCCGCCACCGCCTCCGCCTCCTCCACCGTGCCGGC
TCCACCTTCTTCATATTTGGCGCCACCGGAAACGTGTACACGGTGACCCT
CTCCTCAACCCCCTCATGCACCTGCCCTGACCGTACCACCCCATGCAAGC
ACATCCTCTTTGTTTTCATTCGAGTTCTTGGCGTGTCCCTTGATGACGTG
TGTCTAAGGAGGAGGACCCTCCGTCCCTGCCAGCTTCAGCGCCTCCTAGG
CACGCCGACGCTGCCGGAGGCGGTGGCGGGGGGCAGCCTCCGGCAGAGGT
TTCACCAGCTGTTCTTTGGTGGAGGGTCAGCAAGGCCAAAGATAGAGATG
GAGGAGGGTGCAACGTGCCCGGTTTGCCTTGAGGAAATGGGGAAGGAGCA
AAACCTGGTGGCGTGTGGAACATGCCGTAACCCCATTCATGAAGAATGCT
TGATGAGGTGGAAGAGAAGCAGAGGAAGAAGAACGGCTAGTTGTGTGATT
TGTAGGGCGAGGTGGAGGGATAGGGTGGAGCAGGATAAGTATCTCAATCT
CTCTGCTTATGTTAGCGAGGATGATATGGGACAACCTGCGGGGGGTATCT
GCACCGGCTAA
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protein sequence of rna-KK1_011366_Cc_Asha_v1.0

>rna-KK1_011366_Cc_Asha_v1.0 ID=rna-KK1_011366_Cc_Asha_v1.0; Name=rna-KK1_011366_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=236bp
MNSSGSNSNSPSNHNNHHHHHHPRFKPSQPISDRIVRALRHRLRLLHRAG
STFFIFGATGNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDV
CLRRRTLRPCQLQRLLGTPTLPEAVAGGSLRQRFHQLFFGGGSARPKIEM
EEGATCPVCLEEMGKEQNLVACGTCRNPIHEECLMRWKRSRGRRTASCVI
CRARWRDRVEQDKYLNLSAYVSEDDMGQPAGGICTG
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mRNA from alignment at Chr_6-CM003608.1:227277..227987+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_011366_Cc_Asha_v1.0 ID=rna-KK1_011366_Cc_Asha_v1.0; Name=rna-KK1_011366; organism=Cajanus cajan; type=mRNA; length=711bp; location=Sequence derived from: Chr_6-CM003608.1:227277..227987+ (Cajanus cajan
ATGAACTCTTCTGGCTCCAATTCCAATTCTCCATCAAACCATAACAatca
tcaccaccaccaccaccctcGGTTCAAACCAAGCCAACCCATCTCAGACC
GAATAGTCCGCGCCCTCCGCCACCGCCTCCGCCTCCTCCACCGTGCCGGC
TCCACCTTCTTCATATTTGGCGCCACCGGAAACGTGTACACGGTGACCCT
CTCCTCAACCCCCTCATGCACCTGCCCTGACCGTACCACCCCATGCAAGC
ACATCCTCTTTGTTTTCATTCGAGTTCTTGGCGTGTCCCTTGATGACGTG
TGTCTAAGGAGGAGGACCCTCCGTCCCTGCCAGCTTCAGCGCCTCCTAGG
CACGCCGACGCTGCCGGAGGCGGTGGCGGGGGGCAGCCTCCGGCAGAGGT
TTCACCAGCTGTTCTTTGGTGGAGGGTCAGCAAGGCCAAAGATAGAGATG
GAGGAGGGTGCAACGTGCCCGGTTTGCCTTGAGGAAATGGGGAAGGAGCA
AAACCTGGTGGCGTGTGGAACATGCCGTAACCCCATTCATGAAGAATGCT
