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Transcript Overview
| Name | Vigun03g322300.1 |
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| Unique Name | Vigun03g322300.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1836 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g322300.1 | Vigun03g322300.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun03g322300.1_Vu_IT97K-499-35_v1.1 | Vigun03g322300.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g322300.1.v1.1.five_prime_UTR.1 | Vigun03g322300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g322300.1.v1.1.CDS.1 | Vigun03g322300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
| Vigun03g322300.1.v1.1.CDS.2 | Vigun03g322300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun03g322300.1.v1.1.three_prime_UTR.1 | Vigun03g322300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
BLAST of Vigun03g322300.1 vs. DB:Swiss
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens OX=9606 GN=HEBP2 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.297e-17 Identity = 52/160 (32.50%), Postives = 86/160 (53.75%), Query Frame = 1
Query: 112 FEIRLYGTSVWMSAPALDISFEKATWDGFHRLFQFTEGANLNFSRIXXXXXXXXXXXXGAGPLQSQGYYVSLYLPVKFQGNPPLPLPELNIRPYEFTTHCVAVRKFSGFANDERIVKEAEKLATSLSRSPWAQSKTRRGYSIAQYNTPIRIVNRKNEVWV 591
+EIR YG + W+S + ++ A GF +L + +G N +I MT PV + PG+GP +SLY+P + Q +PP PL E ++ + V VR F GF++ ++ ++ LA+ L + + Y A YN+P++++NR NEVW+
Sbjct: 38 YEIRHYGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRED--GKVFDEKVYYTAGYNSPVKLLNRNNEVWL 194
BLAST of Vigun03g322300.1 vs. DB:Swiss
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus OX=10090 GN=Hebp2 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.776e-13 Identity = 46/160 (28.75%), Postives = 82/160 (51.25%), Query Frame = 1
Query: 112 FEIRLYGTSVWMSAPALDISFEKATWDGFHRLFQFTEGANLNFSRIXXXXXXXXXXXXGAGPLQSQGYYVSLYLPVKFQGNPPLPLPELNIRPYEFTTHCVAVRKFSGFANDERIVKEAEKLATSLSRSPWAQSKTRRGYSIAQYNTPIRIVNRKNEVWV 591
+EIR YG + W+S + ++ A GF +L + +G N +I +T PV + PG+ P +SLY+P + Q +PP P E ++ + V VR F GF++ ++ ++ LA L + + + A Y++P ++++R NEVW+
Sbjct: 38 YEIRHYGPAKWVSTCVESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRP-SESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLLTLANILREE--GKVFNEKVFYTAGYSSPFQLLDRNNEVWL 194
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011256 | Regulatory factor, effector binding domain superfamily | GENE3D | 3.20.80.10 | | coord: 24..206
e-value: 1.1E-48
score: 167.3 |
| IPR011256 | Regulatory factor, effector binding domain superfamily | SUPERFAMILY | 55136 | Probable bacterial effector-binding domain | coord: 15..199 |
| IPR006917 | SOUL haem-binding protein | PFAM | PF04832 | SOUL | coord: 25..197
e-value: 7.9E-41
score: 140.0 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun03g322300.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g322300.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g322300.1; organism=Vigna unguiculata; type=mRNA; length=1836bp
