Vigun08g060300.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_PHAVU (Photosystem II reaction center protein M OS=Phaseolus vulgaris OX=3885 GN=psbM PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 5.029e-16 Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_SOYBN (Photosystem II reaction center protein M OS=Glycine max OX=3847 GN=psbM PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_POPTR (Photosystem II reaction center protein M OS=Populus trichocarpa OX=3694 GN=psbM PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_POPAL (Photosystem II reaction center protein M OS=Populus alba OX=43335 GN=psbM PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_PEA (Photosystem II reaction center protein M OS=Pisum sativum OX=3888 GN=psbM PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_OENEH (Photosystem II reaction center protein M OS=Oenothera elata subsp. hookeri OX=85636 GN=psbM PE=3 SV=2) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_LOTJA (Photosystem II reaction center protein M OS=Lotus japonicus OX=34305 GN=psbM PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_GOSHI (Photosystem II reaction center protein M OS=Gossypium hirsutum OX=3635 GN=psbM PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_GOSBA (Photosystem II reaction center protein M OS=Gossypium barbadense OX=3634 GN=psbM PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_EUCGG (Photosystem II reaction center protein M OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psbM PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15 Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 Query: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct: 1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34 The following BLAST results are available for this feature:
BLAST of Vigun08g060300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=mRNA; length=105bpback to top protein sequence of Vigun08g060300.1_Vu_IT97K-499-35_v1.1 >Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=35bpback to top mRNA from alignment at Vu08:7954440..7954544+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=mRNA; length=105bp; location=Sequence derived from: Vu08:7954440..7954544+ (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu08:7954440..7954544+ >Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=CDS; length=105bp; location=Sequence derived from: Vu08:7954440..7954544+ (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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