Vigun05g254100.4
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: VIP2_NICBE (Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana OX=4100 GN=VIP2 PE=1 SV=1) HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0 Identity = 397/508 (78.15%), Postives = 439/508 (86.42%), Query Frame = 1
Query: 364 LGVSPILGNAGPRITSSMGNMVGAGNIGR-ISSG-GLSVPGLASRIXXXXXXXXXXXXXXXXXRLISGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSSPFDINDFPQLSTHPSSAGGPQGQLGSLRKQGIGVSPIVQQNQEFSIQKEDFPALPGFKGGNADFAMDMYQKEQLHDNAVSMMQSQHFSMGRSSGFSLGGSYPSHRTQQ---HTPXXXXXXXXXXXXXXQDLLHLHGTDMFPSSHSTYHSQTSGPPGIGLRPLNSPNT--GMGSYDXXXXXXXXXXXXXXXXXXXMSAANQSFRDQGMKSMQSAQSSQDPFGALGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLPQ 1866
LGVSPILGNAGPR+T+S+GN+VG GNIGR ISSG GLSVPGLASR+N+ N+GSG L VQG NRL+SGVL Q SPQV+SMLGNSYP AGGPLSQ+HVQ + N NSMG+LNDVNS D SPFDINDFPQLS+ PSSAGGPQGQLGSLRKQG+ SPIVQQNQEFSIQ EDFPALPGFKGGNAD+AMD +QKEQLHDN +SMMQ QHFSMGRS+GF+LGG+Y S+R QQ H PSVSS GVSFS++NNQDLL LHG+D+F SSHS+Y Q GPPGIGLRPLNS T G+GSYDQLIQQYQQ Q QSQFRLQQMS Q FRDQ +KSMQS Q + DPFG LGL SV+ +SDPDL LA GIDLTTLGLNLNS+ENLYKTF SPWSDEPAKGDPEF+V QCYYAKQPP L+Q YF KF ++TLFYIFYSMPKDEAQLYAANELY RGWFYH+EHR WF+RVANMEPLVKTN YERGSY CFDPNT+ET+ KDNFVLH E++EKRP LPQ
Sbjct: 99 LGVSPILGNAGPRMTNSVGNIVGGGNIGRSISSGAGLSVPGLASRLNMNANSGSGNLNVQGPNRLMSGVLQQASPQVLSMLGNSYP-AGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQLGSLRKQGL--SPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQQHFSMGRSAGFNLGGTYSSNRPQQQLQHAPSVSSGGVSFSNINNQDLLSLHGSDVFQSSHSSYQQQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFRDQSLKSMQS-QVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGSPWSDEPAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIHKDNFVLHCEMLEKRPVLPQ 602
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: VIP2_ARATH (Probable NOT transcription complex subunit VIP2 OS=Arabidopsis thaliana OX=3702 GN=VIP2 PE=1 SV=2) HSP 1 Score: 597.43 bits (1539), Expect = 0.000e+0 Identity = 381/647 (58.89%), Postives = 459/647 (70.94%), Query Frame = 1
Query: 49 PEGAAGRSFATSFSGQSGVASPVFHHSGSIQGLHNIHGSYNVPNIPXXXXXXXXXXXXVPTGGGVQQPSASLSSGRFASNNLPVALSQLXX-------------------------------------XXXXXXXXXXXXXXLGVSPILGNAGPRITSSMGNMVGAGNIGR-ISSGGLSVPGLASRIXXXXXXXXXXXXXXXXXRLISGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQTVNNLNSMGMLNDVNSGDSSPFDIN-DFPQLSTHPSSAGGPQGQLGSLRKQGIGVSPIVQQNQEFSIQKEDFPALPGFKGGNADFAMDMYQKEQLHDNAVSMMQSQHFSMGRSSGFSLGGSYPSHRTQQHTPXXXXXXXXXXXXXXQDLLHLHGTDMFPSSHSTYHSQTSGPPGIGLRPLNSPN--TGMGSYDXXXXXXXXXXXXXXXXXXXMSAANQSFRDQGMKSMQSAQSSQDPFGALGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLPQ 1866
P+G+ GRSF S+SGQSG SP FHH+G++QGLHNIHG+YNV N+ +LTSRNS++NS+P+ G VQQP+ S SSGRFASNNLPV LSQLSH +S G S NS G+G+S +LGN+GPRIT+SMGNMVG GN+GR ISSGGLS+PGL+SR+NL N+GSG R++ GVLPQGS QV+SMLGNSY + GGPLSQ+HVQ+VNN+ ML+D + DSS FDIN DFPQL++ P SAGG QG LGSLRKQG+GV P+VQQNQEFSIQ EDFPALPG+KGGN+++ MD++QKEQLHDNA+SMM SQ+FSMGRS GF+LG +Y SHR QQ + S T G G+GLRPL+SPN + +G YDQLIQQYQQ QNQSQF +QQMS+ NQ FRD MKS QS DPF LGL V++ S+P+L LA GIDLTTLGL+LNS+ NLYKTF SPW++EPAK + EF+V CYYA +PP L + F +FS E LFY FYSMPKDEAQLYAA+ELY+RGWFYHKE R WF RV EPLV+ TYERG+Y DPN+F+TVRK++FV+ YEL+EKRPSL Q