CTAGGAAAACAATCTTGACATAACGCTTTGAGTTTGAGGTTCTTTTCTTT
GAGGAAAGTGGTCCATTCAACTGTTTTATGATCTGCTTCTTCAAAGACAA
GATGCTGAGGTAATTTCTTGCCGTACGTGAGGAATGTTCCACCATTAGCT
ACAGCTTTCAATAATTTTATTATATAAAATTCTATCGTGTATAACAATTG
ACAAAGAGACTCCTTTTGTAACTGTTTTTTCTGAATACAAATCATTCTTC
TATCTTACTAGATTGTATTTAAAATCATAACACATTAATTTTAGTACATA
ACTCTATTATATATTTCACTGTTTCATTTCAACTATCATTAGAAAATCTA
TATGTAACAAAATAGACTATTTTTCAATAACAAGCTGTGTAGCTGTTACT
TGTCTTTTACTTGCCTAGTTTTTCACCCTCTCTTACCCAAACTGTGGCGC
TGAAGACAAGCAACTCTCATTGATGCAGATGTGGTAGGTTACGTTACAAA
AGGAAACTGATATATTGAAATCTTCAATTAGGTATATAATCACTAAAAAT
CACAATCAGAATCAGAATAAAACAATTGTTACAAAAGTCAACGGCTAAAA
GCCTTCATAAAATGACAGAAGAGGAAGGAAATAGCAAGAGTAAAGAAGGG
AAAAGGAAAGGAGAATGAAGAAGGGAATAACACTACTAACCATAACAGCG
ATCGCGACATGTTTGGCTATGGTTAGCAGTGCGCCGGAGTCCCCACCGTA
CACTGTGGTGCACTCGCAGTCCGATTTCGAGATCAGACTCTATGGAACCT
CCGTTTGGATGTCTGCTCCCGCTCTCGACATTTCCTTCGAGAAAGCCACG
TGGGACGGTTTTCACAGGTTGTTCCAGTTTACAGAAGGCGCCAACCTCAA
TTTCTCGCGAATCCCAATGACCGTTCCCGTCTTGACCACCACCGTCCCCG
GAGCCGGTCCTCTTCAGTCCCAAGGCTACTACGTTAGTTTATACTTACCC
GTTAAGTTCCAAGGAAACCCACCACTGCCGCTTCCAGAACTCAATATCAG
GCCCTATGAGTTCACCACCCACTGCGTTGCGGTTAGAAAGTTCTCTGGAT
TCGCCAATGATGAGAGGATTGTCAAGGAGGCGGAAAAGCTCGCCACCAGC
CTCAGTCGCTCTCCCTGGGCGCAGTCCAAGACTCGCCGTGGTTACTCGAT
CGCGCAGTACAACACTCCCATCCGAATTGTGAATCGCAAAAACGAGGTCT
GGGTGGACATCGATGCTCCCCAATCAGGCTGTGAATCGGTTGGTGTTTCC
GCGTATTGATGGAAGGAGTATGGAAGAATGGTTTGGGACTTGTGAAGGTG
TTGCTTGCCTGCTTCTTGTACAGGTCTGTCTGATGTGTGATATATGTTCA
TATTGTTTAACTGTCATGAAACATAGACTTGTGTTGTGTCTGTAAATAAT
AGGATTGTGTGAGATTTTTCACACGATCATGCCTATGGAAAACAGATTGA
CTCAGTTGCGCTGTGTCAGTTATGTTATGATGGGATTTATAGATGAAAAT
AGGAAGATCGTGGACGAAAGGTAAGACGCAAGACGTAACATGCAAACACT
TCACCTTTTAAGTATAAGACCATAACCAAGTCTGACCTTATAAACAGACA
ACGTGCTAAAGGGAACAATGGCTCAACATTAATGCTTTTACTCAGGTCTT
GCAAATTTAAGAAACTTTTATTAGAACAGAAGTGATTGTTTGTTCTAGAT
GCATTATTTTTGGCTTGTTTGTTTGTTAGCAAACTGAATGTTTTAAGTTG
TGGTTGTGATTGGTTTGGCAATTCAGTGTGCAATCA back to topprotein sequence of Vigun03g322300.1_Vu_IT97K-499-35_v1.1 >Vigun03g322300.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g322300.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g322300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=215bp
MKKGITLLTITAIATCLAMVSSAPESPPYTVVHSQSDFEIRLYGTSVWMS
APALDISFEKATWDGFHRLFQFTEGANLNFSRIPMTVPVLTTTVPGAGPL
QSQGYYVSLYLPVKFQGNPPLPLPELNIRPYEFTTHCVAVRKFSGFANDE
RIVKEAEKLATSLSRSPWAQSKTRRGYSIAQYNTPIRIVNRKNEVWVDID
APQSGCESVGVSAY* back to topmRNA from alignment at Vu03:51799198..51801104+ Legend: mRNAfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun03g322300.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g322300.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g322300.1; organism=Vigna unguiculata; type=mRNA; length=1907bp; location=Sequence derived from: Vu03:51799198..51801104+ (Vigna unguiculata
CTAGGAAAACAATCTTGACATAACGCTTTGAGTTTGAGGTTCTTTTCTTT
GAGGAAAGTGGTCCATTCAACTGTTTTATGATCTGCTTCTTCAAAGACAA
GATGCTGAGGTAATTTCTTGCCGTACGTGAGGAATGTTCCACCATTAGCT