TGATGAGGTGGAAGAGAAGCAGAGGAAGAAGAACGGCTAGTTGTGTGATT
TGTAGGGCGAGGTGGAGGGATAGGGTGGAGCAGGATAAGTATCTCAATCT
CTCTGCTTATGTTAGCGAGGATGATATGGGACAACCTGCGGGGGGTATCT
GCACCGGCTAA
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Coding sequence (CDS) from alignment at Chr_6-CM003608.1:227277..227987+

>rna-KK1_011366_Cc_Asha_v1.0 ID=rna-KK1_011366_Cc_Asha_v1.0; Name=rna-KK1_011366; organism=Cajanus cajan; type=CDS; length=1422bp; location=Sequence derived from: Chr_6-CM003608.1:227277..227987+ (Cajanus cajan
ATGAACTCTTCTGGCTCCAATTCCAATTCTCCATCAAACCATAACAatca
tcaccaccaccaccaccctcGGTTCAAACCAAGCCAACCCATCTCAGACC
GAATAGTCCGCGCCCTCCGCCACCGCCTCCGCCTCCTCCACCGTGCCGGC
TCCACCTTCTTCATATTTGGCGCCACCGGAAACGTGTACACGGTGACCCT
CTCCTCAACCCCCTCATGCACCTGCCCTGACCGTACCACCCCATGCAAGC
ACATCCTCTTTGTTTTCATTCGAGTTCTTGGCGTGTCCCTTGATGACGTG
TGTCTAAGGAGGAGGACCCTCCGTCCCTGCCAGCTTCAGCGCCTCCTAGG
CACGCCGACGCTGCCGGAGGCGGTGGCGGGGGGCAGCCTCCGGCAGAGGT
TTCACCAGCTGTTCTTTGGTGGAGGGTCAGCAAGGCCAAAGATAGAGATG
GAGGAGGGTGCAACGTGCCCGGTTTGCCTTGAGGAAATGGGGAAGGAGCA
AAACCTGGTGGCGTGTGGAACATGCCGTAACCCCATTCATGAAGAATGCT
TGATGAGGTGGAAGAGAAGCAGAGGAAGAAGAACGGCTAGTTGTGTGATT
TGTAGGGCGAGGTGGAGGGATAGGGTGGAGCAGGATAAGTATCTCAATCT
CTCTGCTTATGTTAGCGAGGATGATATGGGACAACCTGCGGGGGGTATCT
GCACCGGCTAAATGAACTCTTCTGGCTCCAATTCCAATTCTCCATCAAAC
CATAACAatcatcaccaccaccaccaccctcGGTTCAAACCAAGCCAACC
CATCTCAGACCGAATAGTCCGCGCCCTCCGCCACCGCCTCCGCCTCCTCC
ACCGTGCCGGCTCCACCTTCTTCATATTTGGCGCCACCGGAAACGTGTAC
ACGGTGACCCTCTCCTCAACCCCCTCATGCACCTGCCCTGACCGTACCAC
CCCATGCAAGCACATCCTCTTTGTTTTCATTCGAGTTCTTGGCGTGTCCC
TTGATGACGTGTGTCTAAGGAGGAGGACCCTCCGTCCCTGCCAGCTTCAG
CGCCTCCTAGGCACGCCGACGCTGCCGGAGGCGGTGGCGGGGGGCAGCCT
CCGGCAGAGGTTTCACCAGCTGTTCTTTGGTGGAGGGTCAGCAAGGCCAA
AGATAGAGATGGAGGAGGGTGCAACGTGCCCGGTTTGCCTTGAGGAAATG
GGGAAGGAGCAAAACCTGGTGGCGTGTGGAACATGCCGTAACCCCATTCA
TGAAGAATGCTTGATGAGGTGGAAGAGAAGCAGAGGAAGAAGAACGGCTA
GTTGTGTGATTTGTAGGGCGAGGTGGAGGGATAGGGTGGAGCAGGATAAG
TATCTCAATCTCTCTGCTTATGTTAGCGAGGATGATATGGGACAACCTGC
GGGGGGTATCTGCACCGGCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR007527Znf_SWIM
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding