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Transcript Overview
| Name | Vigun01g141500.1 |
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| Unique Name | Vigun01g141500.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1147 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g141500.1 | Vigun01g141500.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun01g141500.1_Vu_IT97K-499-35_v1.1 | Vigun01g141500.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g141500.1.v1.1.five_prime_UTR.1 | Vigun01g141500.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g141500.1.v1.1.CDS.1 | Vigun01g141500.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g141500.1.v1.1.CDS.2 | Vigun01g141500.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g141500.1.v1.1.CDS.3 | Vigun01g141500.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g141500.1.v1.1.CDS.4 | Vigun01g141500.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun01g141500.1.v1.1.CDS.5 | Vigun01g141500.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun01g141500.1.v1.1.three_prime_UTR.1 | Vigun01g141500.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR008637 | HR-like lesion-inducer | PFAM | PF05514 | HR_lesion | coord: 1..138
e-value: 3.2E-55
score: 186.1 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun01g141500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g141500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g141500.1; organism=Vigna unguiculata; type=mRNA; length=1147bp
CCGCCGGAAGAGTTGCCTAAGTAGACGTTTCAGTCTCTTTCACGAAAAGA
CTATATCACCCCTCATCGACCTTTATTTTCAATTTTCGCTTCGCACGCTC
TTTTCTCTTTCGTTCTCGCTCTGACCGGGAAAAGGAAAAGAAAGACCAGT
TTTCTTCACGCACCCTAGATTTCCTCTTTCTCCATCTCTCTCTAAAATCT
TAATGGCGTTCTCTTCGTTTCTCGGCAGAGTCCTCTTTGCGTCCGTTTTC
ATCCTCTCTGCTTACCAAGAATTTAATGCTTATGGGGTTGATGGCGGACC
CGCAGCAAAAGCACTGAGACCGAAGTTTGATGCATTTGCCCATCAAGTAC
ATTCTAGAGTTGGATTTCAACTTCCGGATATCGATATGAAGTTTTTAGTT
GCTGGGGCTATTGCTCTCAAGGGCATTGGAGGGATTCTTTTCATACTTGG
CAGCTCTTTTGGAGCTCTCCTTTTGCTTTTGCATCAAGTGATTACTACTC
CCATACTGTATGATTTCTACAATTATGACAGCGAGGACAAAGGATTTATT
CAACTTTTCATCAAATTTACTCAGAATATGGCCCTCTTCGGTGCTTTGTT
GTTTTTCGTTGGGATGAAAAACTCCATTCCTAGAAGGCAACCCAAGAAGA
AGGCTCCCAAAACAAAAACCTATTAGTTGCAATGAGTTCTTGGATTGTTC
CTGGTTGCTCGTTACACCCCTTTTCCAATTCTCCAGGATTTGATTTAGGT
GTCTGTTTCAGAACAAATGCCCCCCTAATGAGTATTCAATGTACCATTCG
TCGCGGAttatatttaatttataattatttatatttgtatgttatttttT
GGTTTGCTTGACAATAGGAACTATCTTTCGATAACTTGTATACGAAGAGG
GAAAAAAATTATCAGAGCCTGTTCATTCAGACTTTGAGTGCCAATTTCGT
TATCTAGCGGATTTGATCGAAAGGTAAAACTGACGGTTGCTATTTTAAAT
TAAGCTTGATTTCCCCCCCACCTTGGCCCGTGATTTGTGTTTCTTGTTTT
TTTTATTTATTTCTTTGGTTCTCTTGGTTTGGCAAGGAAATGAATGCTCA
