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Transcript Overview
Name | rna-KK1_017215 |
Unique Name | rna-KK1_017215_Cc_Asha_v1.0 |
Type | mRNA |
Organism | Cajanus cajan (pigeon pea) |
Sequence length | 828 |
Product | Putative ribonuclease H protein At1g65750 family |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-KK1_017215 | rna-KK1_017215_Cc_Asha_v1.0-protein | Cajanus cajan | polypeptide |
rna-KK1_017215_Cc_Asha_v1.0 | rna-KK1_017215_Cc_Asha_v1.0 | Cajanus cajan | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032 | rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032 | Cajanus cajan | CDS |
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854 | rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854 | Cajanus cajan | CDS |
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533 | rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533 | Cajanus cajan | CDS |
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032 | rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032 | Cajanus cajan | CDS |
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854 | rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854 | Cajanus cajan | CDS |
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533 | rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533 | Cajanus cajan | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032 | rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032 | Cajanus cajan | exon |
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854 | rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854 | Cajanus cajan | exon |
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533 | rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533 | Cajanus cajan | exon |
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032 | rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032 | Cajanus cajan | exon |
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854 | rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854 | Cajanus cajan | exon |
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533 | rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533 | Cajanus cajan | exon |
Homology
BLAST of rna-KK1_017215 vs. DB:Swiss
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 1.250e-7 Identity = 57/282 (20.21%), Postives = 111/282 (39.36%), Query Frame = 1
Query: 64 IPKKVEHKIMKIQHKFLWREENQHKKIAWISWDKIYHQNAQDGLGIKDITLFNKALLGKWRWSMFHNKKKTYEETYWNLNTEVR---GNKDEEQWFERLYQWNGM---------------------DGQKTLFWEDPWLDQEPLATIYPKIYLNSTKKQTKIHSMGH---WNDGEWNWDFKWRRNWLGKDFEQWEDLQRRLQGLRFDSYKKDYWKWLSGNIQGYTVKSTYGELLSWKVGSEEV-SFLKELWSLKIPPKAKILTWRMYFEGLPTIDNLKKRNI 825
+P+ + +++ ++ FLW + KK + W K+ + GLG++ N+AL+ K W + K + W L + + G + +W W+ DGQ+ FW D W+ +PL + L++ ++ T ++ W G WDF + + L+ R L + +D W ++V+S Y L +V + SF LW +++P + K W + + + T + +R++
Sbjct: 58 LPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEK-----NSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKPL------LELDNGERPTDCDTVVAKDLWIPGR-GWDFAKIDPYTTNNTR----LELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHL 323
The following BLAST results are available for this feature:
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR026960 | Reverse transcriptase zinc-binding domain | PFAM | PF13966 | zf-RVT | coord: 218..275 e-value: 4.6E-8 score: 33.7 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215; organism=Cajanus cajan; type=mRNA; length=828bp ATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACAATCCTAG ACGTCAATTCAAAATACCTAAGAAGGTGGAGCATAAGATAATGAAGATAC AACATAAATTTCTGTGGAGAGAGGAAAATCAACACAAGAAAATTGCTTGG ATCAGTTGGGACAAAATATACCATCAAAACGCACAAGATGGTCTAGGAAT AAAGGATATCACTTTGTTCAACAAGGCACTGCTGGGGAAATGGCGTTGGA GTATGTTCCACAACAAAAAAAAAACCTATGAGGAGACATATTGGAATCTG AATACAGAGGTACGTGGAAATAAGGATGAGGAACAATGGTTTGAAAGATT ATACCAATGGAATGGTATGGATGGTCAAAAGACTCTATTTTGGGAAGACC CATGGTTGGACCAAGAACCACTAGCAACAATCTATCCCAAAATCTATTTG AATTCTACTAAAAAACAAACCAAAATACATTCAATGGGACATTGGAATGA TGGGGAGTGGAATTGGGACTTCAAGTGGAGAAGAAACTGGTTAGGGAAGG ACTTTGAGCAGTGGGAAGATCTACAAAGGAGACTACAGGGGTTACGATTT