Vigun08g006000.1

Transcript Overview
NameVigun08g006000.1
Unique NameVigun08g006000.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length534
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:523659..524806 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR376Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuL057Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL779Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuL0776Cajanus cajan Asha genome v1.0Cajanus cajan
vuzwsR581Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR608Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR621Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vrvvuL390Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL439Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL393Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL560Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL582Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR397Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR399Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL303Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL306Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL376Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL473Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL600Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL323Cicer arietinum
carvuL324Cicer arietinum
carvuL397Cicer arietinum
vuvumR657Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR677Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR691Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR711Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR715Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL227Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR466Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g006000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g006000Vigun08g006000_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g006000.1_Vu_IT97K-499-35_v1.1Vigun08g006000.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide
Vigun08g006000.1Vigun08g006000.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g006000.1.v1.1.CDS.1Vigun08g006000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g006000.1.v1.1.CDS.2Vigun08g006000.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g006000.1.v1.1.CDS.3Vigun08g006000.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g006000.1.v1.1.CDS.4Vigun08g006000.1.v1.1.CDS.4_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g006000.1.v1.1.CDS.5Vigun08g006000.1.v1.1.CDS.5_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
[Close]
BLAST of Vigun08g006000.1 vs. DB:Swiss
Match: ERG3_ORYSJ (Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG3 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.994e-24
Identity = 52/147 (35.37%), Postives = 87/147 (59.18%), Query Frame = 1 
Query:    1 MKRGILEVLVVNAKGIIHTNFVGTPSYYVIIECGTQTRITKVSSGKHEKPRWNEKFIFDLSEFDCKNSTYLKCRIMDTELFRNGGFVGEAKIFIGGIILEGSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKFIADNNEEYLMEKPD 441
            M +G LEVL+V AKG+ +T+++     Y +++C +Q + + V+SGK   P WNE F+F ++     N+T L  ++MD++   +  FVGEA I +  I  EGS      I P  YNVV ++  Y+G+IK+G  F  +++ +  + + D
Sbjct:    1 MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSVT----HNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGS------IPPTVYNVV-KEEEYRGEIKVGLTFTPEDDRDRGLSEED 136
[Close]
BLAST of Vigun08g006000.1 vs. DB:Swiss
Match: ERG3_ORYSI (Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=ERG3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.994e-24
Identity = 52/147 (35.37%), Postives = 87/147 (59.18%), Query Frame = 1 
Query:    1 MKRGILEVLVVNAKGIIHTNFVGTPSYYVIIECGTQTRITKVSSGKHEKPRWNEKFIFDLSEFDCKNSTYLKCRIMDTELFRNGGFVGEAKIFIGGIILEGSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKFIADNNEEYLMEKPD 441
            M +G LEVL+V AKG+ +T+++     Y +++C +Q + + V+SGK   P WNE F+F ++     N+T L  ++MD++   +  FVGEA I +  I  EGS      I P  YNVV ++  Y+G+IK+G  F  +++ +  + + D
Sbjct:    1 MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSVT----HNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGS------IPPTVYNVV-KEEEYRGEIKVGLTFTPEDDRDRGLSEED 136
[Close]