TTTGAATTTTTCACCCGATGTGGTTAAAAATAGAGATGTATTTAGAG back to topprotein sequence of Vigun01g141500.1_Vu_IT97K-499-35_v1.1 >Vigun01g141500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g141500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g141500.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=158bp
MAFSSFLGRVLFASVFILSAYQEFNAYGVDGGPAAKALRPKFDAFAHQVH
SRVGFQLPDIDMKFLVAGAIALKGIGGILFILGSSFGALLLLLHQVITTP
ILYDFYNYDSEDKGFIQLFIKFTQNMALFGALLFFVGMKNSIPRRQPKKK
APKTKTY* back to topmRNA from alignment at Vu01:32254579..32258118+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun01g141500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g141500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g141500.1; organism=Vigna unguiculata; type=mRNA; length=3540bp; location=Sequence derived from: Vu01:32254579..32258118+ (Vigna unguiculata
CCGCCGGAAGAGTTGCCTAAGTAGACGTTTCAGTCTCTTTCACGAAAAGA
CTATATCACCCCTCATCGACCTTTATTTTCAATTTTCGCTTCGCACGCTC
TTTTCTCTTTCGTTCTCGCTCTGACCGGGAAAAGGAAAAGAAAGACCAGT
TTTCTTCACGCACCCTAGATTTCCTCTTTCTCCATCTCTCTCTAAAATCT
TAATGGCGTTCTCTTCGTTTCTCGGCAGAGTCCTCTTTGCGTCCGTTTTC
ATCCTCTCTGCTTACCAAGAGTTAGTTCATTTTCGTCACTCATTCTTTTC
TCGTACTTCCAATCATGCATGTAGGTTAATTTTGTTGTTGCAGTATTTAT
TGGTTTAACTTTATTTTTTCAACTTCTGCCGTGTTGCTTGTTGTGGTAGT
TTCTCTGTTTGGATCTGTTACGTTCAATTGACTGGTCAAAACGATTCTGC
AGATCTGTGTTTCACACAGTCGAAGTGTATAAAACCGATATTTATTTGCT
TTTCGATTTTGTGTTTATTTTTTTGGATTTCACTTGTTCGTCGCAGTGTC
AGATTTGTTATACGCGTTAGTCCATTTTCTTGGTATGGTAGTTTGATCTC
CTCGCATCTATTGCATTTATTGATTTGCAATTATTGCCACCGTAGTGCAG
TTGCCAGCTTTGATGATTGCTGGTGTTGTTATGGAATCGTTTTATTACAT
TAACGGTTTCGGGTTTTGTCAATCTAACTTTGGGTGGGTAGTTTACGAAT
GAGTTTTGACCGTGTGCTGTTCTTATCAGTTAGCAATTAAGAAGTGGTGA
GGGCACAGGGTAATTTTTGCTGGGTCTCAAATAATTAGTGTGGTTGCTTC
ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTTTG
TAATGTGTTATTTTGAAACTAGGAAATTATTCCAAAAGAAAAAATGGATA
GTCTTACATTATTAATGTTATGTAAAAGTTAGTCAATTTTCAGTTTTCGT
TGAAGGAACTCATCCCTGTTTTTAATTACTTTGTATTTAAATAAAATTCT
CATTAAGCACTCAGAAAATTAATATAAGATGAAACTTTTAAGTAAAAACA
TGTTTATACATAATTTAATTTGTGGTACTCCCTTTTAGCTTCTTCAAAAA
GCTAATTTTAACATTGCATACGATTATTTCAACTAATGAGATAAATTATT
TCCCCATCTTATTTTCGATGCCTACAAGTATTTGTTAAATTTAATCGAAA
CATGACCTAACTCTTTGAGCTAAAAATGACTATTTGTCGGGGAGGGGGGT
ATACTGGTATGCAAACATGTGGCCTTAGTTAACCCTCGGTCGTATCTTGT
TCCTTACTTGTTGAGGACAAGGTGATGATGACATTTATCTTGTATCAAGT
TATGGTTCAAACAGAGATTGCATGTCTTTATTTTAGGGTTAAGGATTGAG
GGAGACAAATCTGTAATCTTTATAACACAATATTACAGTAACTGAATTTG
TGATTGTCGTTGCTAGTGGACTATTATCTTCTAGTTTAAGTGGAATAATG
TGAATTATGTTCCTCTTTTCTTTTCTATACTTTCTTATTTAGATTTGATT
GTTTACGTCCATATAAGAATCTGACTTATAGGTTCATTTGATATATTCTT
GGGCTAGTTGATAGAGTATCTTTTCAGTGTTCACTGTTTACACTTAATCA
GACATTAGAAACTAATAATTCTTTCCATTTGTCATTTATGATTCTGGAAG
CACATAGCAATCAATCTTTACTTGTTTTTATTTATTTGTTTTGTTTTCTT
ATTTATCCTCACTTTCTTTCTATTTTGTACAGATTTAATGCTTATGGGGT
