Vigun08g065400.3

Transcript Overview
NameVigun08g065400.3
Unique NameVigun08g065400.3_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1524
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:9443734..9447388 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR377Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL479Pisum sativum Cameor genome v1aPisum sativum
pvvuL058Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL425Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crvuL542Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
cavuL334Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL338Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL422Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
caivuL0601Cicer arietinum ICC 4958 genome v2Cicer arietinum
anvuL0116Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0317Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0363Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0746Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0747Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1009Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vuzwsR602Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR609Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR616Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR619Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL289Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL269Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL451Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL422Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL391Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vrvvuL449Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL380Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL561Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL566Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR397Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR400Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL302Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL309Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL314Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL392Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL474Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL599Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL325Cicer arietinum
carvuL388Cicer arietinum
ccavuL331Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL425Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR658Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR677Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR695Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR716Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR724Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL228Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL288Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL243Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL302Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL056Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL678Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g065400Vigun08g065400_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g065400.3Vigun08g065400.3_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g065400.3_Vu_IT97K-499-35_v1.1Vigun08g065400.3_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g065400.3.v1.1.CDS.5Vigun08g065400.3.v1.1.CDS.5_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g065400.3.v1.1.CDS.4Vigun08g065400.3.v1.1.CDS.4_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g065400.3.v1.1.CDS.3Vigun08g065400.3.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g065400.3.v1.1.CDS.2Vigun08g065400.3.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g065400.3.v1.1.CDS.1Vigun08g065400.3.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g065400.3.v1.1.three_prime_UTR.1Vigun08g065400.3.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g065400.3.v1.1.five_prime_UTR.1Vigun08g065400.3.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


Homology
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: RZP23_ORYSJ (Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ23 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.386e-47
Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 309
            M+RVYVGNLD RVT R++EDEFRVFGV+RSVWVAR+PPG+AFIDFDDRRDA+DAIR+LDGKNGWRVELS     G G    RSGGSD+KCYECGEPGHFAREC
Sbjct:    1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKNGWRVELSTK--AGSGRGRDRSGGSDMKCYECGEPGHFAREC 101
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: RZ21A_ORYSJ (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.405e-46
Identity = 80/103 (77.67%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 309
            M+RVYVGNLD RVT R+LEDEFRVFGV+RSVWVAR+PPG+AFIDFDDRRDAQDAIR++DGKNGWRVELS N    G G   R G S+ KCYECGE GHFAREC
