Vigun01g039700.1

Transcript Overview
NameVigun01g039700.1
Unique NameVigun01g039700.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length496
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:5444510..5445089 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g039700Vigun01g039700_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g039700.1Vigun01g039700.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g039700.1_Vu_IT97K-499-35_v1.1Vigun01g039700.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g039700.1.v1.1.three_prime_UTR.2Vigun01g039700.1.v1.1.three_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR
Vigun01g039700.1.v1.1.three_prime_UTR.1Vigun01g039700.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g039700.1.v1.1.five_prime_UTR.1Vigun01g039700.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g039700.1.v1.1.CDS.1Vigun01g039700.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
The following BLAST results are available for this feature:
BLAST of Vigun01g039700.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g039700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g039700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g039700.1; organism=Vigna unguiculata; type=mRNA; length=496bp
CCACCTTCCACTGTTCTACTCTCCATCTTAACATCTTCAACCTAATCTCT
CATTTTTCTCTCTCTTCACTTTCCCATGGCATCACCAAAACTCATGTTCA
TGTCTCTCACCACCATCCTCCTCCTCCTCACGGTGTTCTCCGCCACTGTG
TCCGCCCAGAGCTCCCCAACTCCCGCTCCTGACGCCGGCGCAGCCGGATC
AGTTTCCGGCTCCGCCGTGACGGTAGGAGCTGCGGTTGTCTTGTCCATGC
TTGCCATCTTCAAGCAATGAGTCCATTCATGTTGTGTGGTTTCGTTTCTA
TTATACAGTTTGATTTGATTCAGTGATGATTATGGTGATAGGGAGAAATA
ATTCACAAAGGATCTTTTTCTTTGTCATGTTTATTCTTTTTCGAGGCTTT
CTTGTATAATTATTATAAATATATATCATGTGTTTGTTCATTTTGTTTCG
GTGTGTTTTGTTTTCACTTTTTCTTTTTTGTGTATACCGTATAAGG
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protein sequence of Vigun01g039700.1_Vu_IT97K-499-35_v1.1

>Vigun01g039700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g039700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g039700.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=65bp
MASPKLMFMSLTTILLLLTVFSATVSAQSSPTPAPDAGAAGSVSGSAVTV
GAAVVLSMLAIFKQ*
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mRNA from alignment at Vu01:5444510..5445089-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g039700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g039700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g039700.1; organism=Vigna unguiculata; type=mRNA; length=580bp; location=Sequence derived from: Vu01:5444510..5445089- (Vigna unguiculata
CCACCTTCCACTGTTCTACTCTCCATCTTAACATCTTCAACCTAATCTCT
CATTTTTCTCTCTCTTCACTTTCCCATGGCATCACCAAAACTCATGTTCA
TGTCTCTCACCACCATCCTCCTCCTCCTCACGGTGTTCTCCGCCACTGTG
TCCGCCCAGAGCTCCCCAACTCCCGCTCCTGACGCCGGCGCAGCCGGATC
AGTTTCCGGCTCCGCCGTGACGGTAGGAGCTGCGGTTGTCTTGTCCATGC
TTGCCATCTTCAAGCAATGAGTCCATTCATGTTGTGTGGTTTCGTTTCTA
TTATACAGTTTGATTTGATTCAGTGATGATTATGGTGAGTTTGGCGTTTG
TATATAGTGTATACTGTGACAAAATGAGAGAATATTCACTTATATTTACT
TCTGTTATTTAATTGTAGGTGATAGGGAGAAATAATTCACAAAGGATCTT
TTTCTTTGTCATGTTTATTCTTTTTCGAGGCTTTCTTGTATAATTATTAT
AAATATATATCATGTGTTTGTTCATTTTGTTTCGGTGTGTTTTGTTTTCA
CTTTTTCTTTTTTGTGTATACCGTATAAGG
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Coding sequence (CDS) from alignment at Vu01:5444510..5445089-

>Vigun01g039700.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g039700.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g039700.1; organism=Vigna unguiculata; type=CDS; length=195bp; location=Sequence derived from: Vu01:5444510..5445089- (Vigna unguiculata
ATGGCATCACCAAAACTCATGTTCATGTCTCTCACCACCATCCTCCTCCT
CCTCACGGTGTTCTCCGCCACTGTGTCCGCCCAGAGCTCCCCAACTCCCG
CTCCTGACGCCGGCGCAGCCGGATCAGTTTCCGGCTCCGCCGTGACGGTA
GGAGCTGCGGTTGTCTTGTCCATGCTTGCCATCTTCAAGCAATGA
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