TGATGGCGGACCCGCAGCAAAAGCACTGAGACCGAAGTTTGATGCATTTG
CCCATCAAGTACATTCTAGAGTTGGATTTCAACTTCCGGATATCGATGTT
AGTTTCTGTCTCTTTTATTATCTATCATTTAAGGAAAGCAAGATTAAAAT
ACAACTAAACAGATGAACAAGTTCTTGTGTAGGAACAAAATAAGGACAAG
GTGATTAAATTTAACATGTGACATGGAGTTGAACGCTGCTTGTGTTTGCG
TGCATTTATCTATTATTAATTATAGGTTTAATGTCTATTTAGTGGTTGAT
GAAACATATATATTGGTATTTAATAGTGTTTGTTTTAATAACTGCCTGCG
TTTAAATAAAAGTACCATTTATAGTGAACAAAGAATTAAACATGTCTAGG
GCTTCTAACTCTGGCTTTTCACATACTATTGCTTTACGCTTTACTGTTTG
CAGCACATAGCCAAAATTGGGTTCTCTGCAGGCAATAGGATTAGAAAAAT
AGTTTGAAATTTTGGATAAATGTTCTAAAAAATTGGTAGGCAGGAGACGG
GGAAGTTATGAAACATTGTAGGGGAAAATAATTGAACTTTCTTGCATTGT
CATAGCTGTCATGCATCTAGTGCATCCTTGTATGAACATGTTCCCAACTT
CATCCAATCAAGTGCTCATTTTAGCATACATATAATGTTATTTTGTATGT
AGCAGATGTATTTATATGATTGGTGTCATTAACAGATGAAGTTTTTAGTT
GCTGGGGCTATTGCTCTCAAGGGCATTGGAGGGATTCTTTTCATACTTGG
CAGCTCTTTTGGAGCTCTCCTTTTGGTTTGTAGCTTGCCTTTGACCCATG
AAATTGAAATTGGCTTTCAAGTGCTCAATTTTTGAAGCCTTGGTTATTTT
CTCCTTGTAGCTTTTGCATCAAGTGATTACTACTCCCATACTGTATGATT
TCTACAATTATGACAGCGAGGACAAAGGATTTATTCAACTTTTCATCAAA
TTTACTCAGGTAAGAGCAGTGTTCCTTCTTTTAAAAAGAAATTCATATGG
AATGCTCAACTAGAGCTGTAATGTTTCATGTATTGTTGCAATTTATCGAA
TATTGTACTCCTTGCAGAATATGGCCCTCTTCGGTGCTTTGTTGTTTTTC
GTTGGGATGAAAAACTCCATTCCTAGAAGGCAACCCAAGAAGAAGGCTCC
CAAAACAAAAACCTATTAGTTGCAATGAGTTCTTGGATTGTTCCTGGTTG
CTCGTTACACCCCTTTTCCAATTCTCCAGGATTTGATTTAGGTGTCTGTT
TCAGAACAAATGCCCCCCTAATGAGTATTCAATGTACCATTCGTCGCGGA
TTATATTTAATTTATAATTATTTATATTTGTATGTTATTTTTTGGTTTGC
TTGACAATAGGAACTATCTTTCGATAACTTGTATACGAAGAGGGAAAAAA
ATTATCAGAGCCTGTTCATTCAGACTTTGAGTGCCAATTTCGTTATCTAG
CGGATTTGATCGAAAGGTAAAACTGACGGTTGCTATTTTAAATTAAGCTT
GATTTCCCCCCCACCTTGGCCCGTGATTTGTGTTTCTTGTTTTTTTTATT
TATTTCTTTGGTTCTCTTGGTTTGGCAAGGAAATGAATGCTCATTTGAAT
TTTTCACCCGATGTGGTTAAAAATAGAGATGTATTTAGAG back to topCoding sequence (CDS) from alignment at Vu01:32254579..32258118+ >Vigun01g141500.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g141500.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g141500.1; organism=Vigna unguiculata; type=CDS; length=474bp; location=Sequence derived from: Vu01:32254579..32258118+ (Vigna unguiculata
ATGGCGTTCTCTTCGTTTCTCGGCAGAGTCCTCTTTGCGTCCGTTTTCAT
CCTCTCTGCTTACCAAGAATTTAATGCTTATGGGGTTGATGGCGGACCCG
CAGCAAAAGCACTGAGACCGAAGTTTGATGCATTTGCCCATCAAGTACAT
TCTAGAGTTGGATTTCAACTTCCGGATATCGATATGAAGTTTTTAGTTGC
TGGGGCTATTGCTCTCAAGGGCATTGGAGGGATTCTTTTCATACTTGGCA
GCTCTTTTGGAGCTCTCCTTTTGCTTTTGCATCAAGTGATTACTACTCCC
ATACTGTATGATTTCTACAATTATGACAGCGAGGACAAAGGATTTATTCA
ACTTTTCATCAAATTTACTCAGAATATGGCCCTCTTCGGTGCTTTGTTGT
TTTTCGTTGGGATGAAAAACTCCATTCCTAGAAGGCAACCCAAGAAGAAG
GCTCCCAAAACAAAAACCTATTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008637 | HR_lesion |
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