Sbjct: 16 PDGS-GRSFTASYSGQSGAPSPSFHHTGNLQGLHNIHGNYNVGNMQGTLTSRNSSMNSIPSAG-VQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITNSMGNMVGGGNLGRNISSGGLSIPGLSSRLNLAANSGSGLNVQGQN-RMMGGVLPQGS-QVMSMLGNSYHTGGGPLSQNHVQSVNNM----MLSD-HPNDSSLFDINNDFPQLTSRPGSAGGTQGHLGSLRKQGLGV-PLVQQNQEFSIQNEDFPALPGYKGGNSEYPMDLHQKEQLHDNAMSMMHSQNFSMGRSGGFNLGATYSSHRPQQQP--------------------------------QHTSSTGGLQGLGLRPLSSPNAVSSIG-YDQLIQQYQQHQNQSQFPVQQMSSINQ-FRDSEMKS---TQSEADPFCLLGLLDVLNRSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVG--EPLVRAATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSLLQ 613
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: CNOT2_HUMAN (CCR4-NOT transcription complex subunit 2 OS=Homo sapiens OX=9606 GN=CNOT2 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 4.508e-35 Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query: 1348 DPFGALGLFSVVHI--SDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAK-GDPEFSVLQCYYAK-----QPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLP 1863
D FG +GL + + +DP + +LA G DLTTLGLNLNS ENLY F SPW+ P + D +F V Y + A+ G ++ + LFY++Y D QL AA EL+ R W YHKE R W R MEP +KTNTYERG+Y+ FD + V K+ F L Y+ +E+RP LP
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLG---RYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: CNOT2_MOUSE (CCR4-NOT transcription complex subunit 2 OS=Mus musculus OX=10090 GN=Cnot2 PE=1 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 5.053e-35 Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query: 1348 DPFGALGLFSVVHI--SDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAK-GDPEFSVLQCYYAK-----QPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLP 1863
D FG +GL + + +DP + +LA G DLTTLGLNLNS ENLY F SPW+ P + D +F V Y + A+ G ++ + LFY++Y D QL AA EL+ R W YHKE R W R MEP +KTNTYERG+Y+ FD + V K+ F L Y+ +E+RP LP
Sbjct: 353 DQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLG---RYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: NOT2_SCHPO (General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=not2 PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 2.135e-27 Identity = 65/168 (38.69%), Postives = 88/168 (52.38%), Query Frame = 1
Query: 1366 GLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSEN---LYKTFRSPWSDEPAK---GDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKR 1851
L ++ + D ++ L G DL LG +L E + SPW++ K P F + CY PP F +FS ETLFYIFY+MP+D Q AA EL R W +HKE R W V M+PL +T +ERG Y FDP ++ ++KD F+L Y +E R
Sbjct: 134 SLLPIIRMEDSEMSTLQLGCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVSQPMFKLPACYKNVNPPPAISKIF-QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKD-FLLMYAALEDR 299
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: RGA_DROME (Regulator of gene activity OS=Drosophila melanogaster OX=7227 GN=Rga PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 4.577e-23 Identity = 62/174 (35.63%), Postives = 95/174 (54.60%), Query Frame = 1
Query: 1354 FGALGLFSVVHI--SDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKG-DPEFSVLQCYYAK--QPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSL 1860
FG +GL + + +DP+L L+ G DLT LGLNLNS E+L+ TF P+ +P + D EF+V Y L K + LF++FY+ D QL AA EL+ R W YH E + W R+ ++ K T ERG+++ FD +++ + K F + E ++K P++
