Vigun08g060300.1

Transcript Overview
NameVigun08g060300.1
Unique NameVigun08g060300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length105
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:7954440..7954544 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g060300Vigun08g060300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g060300.1Vigun08g060300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g060300.1_Vu_IT97K-499-35_v1.1Vigun08g060300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g060300.1.v1.1.CDS.1Vigun08g060300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_PHAVU (Photosystem II reaction center protein M OS=Phaseolus vulgaris OX=3885 GN=psbM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.029e-16
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_SOYBN (Photosystem II reaction center protein M OS=Glycine max OX=3847 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_POPTR (Photosystem II reaction center protein M OS=Populus trichocarpa OX=3694 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_POPAL (Photosystem II reaction center protein M OS=Populus alba OX=43335 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_PEA (Photosystem II reaction center protein M OS=Pisum sativum OX=3888 GN=psbM PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_OENEH (Photosystem II reaction center protein M OS=Oenothera elata subsp. hookeri OX=85636 GN=psbM PE=3 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_LOTJA (Photosystem II reaction center protein M OS=Lotus japonicus OX=34305 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_GOSHI (Photosystem II reaction center protein M OS=Gossypium hirsutum OX=3635 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_GOSBA (Photosystem II reaction center protein M OS=Gossypium barbadense OX=3634 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
[Close]
BLAST of Vigun08g060300.1 vs. DB:Swiss
Match: PSBM_EUCGG (Photosystem II reaction center protein M OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psbM PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.266e-15
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD 102
            MEVNILAFIATALFILVPTAFLLIIYVKTVS+SD
Sbjct:    1 MEVNILAFIATALFILVPTAFLLIIYVKTVSQSD 34
The following BLAST results are available for this feature:
BLAST of Vigun08g060300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PSBM_PHAVU5.029e-16100.00Photosystem II reaction center protein M OS=Phaseo... [more]
PSBM_SOYBN1.266e-1597.06Photosystem II reaction center protein M OS=Glycin... [more]
PSBM_POPTR1.266e-1597.06Photosystem II reaction center protein M OS=Populu... [more]
PSBM_POPAL1.266e-1597.06Photosystem II reaction center protein M OS=Populu... [more]
PSBM_PEA1.266e-1597.06Photosystem II reaction center protein M OS=Pisum ... [more]
PSBM_OENEH1.266e-1597.06Photosystem II reaction center protein M OS=Oenoth... [more]
PSBM_LOTJA1.266e-1597.06Photosystem II reaction center protein M OS=Lotus ... [more]
PSBM_GOSHI1.266e-1597.06Photosystem II reaction center protein M OS=Gossyp... [more]
PSBM_GOSBA1.266e-1597.06Photosystem II reaction center protein M OS=Gossyp... [more]
PSBM_EUCGG1.266e-1597.06Photosystem II reaction center protein M OS=Eucaly... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007826Photosystem II PsbMTIGRFAMTIGR03038TIGR03038coord: 1..33
e-value: 1.5E-20
score: 70.6
IPR007826Photosystem II PsbMPFAMPF05151PsbMcoord: 1..31
e-value: 1.0E-18
score: 66.8
IPR007826Photosystem II PsbMHAMAPMF_00438PSII_PsbMcoord: 1..34
score: 15.364
IPR037269Photosystem II PsbM superfamilySUPERFAMILY161033Photosystem II reaction center protein M, PsbMcoord: 1..33

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=mRNA; length=105bp
ATGGAAGTAAATATTCTCGCATTTATTGCTACTGCACTGTTTATTCTAGT
TCCTACTGCTTTTTTACTTATAATTTATGTAAAAACGGTAAGTAAAAGTG
ACTAA
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protein sequence of Vigun08g060300.1_Vu_IT97K-499-35_v1.1

>Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=35bp
MEVNILAFIATALFILVPTAFLLIIYVKTVSKSD*
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mRNA from alignment at Vu08:7954440..7954544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=mRNA; length=105bp; location=Sequence derived from: Vu08:7954440..7954544+ (Vigna unguiculata
ATGGAAGTAAATATTCTCGCATTTATTGCTACTGCACTGTTTATTCTAGT
TCCTACTGCTTTTTTACTTATAATTTATGTAAAAACGGTAAGTAAAAGTG
ACTAA
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Coding sequence (CDS) from alignment at Vu08:7954440..7954544+

>Vigun08g060300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g060300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g060300.1; organism=Vigna unguiculata; type=CDS; length=105bp; location=Sequence derived from: Vu08:7954440..7954544+ (Vigna unguiculata
ATGGAAGTAAATATTCTCGCATTTATTGCTACTGCACTGTTTATTCTAGT
TCCTACTGCTTTTTTACTTATAATTTATGTAAAAACGGTAAGTAAAAGTG
ACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007826PSII_PsbM
IPR037269PSII_PsbM_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0019684photosynthesis, light reaction