GATAGTTATAAAAAGGACTATTGGAAATGGTTGTCAGGGAATATTCAAGG ATATACTGTGAAGTCCACCTATGGTGAATTACTATCTTGGAAAGTTGGGT CAGAAGAGGTATCTTTCCTAAAAGAGTTGTGGTCACTTAAAATCCCCCCT AAGGCAAAAATACTAACATGGAGAATGTACTTTGAGGGCCTACCAACTAT AGATAACTTGAAAAAGAGGAACATATAG back to topprotein sequence of rna-KK1_017215_Cc_Asha_v1.0 >rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=275bp MDIPFKYLGLPIGDNPRRQFKIPKKVEHKIMKIQHKFLWREENQHKKIAW ISWDKIYHQNAQDGLGIKDITLFNKALLGKWRWSMFHNKKKTYEETYWNL NTEVRGNKDEEQWFERLYQWNGMDGQKTLFWEDPWLDQEPLATIYPKIYL NSTKKQTKIHSMGHWNDGEWNWDFKWRRNWLGKDFEQWEDLQRRLQGLRF DSYKKDYWKWLSGNIQGYTVKSTYGELLSWKVGSEEVSFLKELWSLKIPP KAKILTWRMYFEGLPTIDNLKKRNI back to topmRNA from alignment at Chr_8-CM003610.1:15155016..15156032- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215; organism=Cajanus cajan; type=mRNA; length=1017bp; location=Sequence derived from: Chr_8-CM003610.1:15155016..15156032- (Cajanus cajan ATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACAATCCTAG
ACGTCAAGCTAATCATACTTAAATTTGAAAAGAAGCTTGCACTCGAGAAA
AAACAAGCTTCTATCCCTTGCTGGCAAAGTTTGCTTAATCAACTCTATTC
TCTCGTCACTTTCACTTTACATATCCTTTTCAAAATACCTAAGAAGGTGG
AGCATAAGATAATGAAGATACAACATAAATTTCTGTGGAGAGAGGAAAAT
CAACACAAGAAAATTGCTTGGATCAGTTGGGACAAAATATACCATCAAAA
CGCACAAGATGGTCTAGGAATAAAGGATATCACTTTGTTCAACAAGGCAC
TGCTGGGGAAATGGCGTTGGAGTATGTTCCACAACAAAAAAAAAACCTAT
GAGGAGACATATTGGAATCTGAATACAGAGGGTGGAGGGACCTAACGAGT
GGAGAGGATAATAACTTCCAATCATACTGATGGAAGGACTTAAGAAGAGT
ACGTGGAAATAAGGATGAGGAACAATGGTTTGAAAGATTATACCAATGGA
ATGGTATGGATGGTCAAAAGACTCTATTTTGGGAAGACCCATGGTTGGAC
CAAGAACCACTAGCAACAATCTATCCCAAAATCTATTTGAATTCTACTAA
AAAACAAACCAAAATACATTCAATGGGACATTGGAATGATGGGGAGTGGA
ATTGGGACTTCAAGTGGAGAAGAAACTGGTTAGGGAAGGACTTTGAGCAG
TGGGAAGATCTACAAAGGAGACTACAGGGGTTACGATTTGATAGTTATAA
AAAGGACTATTGGAAATGGTTGTCAGGGAATATTCAAGGATATACTGTGA
AGTCCACCTATGGTGAATTACTATCTTGGAAAGTTGGGTCAGAAGAGGTA
TCTTTCCTAAAAGAGTTGTGGTCACTTAAAATCCCCCCTAAGGCAAAAAT
ACTAACATGGAGAATGTACTTTGAGGGCCTACCAACTATAGATAACTTGA
AAAAGAGGAACATATAG back to topCoding sequence (CDS) from alignment at Chr_8-CM003610.1:15155016..15156032- >rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215; organism=Cajanus cajan; type=CDS; length=1656bp; location=Sequence derived from: Chr_8-CM003610.1:15155016..15156032- (Cajanus cajan ATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACAATCCTAG ACGTCAAATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACA ATCCTAGACGTCAATTCAAAATACCTAAGAAGGTGGAGCATAAGATAATG AAGATACAACATAAATTTCTGTGGAGAGAGGAAAATCAACACAAGAAAAT TGCTTGGATCAGTTGGGACAAAATATACCATCAAAACGCACAAGATGGTC TAGGAATAAAGGATATCACTTTGTTCAACAAGGCACTGCTGGGGAAATGG CGTTGGAGTATGTTCCACAACAAAAAAAAAACCTATGAGGAGACATATTG GAATCTGAATACAGAGGTTCAAAATACCTAAGAAGGTGGAGCATAAGATA ATGAAGATACAACATAAATTTCTGTGGAGAGAGGAAAATCAACACAAGAA AATTGCTTGGATCAGTTGGGACAAAATATACCATCAAAACGCACAAGATG GTCTAGGAATAAAGGATATCACTTTGTTCAACAAGGCACTGCTGGGGAAA TGGCGTTGGAGTATGTTCCACAACAAAAAAAAAACCTATGAGGAGACATA TTGGAATCTGAATACAGAGGTACGTGGAAATAAGGATGAGGAACAATGGT TTGAAAGATTATACCAATGGAATGGTATGGATGGTCAAAAGACTCTATTT TGGGAAGACCCATGGTTGGACCAAGAACCACTAGCAACAATCTATCCCAA AATCTATTTGAATTCTACTAAAAAACAAACCAAAATACATTCAATGGGAC ATTGGAATGATGGGGAGTGGAATTGGGACTTCAAGTGGAGAAGAAACTGG TTAGGGAAGGACTTTGAGCAGTGGGAAGATCTACAAAGGAGACTACAGGG GTTACGATTTGATAGTTATAAAAAGGACTATTGGAAATGGTTGTCAGGGA ATATTCAAGGATATACTGTGAAGTCCACCTATGGTGAATTACTATCTTGG AAAGTTGGGTCAGAAGAGGTATCTTTCCTAAAAGAGTTGTGGTCACTTAA AATCCCCCCTAAGGCAAAAATACTAACATGGAGAATGTACTTTGAGGGCC TACCAACTATAGATAACTTGAAAAAGAGGAACATATAGTACGTGGAAATA AGGATGAGGAACAATGGTTTGAAAGATTATACCAATGGAATGGTATGGAT GGTCAAAAGACTCTATTTTGGGAAGACCCATGGTTGGACCAAGAACCACT AGCAACAATCTATCCCAAAATCTATTTGAATTCTACTAAAAAACAAACCA AAATACATTCAATGGGACATTGGAATGATGGGGAGTGGAATTGGGACTTC AAGTGGAGAAGAAACTGGTTAGGGAAGGACTTTGAGCAGTGGGAAGATCT ACAAAGGAGACTACAGGGGTTACGATTTGATAGTTATAAAAAGGACTATT GGAAATGGTTGTCAGGGAATATTCAAGGATATACTGTGAAGTCCACCTAT GGTGAATTACTATCTTGGAAAGTTGGGTCAGAAGAGGTATCTTTCCTAAA AGAGTTGTGGTCACTTAAAATCCCCCCTAAGGCAAAAATACTAACATGGA GAATGTACTTTGAGGGCCTACCAACTATAGATAACTTGAAAAAGAGGAAC ATATAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR026960 | RVT-Znf |
|