BLAST of Vigun08g006000.1 vs. DB:Swiss
Match: Y1322_ARATH (C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana OX=3702 GN=At1g63220 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.995e-22
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 1 
Query:    1 MKRGILEVLVVNAKGIIHTNFVGTPSYYVIIECGTQTRITKVSSGKHEKPRWNEKFIFDLSEFDCKNSTYLKCRIMDTELFRNGGFVGEAKIFIGGIILEGSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKFIADNNEEYLMEKPDEFKGYEKKES 471
            M  G LEV++V+AKG+   +F+     YV + C TQ + + V+ G    P WNE FIF +SE     +T LK +I D ++      VGEA I +  + +EGS      I P  YNVV +D  YKG+I +   F    N    M++ + + G++  E+
Sbjct:    1 MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE----GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS------IPPTAYNVV-KDEEYKGEIWVALSFKPSENRSRGMDE-ESYGGWKNSEA 145
[Close]
BLAST of Vigun08g006000.1 vs. DB:Swiss
Match: ERG1_ORYSJ (Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ERG1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.018e-20
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:   10 GILEVLVVNAKGIIHTNF---VGTPSYYVIIECGTQTRITKVSSGKHEKPRWNEKFIFDLSEFDCKNSTYLKCRIMDTELFRNGGFVGEAKIFIGGIILEGSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKFIA 405
            G+LEV +V+AKG+   +F   +G    YV+++  +Q R + V+  + + P WNE F F ++         L  R+MD + F    F+GEA I +  +I  G + G  E+  + + VVL D TY G+I++   F A
Sbjct:    5 GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQINSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHRVVLADKTYHGEIRVSLTFTA 139
[Close]
BLAST of Vigun08g006000.1 vs. DB:Swiss
Match: ERG1_ORYSI (Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ERG1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.018e-20
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:   10 GILEVLVVNAKGIIHTNF---VGTPSYYVIIECGTQTRITKVSSGKHEKPRWNEKFIFDLSEFDCKNSTYLKCRIMDTELFRNGGFVGEAKIFIGGIILEGSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKFIA 405
            G+LEV +V+AKG+   +F   +G    YV+++  +Q R + V+  + + P WNE F F ++         L  R+MD + F    F+GEA I +  +I  G + G  E+  + + VVL D TY G+I++   F A
Sbjct:    5 GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQINSTAATGQHKLFLRLMDHDTFSRDDFLGEATINVTDLISLGMEHGTWEMSESKHRVVLADKTYHGEIRVSLTFTA 139
[Close]
BLAST of Vigun08g006000.1 vs. DB:Swiss
Match: PP16B_CUCMA (16 kDa phloem protein 2 OS=Cucurbita maxima OX=3661 GN=PP16-2 PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 1.045e-12
Identity = 37/134 (27.61%), Postives = 68/134 (50.75%), Query Frame = 1 
Query:    1 MKRGILEVLVVNAKGIIHTNFVGTP-SYYVIIECGTQTRITKVSSGKHEKPRWNEKFIFDLSEFDCKNSTYLKCRIMDTELFRNGGFVGEAKIFIGGIILEGSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKF 399
            M  G++EV +++ KG+   + +  P   Y  I    Q R++KV+      P WNEKF F +         ++  ++MD +      ++G+ KI +  ++ EG  +G+ E+ P  Y V+     +KG+I++G  F
Sbjct:    1 MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPDPIWNEKFKFLVEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVQNLLAEGVRKGWSELPPRMYQVLAHKIYFKGEIEVGVFF 134
[Close]
BLAST of Vigun08g006000.1 vs. DB:Swiss
Match: PP16A_CUCMA (16 kDa phloem protein 1 OS=Cucurbita maxima OX=3661 GN=PP16-1 PE=1 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 1.928e-12
Identity = 38/135 (28.15%), Postives = 71/135 (52.59%), Query Frame = 1 
Query:    1 MKRGILEVLVVNAKGIIHTNFVGTP-SYYVIIECGTQTRITKVSSGKHEKPRWNEKFIFDLSEFDCKNSTY-LKCRIMDTELFRNGGFVGEAKIFIGGIILEGSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKF 399
            M  G++EV +++ KG+   + +  P   Y  I    Q R++KV+      P W+EKF F L+E+      + +  ++MD +      ++G+ KI +  ++ EG  +G  E+ P  Y+V+     +KG+I++G  F
Sbjct:    1 MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPNPLWDEKFKF-LAEYPGSGGDFHILFKVMDHDAIDGDDYIGDVKIDVKNLLAEGVRKGKSEMPPRMYHVLAHKIHFKGEIEVGVSF 134
The following BLAST results are available for this feature:
BLAST of Vigun08g006000.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
ERG3_ORYSJ1.994e-2435.37Elicitor-responsive protein 3 OS=Oryza sativa subs... [more]
ERG3_ORYSI1.994e-2435.37Elicitor-responsive protein 3 OS=Oryza sativa subs... [more]
Y1322_ARATH8.995e-2235.03C2 domain-containing protein At1g63220 OS=Arabidop... [more]
ERG1_ORYSJ3.018e-2033.33Elicitor-responsive protein 1 OS=Oryza sativa subs... [more]