Sbjct:    1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDGKNGWRVELSRN-ASSGRGGRDRYGSSESKCYECGETGHFAREC 102
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: RZ22A_ARATH (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.434e-46
Identity = 85/111 (76.58%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHN--------XXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 309
            MSRVYVGNLD RVTER+LEDEFR FGVIRSVWVARRPPGYAF+DF+D RDA+DAIRE+DGKNGWRVE SHN           GGG  G   GGSDLKCYECGE GHFAREC
Sbjct:    1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGKNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFAREC 111
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: RSZ22_ARATH (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.017e-45
Identity = 87/114 (76.32%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHN-----------XXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 309
            MSRVYVGNLD RVTER+LEDEFR FGV+RSVWVARRPPGYAF+DF+D RDA+DAIR LDGKNGWRVE SHN            RGGGGG  G  GGSDLKCYECGE GHFAREC
Sbjct:    1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGKNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFAREC 114
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: RSZ21_ORYSJ (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.460e-45
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 309
            M+R+YVGNLD RVT  +LEDEFRVFGV+RSVWVAR+PPG+AFIDFDD+RDA+DA+R+LDGKNGWRVELS N      G   R GGS++KCYECGE GHFAREC
Sbjct:    1 MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDGKNGWRVELSRN--SSSRGGRDRHGGSEMKCYECGETGHFAREC 101
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: RSZ21_ARATH (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 7.383e-42
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSH-NXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 309
            M+RVYVGNLD RVTER+LEDEF+ FGV+R+VWVARRPPGYAF++FDD RDA DAI  LD KNGWRVELSH +  G GGG G R G  D KCYECGE GHFAREC
Sbjct:    1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: SRSF7_HUMAN (Serine/arginine-rich splicing factor 7 OS=Homo sapiens OX=9606 GN=SRSF7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.102e-21
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 SRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGK----NGWRVELSHNXXXXX---XXXXXXXXXXDLKCYECGEPGHFAREC 309
            ++VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS               R    + +CYECGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: SRSF7_BOVIN (Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 GN=SRSF7 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.355e-21
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 SRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGK----NGWRVELSHNXXXXX---XXXXXXXXXXDLKCYECGEPGHFAREC 309
            ++VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS               R    + +CYECGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: SRSF7_MOUSE (Serine/arginine-rich splicing factor 7 OS=Mus musculus OX=10090 GN=Srsf7 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.094e-20
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 SRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGK----NGWRVELSHNXXXXX---XXXXXXXXXXDLKCYECGEPGHFAREC 309
            ++VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS               R    + +CYECGE GH+A +C
Sbjct:   40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148
[Close]
BLAST of Vigun08g065400.3 vs. DB:Swiss
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster OX=7227 GN=Rbp1 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.189e-17
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    7 RVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGK 183
            +VYVGNL S  ++ ++E  F  +G +R+VWVAR PPG+AF++F+DRRDA+DA R LDG 
Sbjct:   12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGT 70
The following BLAST results are available for this feature:
BLAST of Vigun08g065400.3 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RZP23_ORYSJ1.386e-4779.61Serine/arginine-rich splicing factor RSZ23 OS=Oryz... [more]
RZ21A_ORYSJ1.405e-4677.67Serine/arginine-rich splicing factor RSZ21A OS=Ory... [more]
RZ22A_ARATH3.434e-4676.58Serine/arginine-rich splicing factor RSZ22A OS=Ara... [more]
RSZ22_ARATH2.017e-4576.32Serine/arginine-rich splicing factor RSZ22 OS=Arab... [more]
RSZ21_ORYSJ7.460e-4573.79Serine/arginine-rich splicing factor RSZ21 OS=Oryz... [more]
RSZ21_ARATH7.383e-4275.00Serine/arginine-rich splicing factor RSZ21 OS=Arab... [more]
SRSF7_HUMAN5.102e-2144.04Serine/arginine-rich splicing factor 7 OS=Homo sap... [more]
SRSF7_BOVIN5.355e-2144.04Serine/arginine-rich splicing factor 7 OS=Bos taur... [more]
SRSF7_MOUSE1.094e-2044.04Serine/arginine-rich splicing factor 7 OS=Mus musc... [more]