Sbjct: 404 FGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAGPFVAQPCRAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYYFDAQSWKRLSKV-FQIDPEKLDKCPNI 576
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: NOT2_YEAST (General negative regulator of transcription subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CDC36 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.484e-13 Identity = 62/192 (32.29%), Postives = 90/192 (46.88%), Query Frame = 1
Query: 1348 DPFGALGLFSVVHISDPDLKY-----LAHGIDLTT----LGLNLNSSE-NLYKTFRSPWSD------EPAKGDPE-FS----VLQCYYAKQPPALH-----QGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTN-TYERGSYHCFDPNTFETVRKDNFVLHYELV 1842
+ FG L ++ + D +L + G DL++ LG+ +S + + TF+SPW++ EP PE F+ VLQ PP + Q F ETLF++FY P Q EL KR W YHK + W + MEP+V + ERGSY FDP +E ++D F+L Y +
Sbjct: 2 EKFGLKALVPLLKLEDKELSSTYDHSMTLGADLSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRFFTPESFTNIPGVLQSTVT--PPCFNSIQNDQQRVALFQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTKDPMMEPIVSADGLSERGSYVFFDPQRWEKCQRD-FLLFYNAI 190
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus OX=10090 GN=Cnot3 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.113e-9 Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 1579 YFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKR 1851
++ + S ETLF+IFY + +AQ AA L K+ W +H ++ WF R + EP T+ +E+G+Y FD + +K+ F Y +E R
Sbjct: 660 FYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 748
BLAST of Vigun05g254100.4 vs. DB:Swiss
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens OX=9606 GN=CNOT3 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.307e-9 Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 1579 YFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKR 1851
++ + S ETLF+IFY + +AQ AA L K+ W +H ++ WF R + EP T+ +E+G+Y FD + +K+ F Y +E R
Sbjct: 662 FYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR--HEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDR 750 The following BLAST results are available for this feature:
BLAST of Vigun05g254100.4 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 9
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun05g254100.4_Vu_IT97K-499-35_v1.1 ID=Vigun05g254100.4_Vu_IT97K-499-35_v1.1; Name=Vigun05g254100.4; organism=Vigna unguiculata; type=mRNA; length=3020bpback to top protein sequence of Vigun05g254100.4_Vu_IT97K-499-35_v1.1 >Vigun05g254100.4_Vu_IT97K-499-35_v1.1 ID=Vigun05g254100.4_Vu_IT97K-499-35_v1.1; Name=Vigun05g254100.4_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=624bpback to top mRNA from alignment at Vu05:44862471..44871171- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun05g254100.4_Vu_IT97K-499-35_v1.1 ID=Vigun05g254100.4_Vu_IT97K-499-35_v1.1; Name=Vigun05g254100.4; organism=Vigna unguiculata; type=mRNA; length=8701bp; location=Sequence derived from: Vu05:44862471..44871171- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu05:44862471..44871171- >Vigun05g254100.4_Vu_IT97K-499-35_v1.1 ID=Vigun05g254100.4_Vu_IT97K-499-35_v1.1; Name=Vigun05g254100.4; organism=Vigna unguiculata; type=CDS; length=1872bp; location=Sequence derived from: Vu05:44862471..44871171- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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