rna-KK1_017215

Transcript Overview
Namerna-KK1_017215
Unique Namerna-KK1_017215_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length828
ProductPutative ribonuclease H protein At1g65750 family
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_8-CM003610.1supercontigChr_8-CM003610.1:15155016..15156032 -Cajanus cajan Asha genome v1.0n/a
Chr_8-CM003610.1supercontigChr_8-CM003610.1:15155016..15156032 -Cajanus cajan Asha genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_017215gene-KK1_017215_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_017215rna-KK1_017215_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_017215_Cc_Asha_v1.0rna-KK1_017215_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032Cajanus cajanCDS
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854Cajanus cajanCDS
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533Cajanus cajanCDS
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032Cajanus cajanCDS
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854Cajanus cajanCDS
rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533rna-KK1_017215_Cc_Asha_v1.0-CDS-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155976..15156032Cajanus cajanexon
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155602..15155854Cajanus cajanexon
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571847872:15155016..15155533Cajanus cajanexon
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155976..15156032Cajanus cajanexon
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155602..15155854Cajanus cajanexon
rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533rna-KK1_017215_Cc_Asha_v1.0-exon-Chr_8-CM003610.1_Cc_Asha_v1.0-1571082112:15155016..15155533Cajanus cajanexon


Homology
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BLAST of rna-KK1_017215 vs. DB:Swiss
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.250e-7
Identity = 57/282 (20.21%), Postives = 111/282 (39.36%), Query Frame = 1 
Query:   64 IPKKVEHKIMKIQHKFLWREENQHKKIAWISWDKIYHQNAQDGLGIKDITLFNKALLGKWRWSMFHNKKKTYEETYWNLNTEVR---GNKDEEQWFERLYQWNGM---------------------DGQKTLFWEDPWLDQEPLATIYPKIYLNSTKKQTKIHSMGH---WNDGEWNWDFKWRRNWLGKDFEQWEDLQRRLQGLRFDSYKKDYWKWLSGNIQGYTVKSTYGELLSWKVGSEEV-SFLKELWSLKIPPKAKILTWRMYFEGLPTIDNLKKRNI 825
            +P+ + +++ ++   FLW    + KK   + W K+     + GLG++     N+AL+ K  W +   K      + W L  + +   G   + +W      W+                       DGQ+  FW D W+  +PL      + L++ ++ T   ++     W  G   WDF     +   +      L+ R   L   +  +D   W       ++V+S Y  L   +V    + SF   LW +++P + K   W +  + + T +   +R++
Sbjct:   58 LPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEK-----NSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKPL------LELDNGERPTDCDTVVAKDLWIPGR-GWDFAKIDPYTTNNTR----LELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHL 323
The following BLAST results are available for this feature:
BLAST of rna-KK1_017215 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
RNHX1_ARATH1.250e-720.21Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 218..275
e-value: 4.6E-8
score: 33.7

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215; organism=Cajanus cajan; type=mRNA; length=828bp
ATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACAATCCTAG
ACGTCAATTCAAAATACCTAAGAAGGTGGAGCATAAGATAATGAAGATAC
AACATAAATTTCTGTGGAGAGAGGAAAATCAACACAAGAAAATTGCTTGG
ATCAGTTGGGACAAAATATACCATCAAAACGCACAAGATGGTCTAGGAAT
AAAGGATATCACTTTGTTCAACAAGGCACTGCTGGGGAAATGGCGTTGGA
GTATGTTCCACAACAAAAAAAAAACCTATGAGGAGACATATTGGAATCTG
AATACAGAGGTACGTGGAAATAAGGATGAGGAACAATGGTTTGAAAGATT
ATACCAATGGAATGGTATGGATGGTCAAAAGACTCTATTTTGGGAAGACC
CATGGTTGGACCAAGAACCACTAGCAACAATCTATCCCAAAATCTATTTG
AATTCTACTAAAAAACAAACCAAAATACATTCAATGGGACATTGGAATGA
TGGGGAGTGGAATTGGGACTTCAAGTGGAGAAGAAACTGGTTAGGGAAGG
ACTTTGAGCAGTGGGAAGATCTACAAAGGAGACTACAGGGGTTACGATTT
GATAGTTATAAAAAGGACTATTGGAAATGGTTGTCAGGGAATATTCAAGG
ATATACTGTGAAGTCCACCTATGGTGAATTACTATCTTGGAAAGTTGGGT
CAGAAGAGGTATCTTTCCTAAAAGAGTTGTGGTCACTTAAAATCCCCCCT
AAGGCAAAAATACTAACATGGAGAATGTACTTTGAGGGCCTACCAACTAT
AGATAACTTGAAAAAGAGGAACATATAG
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protein sequence of rna-KK1_017215_Cc_Asha_v1.0

>rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=275bp
MDIPFKYLGLPIGDNPRRQFKIPKKVEHKIMKIQHKFLWREENQHKKIAW
ISWDKIYHQNAQDGLGIKDITLFNKALLGKWRWSMFHNKKKTYEETYWNL
NTEVRGNKDEEQWFERLYQWNGMDGQKTLFWEDPWLDQEPLATIYPKIYL
NSTKKQTKIHSMGHWNDGEWNWDFKWRRNWLGKDFEQWEDLQRRLQGLRF
DSYKKDYWKWLSGNIQGYTVKSTYGELLSWKVGSEEVSFLKELWSLKIPP
KAKILTWRMYFEGLPTIDNLKKRNI
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mRNA from alignment at Chr_8-CM003610.1:15155016..15156032-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215; organism=Cajanus cajan; type=mRNA; length=1017bp; location=Sequence derived from: Chr_8-CM003610.1:15155016..15156032- (Cajanus cajan
ATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACAATCCTAG
ACGTCAAGCTAATCATACTTAAATTTGAAAAGAAGCTTGCACTCGAGAAA
AAACAAGCTTCTATCCCTTGCTGGCAAAGTTTGCTTAATCAACTCTATTC
TCTCGTCACTTTCACTTTACATATCCTTTTCAAAATACCTAAGAAGGTGG
AGCATAAGATAATGAAGATACAACATAAATTTCTGTGGAGAGAGGAAAAT
CAACACAAGAAAATTGCTTGGATCAGTTGGGACAAAATATACCATCAAAA
CGCACAAGATGGTCTAGGAATAAAGGATATCACTTTGTTCAACAAGGCAC
TGCTGGGGAAATGGCGTTGGAGTATGTTCCACAACAAAAAAAAAACCTAT
GAGGAGACATATTGGAATCTGAATACAGAGGGTGGAGGGACCTAACGAGT
GGAGAGGATAATAACTTCCAATCATACTGATGGAAGGACTTAAGAAGAGT
ACGTGGAAATAAGGATGAGGAACAATGGTTTGAAAGATTATACCAATGGA
ATGGTATGGATGGTCAAAAGACTCTATTTTGGGAAGACCCATGGTTGGAC
CAAGAACCACTAGCAACAATCTATCCCAAAATCTATTTGAATTCTACTAA
AAAACAAACCAAAATACATTCAATGGGACATTGGAATGATGGGGAGTGGA
ATTGGGACTTCAAGTGGAGAAGAAACTGGTTAGGGAAGGACTTTGAGCAG
TGGGAAGATCTACAAAGGAGACTACAGGGGTTACGATTTGATAGTTATAA
AAAGGACTATTGGAAATGGTTGTCAGGGAATATTCAAGGATATACTGTGA
AGTCCACCTATGGTGAATTACTATCTTGGAAAGTTGGGTCAGAAGAGGTA
TCTTTCCTAAAAGAGTTGTGGTCACTTAAAATCCCCCCTAAGGCAAAAAT
ACTAACATGGAGAATGTACTTTGAGGGCCTACCAACTATAGATAACTTGA
AAAAGAGGAACATATAG
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Coding sequence (CDS) from alignment at Chr_8-CM003610.1:15155016..15156032-

