rna-KK1_034289

Transcript Overview
Namerna-KK1_034289
Unique Namerna-KK1_034289_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length453
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_034289gene-KK1_034289_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034289rna-KK1_034289_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_034289_Cc_Asha_v1.0rna-KK1_034289_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034289_Cc_Asha_v1.0-CDS-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571847872:112474..112926rna-KK1_034289_Cc_Asha_v1.0-CDS-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571847872:112474..112926Cajanus cajanCDS
rna-KK1_034289_Cc_Asha_v1.0-CDS-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571082112:112474..112926rna-KK1_034289_Cc_Asha_v1.0-CDS-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571082112:112474..112926Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_034289_Cc_Asha_v1.0-exon-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571847872:112474..112926rna-KK1_034289_Cc_Asha_v1.0-exon-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571847872:112474..112926Cajanus cajanexon
rna-KK1_034289_Cc_Asha_v1.0-exon-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571082112:112474..112926rna-KK1_034289_Cc_Asha_v1.0-exon-Scaffold133489-KQ483635.1_Cc_Asha_v1.0-1571082112:112474..112926Cajanus cajanexon


Homology
[Close]
BLAST of rna-KK1_034289 vs. DB:Swiss
Match: POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.579e-12
Identity = 31/103 (30.10%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   49 QMWRNLETYFASQTKARVKQLKIQLRG-IKKTTAINQYLLEIKKIVDTLAAIGSPLDTTEHIDAIFDGLPEEYDPFVTSVLTRTEDYTVEQIEALLMAHEERL 354
            Q+W  L   +A+ +   V QL+ QL+   K T  I+ Y+  +    D LA +G P+D  E ++ + + LPEEY P +  +  +    T+ +I   L+ HE ++
Sbjct:  108 QIWETLRKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKI 210
The following BLAST results are available for this feature:
BLAST of rna-KK1_034289 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
POLR1_ARATH9.579e-1230.10Retrovirus-related Pol polyprotein from transposon... [more]
back to top
InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..124
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 9..120
e-value: 9.2E-18
score: 64.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..137

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_034289_Cc_Asha_v1.0 ID=rna-KK1_034289_Cc_Asha_v1.0; Name=rna-KK1_034289; organism=Cajanus cajan; type=mRNA; length=453bp
ATGGAGCCTCAATTCAAGGTAAGAATGGTTGGATACGAGTGGTGCCATCA
AATGTGGAGAAATCTGGAAACATACTTTGCTTCTCAAACCAAGGCCCGTG
TTAAGCAACTCAAGATTCAACTCAGAGGCATCAAGAAAACCACTGCCATC
AATCAATACCTTCTTGAAATCAAGAAGATTGTAGACACCTTGGCAGCAAT
TGGGTCACCTCTCGATACAACCGAACACATTGATGCAATCTTTGATGGAC
TGCCTGAAGAATATGATCCATTCGTGACCTCTGTCCTTACAAGAACTGAA
GACTACACTGTTGAACAAATTGAAGCGCTTCTGATGGCTCACGAAGAAAG
ATTGGAAAAACACAAACGTAGTGACAGTGCAAGCCCCCAAGTCAACCTCG
CCCAAGGAAACCTTCATGCAAGAAAACAGTACACCAATCGCCATCTTTCT
TGA
back to top

protein sequence of rna-KK1_034289_Cc_Asha_v1.0

>rna-KK1_034289_Cc_Asha_v1.0 ID=rna-KK1_034289_Cc_Asha_v1.0; Name=rna-KK1_034289_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=150bp
MEPQFKVRMVGYEWCHQMWRNLETYFASQTKARVKQLKIQLRGIKKTTAI
NQYLLEIKKIVDTLAAIGSPLDTTEHIDAIFDGLPEEYDPFVTSVLTRTE
DYTVEQIEALLMAHEERLEKHKRSDSASPQVNLAQGNLHARKQYTNRHLS
back to top