ERG1_ORYSI3.018e-2033.33Elicitor-responsive protein 1 OS=Oryza sativa subs... [more]
PP16B_CUCMA1.045e-1227.6116 kDa phloem protein 2 OS=Cucurbita maxima OX=366... [more]
PP16A_CUCMA1.928e-1228.1516 kDa phloem protein 1 OS=Cucurbita maxima OX=366... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainSMARTSM00239C2_3ccoord: 5..106
e-value: 0.0035
score: 26.6
IPR000008C2 domainPFAMPF00168C2coord: 4..96
e-value: 1.3E-13
score: 51.1
IPR000008C2 domainPROSITEPS50004C2coord: 1..91
score: 9.702
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 2..135
e-value: 3.6E-18
score: 68.0
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 2..134

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g006000.1; organism=Vigna unguiculata; type=mRNA; length=534bp
ATGAAGAGAGGAATTCTTGAAGTACTTGTTGTCAATGCAAAAGGAATTAT
ACACACAAATTTTGTTGGAACACCTTCTTACTATGTGATTATTGAATGTG
GCACTCAGACTCGAATAACAAAAGTTTCATCAGGAAAACATGAGAAACCT
CGGTGGAATGAGAAATTCATATTTGATTTGTCGGAGTTTGATTGCAAGAA
TTCAACGTATCTTAAATGTAGAATCATGGACACAGAACTCTTCAGAAATG
GTGGATTTGTTGGTGAAGCCAAAATTTTCATAGGTGGAATAATATTGGAA
GGAAGTGATCAGGGATACATAGAAATACAACCAGCTCCATATAATGTGGT
TCTTCAAGATCACACTTACAAAGGACAAATAAAAATTGGATTTAAATTCA
TTGCTGATAATAATGAAGAGTACTTGATGGAGAAACCAGATGAATTCAAG
GGTTATGAGAAGAAGGAATCACCCAATTCAATTTTTGGATGGATTTGGAG
AATATCACTGTGGAAAATCTTGTTTTTCTATTAG
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protein sequence of Vigun08g006000.1_Vu_IT97K-499-35_v1.1

>Vigun08g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g006000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=178bp
MKRGILEVLVVNAKGIIHTNFVGTPSYYVIIECGTQTRITKVSSGKHEKP
RWNEKFIFDLSEFDCKNSTYLKCRIMDTELFRNGGFVGEAKIFIGGIILE
GSDQGYIEIQPAPYNVVLQDHTYKGQIKIGFKFIADNNEEYLMEKPDEFK
GYEKKESPNSIFGWIWRISLWKILFFY*
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mRNA from alignment at Vu08:523659..524806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g006000.1; organism=Vigna unguiculata; type=mRNA; length=1148bp; location=Sequence derived from: Vu08:523659..524806+ (Vigna unguiculata
ATGAAGAGAGGAATTCTTGAAGTACTTGTTGTCAATGCAAAAGGAATTAT
ACACACAAATTTTGTTGGTATATTATTTTCGTTTATTGCATCCCAATTTC
AATTTATCCAAAACTATTTTTTTATCAGAAAATTGTTCATTTCTCTTTGA
ACAAAATACTGCAGGAACACCTTCTTACTATGTGATTATTGAATGTGGCA
CTCAGACTCGAATAACAAAAGTTTCATCAGGTTAAAGTATATGTTATTCA
AAATTTAGGTTATTCAAAATATATTAAAGTAATAAAATTTAGGTTTAACT
CGTTTTTTTTTATTTTTTATGAAAGTGCAATATTCTTGTTGTTTTTATGT
GACTTGTTTTGACATAATTGTATGTGATGCAGGAAAACATGAGAAACCTC
GGTGGAATGAGAAATTCATATTTGATTTGTCGGAGTTTGATTGCAAGAAT
TCAACGTATCTTAAATGTAGAATCATGGACACAGAACTCTTCAGAAATGG
TGGATTTGTTGGTGAAGCCAAGTAATCTCTTATCTATTTTTACACACCAA
TTGTTGAAAAAAATACATAACTTTTATAAAATGTAAACATCAACTATTTT
ATAATTTAATTTAAAGACAAAATACCATCTTCATTTTTTATAATAATTTG
AGAATGAAAAATATATTTAATCTGTAAAATTATTTTTGCGTAAGAAACAA
TCTTGTGAAGATACGATTATTGTTGGAAAGGTTTAGTTTATTTATATATT
TTTTTGCACAATTAACATATTTTTGTGATAAAGCAGAATTTTCATAGGTG
GAATAATATTGGAAGGAAGTGATCAGGGATACATAGAAATACAACCAGCT
CCATATAATGTGGTTCTTCAAGATCACACTTACAAAGGACAAATAAAAAT
TGGATTTAAATTCATTGCTGATAATGTAGGGTTCATCTTTTCTAGCACCT
GCAAATTAATTAATTAATTAATTAATCAATTATTAACTAATAAATGCTAA
TTAGTTAGTGTGAATTTGTTAACAGAATGAAGAGTACTTGATGGAGAAAC
CAGATGAATTCAAGGGTTATGAGAAGAAGGAATCACCCAATTCAATTTTT
GGATGGATTTGGAGAATATCACTGTGGAAAATCTTGTTTTTCTATTAG
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Coding sequence (CDS) from alignment at Vu08:523659..524806+

>Vigun08g006000.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g006000.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g006000.1; organism=Vigna unguiculata; type=CDS; length=534bp; location=Sequence derived from: Vu08:523659..524806+ (Vigna unguiculata
ATGAAGAGAGGAATTCTTGAAGTACTTGTTGTCAATGCAAAAGGAATTAT
ACACACAAATTTTGTTGGAACACCTTCTTACTATGTGATTATTGAATGTG
GCACTCAGACTCGAATAACAAAAGTTTCATCAGGAAAACATGAGAAACCT
CGGTGGAATGAGAAATTCATATTTGATTTGTCGGAGTTTGATTGCAAGAA
TTCAACGTATCTTAAATGTAGAATCATGGACACAGAACTCTTCAGAAATG
GTGGATTTGTTGGTGAAGCCAAAATTTTCATAGGTGGAATAATATTGGAA
GGAAGTGATCAGGGATACATAGAAATACAACCAGCTCCATATAATGTGGT
TCTTCAAGATCACACTTACAAAGGACAAATAAAAATTGGATTTAAATTCA
TTGCTGATAATAATGAAGAGTACTTGATGGAGAAACCAGATGAATTCAAG
GGTTATGAGAAGAAGGAATCACCCAATTCAATTTTTGGATGGATTTGGAG
AATATCACTGTGGAAAATCTTGTTTTTCTATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf