rna-KK1_036698

Transcript Overview
Namerna-KK1_036698
Unique Namerna-KK1_036698_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length231
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_036698gene-KK1_036698_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_036698rna-KK1_036698_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_036698_Cc_Asha_v1.0rna-KK1_036698_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_036698_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:227115..227345rna-KK1_036698_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:227115..227345Cajanus cajanexon
rna-KK1_036698_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:227115..227345rna-KK1_036698_Cc_Asha_v1.0-exon-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:227115..227345Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_036698_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:227115..227345rna-KK1_036698_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571082112:227115..227345Cajanus cajanCDS
rna-KK1_036698_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:227115..227345rna-KK1_036698_Cc_Asha_v1.0-CDS-Scaffold128880-KQ483745.1_Cc_Asha_v1.0-1571847872:227115..227345Cajanus cajanCDS


Homology
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BLAST of rna-KK1_036698 vs. DB:Swiss
Match: POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.215e-12
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    1 MLACKPADTPIEMNHSLAIYPDQIEMDKHRYQRLVGKLIYLSHTRPGIAYSVSIVSRFVHSPSEEHMTTIYRIL 222
            M+  KP  TP+  +  L++Y      D   Y+ +VG L YL+ TRP I+Y+V+ +S+F+H P+EEH+  + RIL
Sbjct: 1215 MITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRIL 1288
[Close]
BLAST of rna-KK1_036698 vs. DB:Swiss
Match: POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.911e-9
Identity = 25/74 (33.78%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:    1 MLACKPADTPIEMNHSLAIYPDQIEMDKHRYQRLVGKLIYLSHTRPGIAYSVSIVSRFVHSPSEEHMTTIYRIL 222
            ML  KP  TP+  +  L ++      D   Y+ +VG L YL+ TRP ++Y+V+ +S+++H P+++H   + R+L
Sbjct: 1198 MLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVL 1271
[Close]
BLAST of rna-KK1_036698 vs. DB:Swiss
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 6.221e-8
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    1 MLACKPADTPI--EMNHSL--AIYPDQIEMDKHRYQRLVGKLIYLSHTRPGIAYSVSIVSRFVHSPSEEHMTTIYRIL 222
            ML CKP  TP+  ++N S+  A YPD  +     ++ +VG L YL+ TRP I+Y+V+IV + +H P+      + R+L
Sbjct:   71 MLDCKPMSTPLPLKLNSSVSTAKYPDPSD-----FRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVL 143
The following BLAST results are available for this feature:
BLAST of rna-KK1_036698 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
POLR1_ARATH3.215e-1240.54Retrovirus-related Pol polyprotein from transposon... [more]
POLR2_ARATH1.911e-933.78Retrovirus-related Pol polyprotein from transposon... [more]
M810_ARATH6.221e-838.46Uncharacterized mitochondrial protein AtMg00810 OS... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_036698_Cc_Asha_v1.0 ID=rna-KK1_036698_Cc_Asha_v1.0; Name=rna-KK1_036698; organism=Cajanus cajan; type=mRNA; length=231bp
ATGCTGGCTTGCAAGCCAGCTGATACTCCAATTGAAATGAATCATTCTCT
TGCTATATATCCAGACCAGATTGAGATGGACAAGCATAGATACCAGAGGT
TAGTAGGGAAGTTAATTTATTTATCTCACACTAGACCTGGCATTGCCTAT
TCTGTGAGCATTGTAAGTAGGTTCGTGCATTCTCCTAGTGAGGAACATAT
GACAACAATATACCGTATCTTAGATACCTGA
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protein sequence of rna-KK1_036698_Cc_Asha_v1.0

>rna-KK1_036698_Cc_Asha_v1.0 ID=rna-KK1_036698_Cc_Asha_v1.0; Name=rna-KK1_036698_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=76bp
MLACKPADTPIEMNHSLAIYPDQIEMDKHRYQRLVGKLIYLSHTRPGIAY
SVSIVSRFVHSPSEEHMTTIYRILDT
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mRNA from alignment at Scaffold128880-KQ483745.1:227115..227345+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_036698_Cc_Asha_v1.0 ID=rna-KK1_036698_Cc_Asha_v1.0; Name=rna-KK1_036698; organism=Cajanus cajan; type=mRNA; length=231bp; location=Sequence derived from: Scaffold128880-KQ483745.1:227115..227345+ (Cajanus cajan
ATGCTGGCTTGCAAGCCAGCTGATACTCCAATTGAAATGAATCATTCTCT
TGCTATATATCCAGACCAGATTGAGATGGACAAGCATAGATACCAGAGGT
TAGTAGggaagttaatttatttatctcacACTAGACCTGGCATTGCCTAT
TCTGTGAGCATTGTAAGTAGGTTCGTGCATTCTCCTAGTGAGGAACATAT
GACAACAATATACCGTATCTTAGATACCTGA
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Coding sequence (CDS) from alignment at Scaffold128880-KQ483745.1:227115..227345+

>rna-KK1_036698_Cc_Asha_v1.0 ID=rna-KK1_036698_Cc_Asha_v1.0; Name=rna-KK1_036698; organism=Cajanus cajan; type=CDS; length=462bp; location=Sequence derived from: Scaffold128880-KQ483745.1:227115..227345+ (Cajanus cajan
ATGCTGGCTTGCAAGCCAGCTGATACTCCAATTGAAATGAATCATTCTCT
TGCTATATATCCAGACCAGATTGAGATGGACAAGCATAGATACCAGAGGT
TAGTAGggaagttaatttatttatctcacACTAGACCTGGCATTGCCTAT
TCTGTGAGCATTGTAAGTAGGTTCGTGCATTCTCCTAGTGAGGAACATAT
GACAACAATATACCGTATCTTAGATACCTGAATGCTGGCTTGCAAGCCAG
CTGATACTCCAATTGAAATGAATCATTCTCTTGCTATATATCCAGACCAG
ATTGAGATGGACAAGCATAGATACCAGAGGTTAGTAGggaagttaattta
tttatctcacACTAGACCTGGCATTGCCTATTCTGTGAGCATTGTAAGTA
GGTTCGTGCATTCTCCTAGTGAGGAACATATGACAACAATATACCGTATC
TTAGATACCTGA
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