mRNA from alignment at Scaffold133489-KQ483635.1:112474..112926-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_034289_Cc_Asha_v1.0 ID=rna-KK1_034289_Cc_Asha_v1.0; Name=rna-KK1_034289; organism=Cajanus cajan; type=mRNA; length=453bp; location=Sequence derived from: Scaffold133489-KQ483635.1:112474..112926- (Cajanus cajan
ATGGAGCCTCAATTCAAGGTAAGAATGGTTGGATACGAGTGGTGCCATCA
AATGTGGAGAAATCTGGAAACATACTTTGCTTCTCAAACCAAGGCCCGTG
TTAAGCAACTCAAGATTCAACTCAGAGGCATCAAGAAAACCACTGCCATC
AATCAATACCTTCTTGAAATCAAGAAGATTGTAGACACCTTGGCAGCAAT
TGGGTCACCTCTCGATACAACCGAACACATTGATGCAATCTTTGATGGAC
TGCCTGAAGAATATGATCCATTCGTGACCTCTGTCCTTACAAGAACTGAA
GACTACACTGTTGAACAAATTGAAGCGCTTCTGATGGCTCACGAAGAAAG
ATTGGAAAAACACAAACGTAGTGACAGTGCAAGCCCCCAAGTCAACCTCG
CCCAAGGAAACCTTCATGCAAGAAAACAGTACACCAATCGCCATCTTTCT
TGA
back to top

Coding sequence (CDS) from alignment at Scaffold133489-KQ483635.1:112474..112926-

>rna-KK1_034289_Cc_Asha_v1.0 ID=rna-KK1_034289_Cc_Asha_v1.0; Name=rna-KK1_034289; organism=Cajanus cajan; type=CDS; length=906bp; location=Sequence derived from: Scaffold133489-KQ483635.1:112474..112926- (Cajanus cajan
ATGGAGCCTCAATTCAAGGTAAGAATGGTTGGATACGAGTGGTGCCATCA
AATGTGGAGAAATCTGGAAACATACTTTGCTTCTCAAACCAAGGCCCGTG
TTAAGCAACTCAAGATTCAACTCAGAGGCATCAAGAAAACCACTGCCATC
AATCAATACCTTCTTGAAATCAAGAAGATTGTAGACACCTTGGCAGCAAT
TGGGTCACCTCTCGATACAACCGAACACATTGATGCAATCTTTGATGGAC
TGCCTGAAGAATATGATCCATTCGTGACCTCTGTCCTTACAAGAACTGAA
GACTACACTGTTGAACAAATTGAAGCGCTTCTGATGGCTCACGAAGAAAG
ATTGGAAAAACACAAACGTAGTGACAGTGCAAGCCCCCAAGTCAACCTCG
CCCAAGGAAACCTTCATGCAAGAAAACAGTACACCAATCGCCATCTTTCT
TGAATGGAGCCTCAATTCAAGGTAAGAATGGTTGGATACGAGTGGTGCCA
TCAAATGTGGAGAAATCTGGAAACATACTTTGCTTCTCAAACCAAGGCCC
GTGTTAAGCAACTCAAGATTCAACTCAGAGGCATCAAGAAAACCACTGCC
ATCAATCAATACCTTCTTGAAATCAAGAAGATTGTAGACACCTTGGCAGC
AATTGGGTCACCTCTCGATACAACCGAACACATTGATGCAATCTTTGATG
GACTGCCTGAAGAATATGATCCATTCGTGACCTCTGTCCTTACAAGAACT
GAAGACTACACTGTTGAACAAATTGAAGCGCTTCTGATGGCTCACGAAGA
AAGATTGGAAAAACACAAACGTAGTGACAGTGCAAGCCCCCAAGTCAACC
TCGCCCAAGGAAACCTTCATGCAAGAAAACAGTACACCAATCGCCATCTT
TCTTGA
back to top