rna-KK1_030070

Transcript Overview
Namerna-KK1_030070
Unique Namerna-KK1_030070_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length408
ProductRetrovirus-related Pol polyprotein from transposon TNT 1-94
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_030070gene-KK1_030070_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_030070rna-KK1_030070_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_030070_Cc_Asha_v1.0rna-KK1_030070_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_030070_Cc_Asha_v1.0-CDS-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571847872:327493..327900rna-KK1_030070_Cc_Asha_v1.0-CDS-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571847872:327493..327900Cajanus cajanCDS
rna-KK1_030070_Cc_Asha_v1.0-CDS-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571082112:327493..327900rna-KK1_030070_Cc_Asha_v1.0-CDS-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571082112:327493..327900Cajanus cajanCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_030070_Cc_Asha_v1.0-exon-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571847872:327493..327900rna-KK1_030070_Cc_Asha_v1.0-exon-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571847872:327493..327900Cajanus cajanexon
rna-KK1_030070_Cc_Asha_v1.0-exon-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571082112:327493..327900rna-KK1_030070_Cc_Asha_v1.0-exon-Scaffold133937-KQ483504.1_Cc_Asha_v1.0-1571082112:327493..327900Cajanus cajanexon


Homology
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BLAST of rna-KK1_030070 vs. DB:Swiss
Match: POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.291e-24
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1 
Query:    1 MEDAKPMKIPMHPSSTLGLDEDSPDVDSTTYQGTVGSLLYLTASRPDIMFNVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFSLLGYCDADYAGDKWERKNTSG 345
            M  AKP+  PM PS  L L   +   D T Y+G VGSL YL  +RPDI + V   ++F   P E HLQA+KRIL YL GT N GI   +    SL  Y DAD+AGDK +  +T+G
Sbjct: 1215 MITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNG 1329
[Close]
BLAST of rna-KK1_030070 vs. DB:Swiss
Match: POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.372e-18
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:    1 MEDAKPMKIPMHPSSTLGLDEDSPDVDSTTYQGTVGSLLYLTASRPDIMFNVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFSLLGYCDADYAGDKWERKNTSG 345
            M  AKP+  PM  S  L L   +   D T Y+G VGSL YL  +RPD+ + V   +++   P + H  A+KR+L YL GT + GI   +    SL  Y DAD+AGD  +  +T+G
Sbjct: 1198 MLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNG 1312
[Close]
BLAST of rna-KK1_030070 vs. DB:Swiss
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.053e-14
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 1 
Query:    1 MEDAKPMKIPMHPSSTLGLD------EDSPDVDSTTYQGTVGSLLY-LTASRPDIMFNVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFSLLGYCDADYAGDKWERKNTSG 345
            M++AKP+  P+     L         E+  ++    Y   VGSL+Y +  +RPDI   V V +RF   P + H +AVK IL YL+GTT   + F  S D  L GY DAD AGD   RK+++G
Sbjct: 1075 MKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS-DPILKGYTDADMAGDIDNRKSSTG 1195
[Close]
BLAST of rna-KK1_030070 vs. DB:Swiss
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.707e-13
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 1 
Query:    1 MEDAKPMKIPMHPSSTLGLDEDSPDV---DSTTYQGTVGSLLYLTASRPDIMFNVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFSLLGYCDADYAGDKWERKNTSG 345
            M D KPM  P+     L L+         D + ++  VG+L YLT +RPDI + V +  +    P       +KR+L Y+KGT   G+  +++   ++  +CD+D+AG    R++T+G
Sbjct:   71 MLDCKPMSTPL----PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTG 184
[Close]
BLAST of rna-KK1_030070 vs. DB:Swiss
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 3.309e-11
Identity = 39/122 (31.97%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:    1 MEDAKPMKIPMHPSST----LGLDEDSPDVDSTTYQGTVGSLLYLT-ASRPDIMFNVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFS--LLGYCDADYAGDKWERKNTSG 345
            ME+   +  P+ PS      L  DED     +T  +  +G L+Y+   +RPD+   V + +R+  +      Q +KR+L YLKGT ++ + F ++  F   ++GY D+D+AG + +RK+T+G
Sbjct: 1152 MENCNAVSTPL-PSKINYELLNSDEDC----NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTG 1268
[Close]
BLAST of rna-KK1_030070 vs. DB:Swiss
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 1.893e-10
Identity = 31/91 (34.07%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:   79 DSTTYQGTVGSLLYLTAS-RPDIMFNVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFSLLGYCDADYAGDKWERKNTSGG 348
            D T YQ  VG LL+   + RPDI + V + +RF   P+ +HL++ +R+L YL  T ++ + +      +L  YCDA + G   +  +++GG
Sbjct:  179 DITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASH-GAIHDLPHSTGG 268
[Close]
BLAST of rna-KK1_030070 vs. DB:Swiss
Match: M240_ARATH (Uncharacterized mitochondrial protein AtMg00240 OS=Arabidopsis thaliana OX=3702 GN=AtMg00240 PE=4 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.821e-9
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  115 LYLTASRPDIMFNVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFSLLGYCDADYAGDKWERKNTSG 345
            +YLT +RPD+ F V   ++F    +   +QAV ++L Y+KGT   G+ +  + D  L  + D+D+A     R++ +G
Sbjct:    1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTG 77
The following BLAST results are available for this feature:
BLAST of rna-KK1_030070 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
POLR1_ARATH6.291e-2447.83Retrovirus-related Pol polyprotein from transposon... [more]
POLR2_ARATH9.372e-1840.00Retrovirus-related Pol polyprotein from transposon... [more]
POLX_TOBAC5.053e-1439.34Retrovirus-related Pol polyprotein from transposon... [more]
M810_ARATH2.707e-1331.36Uncharacterized mitochondrial protein AtMg00810 OS... [more]
COPIA_DROME3.309e-1131.97Copia protein OS=Drosophila melanogaster OX=7227 G... [more]
YCH4_YEAST1.893e-1034.07Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
M240_ARATH3.821e-932.47Uncharacterized mitochondrial protein AtMg00240 OS... [more]
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_030070_Cc_Asha_v1.0 ID=rna-KK1_030070_Cc_Asha_v1.0; Name=rna-KK1_030070; organism=Cajanus cajan; type=mRNA; length=408bp
ATGGAAGATGCAAAACCAATGAAGATTCCAATGCATCCATCTTCTACTCT
TGGTCTGGACGAAGATTCACCAGACGTAGATAGCACAACGTACCAAGGAA
CGGTAGGCTCACTCTTGTATCTAACGGCATCCAGACCTGACATTATGTTC
AACGTCTACGTCTGCGCCAGATTTCAAGTAAGACCTAAGGAGGTACATTT
ACAAGCTGTTAAACGTATTTTAACATATCTTAAAGGAACAACTAACCTAG
GAATCAACTTCTATAGAAGCCAGGATTTTTCCCTATTAGGATATTGTGAT
GCAGATTACGCAGGGGACAAATGGGAAAGAAAAAATACTAGCGGAGGATA
TCATATATATATATATATATTTCACTACATAAGAGATGTTTTATGGTTTT
TGAAGTAA
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protein sequence of rna-KK1_030070_Cc_Asha_v1.0

>rna-KK1_030070_Cc_Asha_v1.0 ID=rna-KK1_030070_Cc_Asha_v1.0; Name=rna-KK1_030070_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=135bp
MEDAKPMKIPMHPSSTLGLDEDSPDVDSTTYQGTVGSLLYLTASRPDIMF
NVYVCARFQVRPKEVHLQAVKRILTYLKGTTNLGINFYRSQDFSLLGYCD
ADYAGDKWERKNTSGGYHIYIYIFHYIRDVLWFLK
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mRNA from alignment at Scaffold133937-KQ483504.1:327493..327900-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_030070_Cc_Asha_v1.0 ID=rna-KK1_030070_Cc_Asha_v1.0; Name=rna-KK1_030070; organism=Cajanus cajan; type=mRNA; length=408bp; location=Sequence derived from: Scaffold133937-KQ483504.1:327493..327900- (Cajanus cajan
ATGGAAGATGCAAAACCAATGAAGATTCCAATGCATCCATCTTCTACTCT
TGGTCTGGACGAAGATTCACCAGACGTAGATAGCACAACGTACCAAGGAA
CGGTAGGCTCACTCTTGTATCTAACGGCATCCAGACCTGACATTATGTTC
AACGTCTACGTCTGCGCCAGATTTCAAGTAAGACCTAAGGAGGTACATTT
ACAAGCTGTTAAACGTATTTTAACATATCTTAAAGGAACAACTAACCTAG
GAATCAACTTCTATAGAAGCCAGGATTTTTCCCTATTAGGATATTGTGAT
GCAGATTACGCAGGGGACAAATGGGAAAGAAAAAATACTAGCGGAGGATA
TCATATATATATATATATATTTCACTACATAAGAGATGTTTTATGGTTTT
TGAAGTAA
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Coding sequence (CDS) from alignment at Scaffold133937-KQ483504.1:327493..327900-

>rna-KK1_030070_Cc_Asha_v1.0 ID=rna-KK1_030070_Cc_Asha_v1.0; Name=rna-KK1_030070; organism=Cajanus cajan; type=CDS; length=816bp; location=Sequence derived from: Scaffold133937-KQ483504.1:327493..327900- (Cajanus cajan
ATGGAAGATGCAAAACCAATGAAGATTCCAATGCATCCATCTTCTACTCT
TGGTCTGGACGAAGATTCACCAGACGTAGATAGCACAACGTACCAAGGAA
CGGTAGGCTCACTCTTGTATCTAACGGCATCCAGACCTGACATTATGTTC
AACGTCTACGTCTGCGCCAGATTTCAAGTAAGACCTAAGGAGGTACATTT
ACAAGCTGTTAAACGTATTTTAACATATCTTAAAGGAACAACTAACCTAG
GAATCAACTTCTATAGAAGCCAGGATTTTTCCCTATTAGGATATTGTGAT
GCAGATTACGCAGGGGACAAATGGGAAAGAAAAAATACTAGCGGAGGATA
TCATATATATATATATATATTTCACTACATAAGAGATGTTTTATGGTTTT
TGAAGTAAATGGAAGATGCAAAACCAATGAAGATTCCAATGCATCCATCT
TCTACTCTTGGTCTGGACGAAGATTCACCAGACGTAGATAGCACAACGTA
CCAAGGAACGGTAGGCTCACTCTTGTATCTAACGGCATCCAGACCTGACA
TTATGTTCAACGTCTACGTCTGCGCCAGATTTCAAGTAAGACCTAAGGAG
GTACATTTACAAGCTGTTAAACGTATTTTAACATATCTTAAAGGAACAAC
TAACCTAGGAATCAACTTCTATAGAAGCCAGGATTTTTCCCTATTAGGAT
ATTGTGATGCAGATTACGCAGGGGACAAATGGGAAAGAAAAAATACTAGC
GGAGGATATCATATATATATATATATATTTCACTACATAAGAGATGTTTT
ATGGTTTTTGAAGTAA
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