ACAGCTTTCAATAATTTTATTATATAAAATTCTATCGTGTATAACAATTG
ACAAAGAGACTCCTTTTGTAACTGTTTTTTCTGAATACAAATCATTCTTC
TATCTTACTAGATTGTATTTAAAATCATAACACATTAATTTTAGTACATA
ACTCTATTATATATTTCACTGTTTCATTTCAACTATCATTAGAAAATCTA
TATGTAACAAAATAGACTATTTTTCAATAACAAGCTGTGTAGCTGTTACT
TGTCTTTTACTTGCCTAGTTTTTCACCCTCTCTTACCCAAACTGTGGCGC
TGAAGACAAGCAACTCTCATTGATGCAGATGTGGTAGGTTACGTTACAAA
AGGAAACTGATATATTGAAATCTTCAATTAGGTATATAATCACTAAAAAT
CACAATCAGAATCAGAATAAAACAATTGTTACAAAAGTCAACGGCTAAAA
GCCTTCATAAAATGACAGAAGAGGAAGGAAATAGCAAGAGTAAAGAAGGG
AAAAGGAAAGGAGAATGAAGAAGGGAATAACACTACTAACCATAACAGCG
ATCGCGACATGTTTGGCTATGGTTAGCAGTGCGCCGGAGTCCCCACCGTA
CACTGTGGTGCACTCGCAGTCCGATTTCGAGATCAGACTCTATGGAACCT
CCGTTTGGATGTCTGCTCCCGCTCTCGACATTTCCTTCGAGAAAGCCACG
TGGGACGGTTTTCACAGGTAATTCTTCTTTCCCCTCACAATACCTAACTA
ACTAACCAACCAACTAACCCCATTTTACTATCTCCCAGGTTGTTCCAGTT
TACAGAAGGCGCCAACCTCAATTTCTCGCGAATCCCAATGACCGTTCCCG
TCTTGACCACCACCGTCCCCGGAGCCGGTCCTCTTCAGTCCCAAGGCTAC
TACGTTAGTTTATACTTACCCGTTAAGTTCCAAGGAAACCCACCACTGCC
GCTTCCAGAACTCAATATCAGGCCCTATGAGTTCACCACCCACTGCGTTG
CGGTTAGAAAGTTCTCTGGATTCGCCAATGATGAGAGGATTGTCAAGGAG
GCGGAAAAGCTCGCCACCAGCCTCAGTCGCTCTCCCTGGGCGCAGTCCAA
GACTCGCCGTGGTTACTCGATCGCGCAGTACAACACTCCCATCCGAATTG
TGAATCGCAAAAACGAGGTCTGGGTGGACATCGATGCTCCCCAATCAGGC
TGTGAATCGGTTGGTGTTTCCGCGTATTGATGGAAGGAGTATGGAAGAAT
GGTTTGGGACTTGTGAAGGTGTTGCTTGCCTGCTTCTTGTACAGGTCTGT
CTGATGTGTGATATATGTTCATATTGTTTAACTGTCATGAAACATAGACT
TGTGTTGTGTCTGTAAATAATAGGATTGTGTGAGATTTTTCACACGATCA
TGCCTATGGAAAACAGATTGACTCAGTTGCGCTGTGTCAGTTATGTTATG
ATGGGATTTATAGATGAAAATAGGAAGATCGTGGACGAAAGGTAAGACGC
AAGACGTAACATGCAAACACTTCACCTTTTAAGTATAAGACCATAACCAA
GTCTGACCTTATAAACAGACAACGTGCTAAAGGGAACAATGGCTCAACAT
TAATGCTTTTACTCAGGTCTTGCAAATTTAAGAAACTTTTATTAGAACAG
AAGTGATTGTTTGTTCTAGATGCATTATTTTTGGCTTGTTTGTTTGTTAG
CAAACTGAATGTTTTAAGTTGTGGTTGTGATTGGTTTGGCAATTCAGTGT
GCAATCA back to topCoding sequence (CDS) from alignment at Vu03:51799198..51801104+ >Vigun03g322300.1_Vu_IT97K-499-35_v1.1 ID=Vigun03g322300.1_Vu_IT97K-499-35_v1.1; Name=Vigun03g322300.1; organism=Vigna unguiculata; type=CDS; length=645bp; location=Sequence derived from: Vu03:51799198..51801104+ (Vigna unguiculata
ATGAAGAAGGGAATAACACTACTAACCATAACAGCGATCGCGACATGTTT
GGCTATGGTTAGCAGTGCGCCGGAGTCCCCACCGTACACTGTGGTGCACT
CGCAGTCCGATTTCGAGATCAGACTCTATGGAACCTCCGTTTGGATGTCT
GCTCCCGCTCTCGACATTTCCTTCGAGAAAGCCACGTGGGACGGTTTTCA
CAGGTTGTTCCAGTTTACAGAAGGCGCCAACCTCAATTTCTCGCGAATCC
CAATGACCGTTCCCGTCTTGACCACCACCGTCCCCGGAGCCGGTCCTCTT
CAGTCCCAAGGCTACTACGTTAGTTTATACTTACCCGTTAAGTTCCAAGG
AAACCCACCACTGCCGCTTCCAGAACTCAATATCAGGCCCTATGAGTTCA
CCACCCACTGCGTTGCGGTTAGAAAGTTCTCTGGATTCGCCAATGATGAG
AGGATTGTCAAGGAGGCGGAAAAGCTCGCCACCAGCCTCAGTCGCTCTCC
CTGGGCGCAGTCCAAGACTCGCCGTGGTTACTCGATCGCGCAGTACAACA
CTCCCATCCGAATTGTGAATCGCAAAAACGAGGTCTGGGTGGACATCGAT
GCTCCCCAATCAGGCTGTGAATCGGTTGGTGTTTCCGCGTATTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011256 | Reg_factor_effector_dom_sf |
| IPR006917 | SOUL_haem-bd |
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