>rna-KK1_017215_Cc_Asha_v1.0 ID=rna-KK1_017215_Cc_Asha_v1.0; Name=rna-KK1_017215; organism=Cajanus cajan; type=CDS; length=1656bp; location=Sequence derived from: Chr_8-CM003610.1:15155016..15156032- (Cajanus cajan
ATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACAATCCTAG
ACGTCAAATGGATATACCATTTAAGTACCTAGGTCTCCCAATTGGTGACA
ATCCTAGACGTCAATTCAAAATACCTAAGAAGGTGGAGCATAAGATAATG
AAGATACAACATAAATTTCTGTGGAGAGAGGAAAATCAACACAAGAAAAT
TGCTTGGATCAGTTGGGACAAAATATACCATCAAAACGCACAAGATGGTC
TAGGAATAAAGGATATCACTTTGTTCAACAAGGCACTGCTGGGGAAATGG
CGTTGGAGTATGTTCCACAACAAAAAAAAAACCTATGAGGAGACATATTG
GAATCTGAATACAGAGGTTCAAAATACCTAAGAAGGTGGAGCATAAGATA
ATGAAGATACAACATAAATTTCTGTGGAGAGAGGAAAATCAACACAAGAA
AATTGCTTGGATCAGTTGGGACAAAATATACCATCAAAACGCACAAGATG
GTCTAGGAATAAAGGATATCACTTTGTTCAACAAGGCACTGCTGGGGAAA
TGGCGTTGGAGTATGTTCCACAACAAAAAAAAAACCTATGAGGAGACATA
TTGGAATCTGAATACAGAGGTACGTGGAAATAAGGATGAGGAACAATGGT
TTGAAAGATTATACCAATGGAATGGTATGGATGGTCAAAAGACTCTATTT
TGGGAAGACCCATGGTTGGACCAAGAACCACTAGCAACAATCTATCCCAA
AATCTATTTGAATTCTACTAAAAAACAAACCAAAATACATTCAATGGGAC
ATTGGAATGATGGGGAGTGGAATTGGGACTTCAAGTGGAGAAGAAACTGG
TTAGGGAAGGACTTTGAGCAGTGGGAAGATCTACAAAGGAGACTACAGGG
GTTACGATTTGATAGTTATAAAAAGGACTATTGGAAATGGTTGTCAGGGA
ATATTCAAGGATATACTGTGAAGTCCACCTATGGTGAATTACTATCTTGG
AAAGTTGGGTCAGAAGAGGTATCTTTCCTAAAAGAGTTGTGGTCACTTAA
AATCCCCCCTAAGGCAAAAATACTAACATGGAGAATGTACTTTGAGGGCC
TACCAACTATAGATAACTTGAAAAAGAGGAACATATAGTACGTGGAAATA
AGGATGAGGAACAATGGTTTGAAAGATTATACCAATGGAATGGTATGGAT
GGTCAAAAGACTCTATTTTGGGAAGACCCATGGTTGGACCAAGAACCACT
AGCAACAATCTATCCCAAAATCTATTTGAATTCTACTAAAAAACAAACCA
AAATACATTCAATGGGACATTGGAATGATGGGGAGTGGAATTGGGACTTC
AAGTGGAGAAGAAACTGGTTAGGGAAGGACTTTGAGCAGTGGGAAGATCT
ACAAAGGAGACTACAGGGGTTACGATTTGATAGTTATAAAAAGGACTATT
GGAAATGGTTGTCAGGGAATATTCAAGGATATACTGTGAAGTCCACCTAT
GGTGAATTACTATCTTGGAAAGTTGGGTCAGAAGAGGTATCTTTCCTAAA
AGAGTTGTGGTCACTTAAAATCCCCCCTAAGGCAAAAATACTAACATGGA
GAATGTACTTTGAGGGCCTACCAACTATAGATAACTTGAAAAAGAGGAAC
ATATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf