rna-KK1_035853

Transcript Overview
Namerna-KK1_035853
Unique Namerna-KK1_035853_Cc_Asha_v1.0
TypemRNA
OrganismCajanus cajan (pigeon pea)
Sequence length324
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Cajanus cajan Asha genome v1.02019-09-17
BLAST: C. cajan Asha genome v1.0 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ccccR060Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvR0195Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuR0192Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccvuR0193Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
asccL0409Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ccvuaR0176Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ccvuaR0177Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
avjccL0185Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjccL0566Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ccccaR0194Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccccaR0195Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccvumR0186Vigna umbellata FF25 genome v1.0Vigna umbellata
ccvumR0188Vigna umbellata FF25 genome v1.0Vigna umbellata

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.006G103800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan10g155100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_05G01105.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va09G048070.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr06.1255Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun06g114700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Cc_v2.0_08449.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-KK1_035853gene-KK1_035853_Cc_Asha_v1.0Cajanus cajangene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_035853rna-KK1_035853_Cc_Asha_v1.0-proteinCajanus cajanpolypeptide
rna-KK1_035853_Cc_Asha_v1.0rna-KK1_035853_Cc_Asha_v1.0Cajanus cajanpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_035853_Cc_Asha_v1.0-exon-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571082112:235360..235683rna-KK1_035853_Cc_Asha_v1.0-exon-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571082112:235360..235683Cajanus cajanexon
rna-KK1_035853_Cc_Asha_v1.0-exon-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571847872:235360..235683rna-KK1_035853_Cc_Asha_v1.0-exon-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571847872:235360..235683Cajanus cajanexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-KK1_035853_Cc_Asha_v1.0-CDS-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571082112:235360..235683rna-KK1_035853_Cc_Asha_v1.0-CDS-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571082112:235360..235683Cajanus cajanCDS
rna-KK1_035853_Cc_Asha_v1.0-CDS-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571847872:235360..235683rna-KK1_035853_Cc_Asha_v1.0-CDS-Scaffold134631-KQ483702.1_Cc_Asha_v1.0-1571847872:235360..235683Cajanus cajanCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-KK1_035853 vs.
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: Cajanus cajan Asha genome v1.0
Date Performed: 2019-09-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 24..41
e-value: 7.3E-9
score: 35.0

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-KK1_035853_Cc_Asha_v1.0 ID=rna-KK1_035853_Cc_Asha_v1.0; Name=rna-KK1_035853; organism=Cajanus cajan; type=mRNA; length=324bp
ATGCATAGGATGCCGAAGAAAAGAGTGAAAATAACGTACATATCGAGTCC
ATTGTTGGTGAGAGCGTGCGATGCTTCTGAGTTCCGATCAGTGGTTCAAC
AACTCACGGGCAAGGACTCCAACAAGGTGGTTCAAACCCCGCATAAGGGT
AATTCTATTTTGATGCATCAAAGTGGAGATCTAAGTGCAAGTGAAGATGG
GAATGGTTCATGTCATTACAATGACATGTCGATGATTACTTCTTCTCTCG
AGTTCGATGAAGATTACTTCTGGAAAGAATTACTTGCACGTTCTGTTTTG
CCGTCACCCTGTGTACTTGTATGA
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protein sequence of rna-KK1_035853_Cc_Asha_v1.0

>rna-KK1_035853_Cc_Asha_v1.0 ID=rna-KK1_035853_Cc_Asha_v1.0; Name=rna-KK1_035853_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=107bp
MHRMPKKRVKITYISSPLLVRACDASEFRSVVQQLTGKDSNKVVQTPHKG
NSILMHQSGDLSASEDGNGSCHYNDMSMITSSLEFDEDYFWKELLARSVL
PSPCVLV
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mRNA from alignment at Scaffold134631-KQ483702.1:235360..235683+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-KK1_035853_Cc_Asha_v1.0 ID=rna-KK1_035853_Cc_Asha_v1.0; Name=rna-KK1_035853; organism=Cajanus cajan; type=mRNA; length=324bp; location=Sequence derived from: Scaffold134631-KQ483702.1:235360..235683+ (Cajanus cajan
ATGCATAGGATGCCGAAGAAAAGAGTGAAAATAACGTACATATCGAGTCC
ATTGTTGGTGAGAGCGTGCGATGCTTCTGAGTTCCGATCAGTGGTTCAAC
AACTCACGGGCAAGGACTCCAACAAGGTGGTTCAAACCCCGCATAAGGGT
AATTCTATTTTGATGCATCAAAGTGGAGATCTAAGTGCAAGTGAAGATGG
GAATGGTTCATGTCATTACAATGACATGTCGATGATTACTTCTTCTCTCG
AGTTCGATGAAGATTACTTCTGGAAAGAATTACTTGCACGTTCTGTTTTG
CCGTCACCCTGTGTACttgtatga
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Coding sequence (CDS) from alignment at Scaffold134631-KQ483702.1:235360..235683+

>rna-KK1_035853_Cc_Asha_v1.0 ID=rna-KK1_035853_Cc_Asha_v1.0; Name=rna-KK1_035853; organism=Cajanus cajan; type=CDS; length=648bp; location=Sequence derived from: Scaffold134631-KQ483702.1:235360..235683+ (Cajanus cajan
ATGCATAGGATGCCGAAGAAAAGAGTGAAAATAACGTACATATCGAGTCC
ATTGTTGGTGAGAGCGTGCGATGCTTCTGAGTTCCGATCAGTGGTTCAAC
AACTCACGGGCAAGGACTCCAACAAGGTGGTTCAAACCCCGCATAAGGGT
AATTCTATTTTGATGCATCAAAGTGGAGATCTAAGTGCAAGTGAAGATGG
GAATGGTTCATGTCATTACAATGACATGTCGATGATTACTTCTTCTCTCG
AGTTCGATGAAGATTACTTCTGGAAAGAATTACTTGCACGTTCTGTTTTG
CCGTCACCCTGTGTACttgtatgaATGCATAGGATGCCGAAGAAAAGAGT
GAAAATAACGTACATATCGAGTCCATTGTTGGTGAGAGCGTGCGATGCTT
CTGAGTTCCGATCAGTGGTTCAACAACTCACGGGCAAGGACTCCAACAAG
GTGGTTCAAACCCCGCATAAGGGTAATTCTATTTTGATGCATCAAAGTGG
AGATCTAAGTGCAAGTGAAGATGGGAATGGTTCATGTCATTACAATGACA
TGTCGATGATTACTTCTTCTCTCGAGTTCGATGAAGATTACTTCTGGAAA
GAATTACTTGCACGTTCTGTTTTGCCGTCACCCTGTGTACttgtatga
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