RBP1_DROME1.189e-1755.93RNA-binding protein 1 OS=Drosophila melanogaster O... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 89..105
e-value: 7.9E-5
score: 32.0
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 89..104
e-value: 6.6E-8
score: 32.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 89..104
score: 10.971
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 3..69
e-value: 1.5E-18
score: 77.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..61
e-value: 5.1E-17
score: 61.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 2..73
score: 16.295
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..73
e-value: 6.0E-21
score: 76.4
NoneNo IPR availableGENE3D4.10.60.10coord: 79..138
e-value: 1.1E-7
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..88
NoneNo IPR availableCDDcd12373RRM_SRSF3_likecoord: 3..71
e-value: 9.81677E-35
score: 115.025
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 82..105
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..84

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g065400.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g065400.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g065400.3; organism=Vigna unguiculata; type=mRNA; length=1524bp
ATTCGCCATTTTCCTGTTCAATTTTGATCCTTTCTTTCTCTTCTCCAAAC
CCTGGAGCCTCCTTATTTTAAAATTCTCTTCGATTTTCAAAAATTTCTTA
CAACCCTAAACGACTGTCGCtgattattgattatcgattttcgatttttg
ctctttCGCGAGGTGTTCACCTTTGATATATACTTTTGTTTCGTTTGCGT
CTGTTCTCAGGTTCTTTCTTTAAAGATGTCTCGTGTGTATGTTGGTAACT
TGGATTCACGAGTGACAGAGAGGGATCTTGAAGACGAATTCCGTGTTTTC
GGAGTTATTCGGAGTGTTTGGGTTGCACGAAGGCCACCTGGTTATGCTTT
TATTGACTTTGATGATAGGAGAGATGCTCAGGATGCTATACGTGAATTAG
ATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGGGGTGGA
GGTGGTGGCCGCGGTGGCCGTTCTGGTGGTTCTGATTTGAAATGTTACGA
GTGTGGTGAACCTGGTCATTTTGCCCGTGAATGTCGCTTACGTGGTGGAT
CAGGAAGACGCCGTAGCCGCAGCCCACCCCGATTTCGCAGGAGCCCTAGC
TATGGGCGAAGTCCTCGTGGGCGATCTCCTAGACGCCGCAGCTTATCACC
TCGTGGACGTAGCTACAGCAGGTCACCTCCTTATCGTGGACGTGAGGAGG
TTCCATATGCTAATGGAAATGGCCTTAGGGAACGTCGCAGAAGCAGAAGT
TGATTTTGAAAGTTGGTGTCTGTGATTGTTAAGAGAATAGTGAGATTTTG
TTAAGCTAGTGTTTGTTTAGACTTAAGTGCTAGTCTATTTTGTTGGGCAA
GCCCCTGAGTACTCTTGGATTGGATTAGTTACTTTGTGTCTCAGATTGTG
TTGAATTTGTATTTGCAGAATATTTGTAGTGATATTGCAGGTAATGATCT
TTTTAAAGTTGTTCCTAGTTAAGGAGAGTTCCAAATCTTTCTACACCACA
GTATATGTTTTTATTCTCTGTTAAGATTCTTCTGGTACGGCTTCGTCTTT
CAATGCTTCTCGTCATTTGCTGAGTGGTAATCTCTAGCAGCCCTTCTCTG
TGATCTTCGAAATGCTGAGGACTGGAGATGGCTTCGTGCTCTTCACTTTC
ATAAGCTTTCTCTGCTTGTGATGTGCTTGCCCCAAATTTATCGACGTTAG
TTTTTTTTTGTTTTATTAATTTCTAAGGGGATGATGGCCTGCATCGAATG
CTTCTTGCAGATACTTTTATCTGTTATACAGGTATTGGTCTTCTGAGCTT
TTTGATGACATGTTAATTTAGATATAGGAAGTCTAAGGTCGTAAAGAAAT
ACTTCTAGCTTCAAAATAAATAAGTGAAAGTTGATCTGTTACTTAAATTC
TAATTCCTATGCTTTTTATGAGATTGGACATTATTGTCTCATCATGCTGT
GGCAATTTTAATAATACATACTACATGAAAATAAAAGAAATACTACCCAA
TGTCTGGGTTTTAATCTCTGGCTT
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protein sequence of Vigun08g065400.3_Vu_IT97K-499-35_v1.1

>Vigun08g065400.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g065400.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g065400.3_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=176bp
MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRD
AQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFA
RECRLRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRRRSLSPRGRSYSRS
PPYRGREEVPYANGNGLRERRRSRS*
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mRNA from alignment at Vu08:9443734..9447388-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g065400.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g065400.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g065400.3; organism=Vigna unguiculata; type=mRNA; length=3655bp; location=Sequence derived from: Vu08:9443734..9447388- (Vigna unguiculata
ATTCGCCATTTTCCTGTTCAATTTTGATCCTTTCTTTCTCTTCTCCAAAC
CCTGGAGCCTCCTTATTTTAAAATTCTCTTCGATTTTCAAAAATTTCTTA
CAACCCTAAACGACTGTCGCTGATTATTGATTATCGATTTTCGATTTTTG
CTCTTTCGCGAGGTGTTCACCTTTGATATATACTTTTGTTTCGTTTGCGT
CTGTTCTCAGGTTCTTTCTTTAAAGATGTCTCGTGTGTATGTTGGTAACT
TGGATTCACGAGTGACAGAGAGGGATCTTGAAGACGAATTCCGTGTTTTC
GGAGTTATTCGGAGGTAGCCCCAAGACGTTCTAATTCGTTTCTCAATTTT
GTGGTGGATGCTTCGATATCTCAGTTTTCGTTTTCATATGTAGTCTCTTT
ACTTTAATTTCTGCGAGTTTGAACGTTTTAGGACTATTTTTATGGATTTG
AAAATGCAGGGACAAAAACACAAGATCAAAATTTACCTTTTTATATACGT
TTATTCAAAAAACTATTTTTTTTTGTGACTAATGAACATTATGTTATGTT
TTTGTGTGCAGTGTTTGGGTTGCACGAAGGCCACCTGGTTATGCTTTTAT
TGACTTTGATGATAGGAGAGATGCTCAGGATGCTATACGTGAATTAGATG
GTATGTAGGGTTGTGATTGTTTGATATAATAGAATTAAAATTGAAATGTG
GATATATACGTTTATTTACCACACTTTTCTTATCTGCTAATGTGTTATTG
TTTTTCCCCCGTTTTTTTTCCGGTCGATATGTTGAAGGGTTTTCCTCAAC
TAGCTAGTTAACTCTTCTTTTTGGCCTATGGGGCAAGCAGATGCTGCTCT
CTCTTTCTTCTACTTCTGCCTTGGCCTGCAGTAATGGTTTTTTCTTCGTT
GTTTCTTCGTCAAAGTCTGCTGATTTGTACAGTTTGACTACTTCTACTAC
TGCATGTAAAGAGAATTAAGAATGTGAACACGGGGGATATGCACTGCTAT
CGCGAGCTACACTTCTGTTGCATAATGGGTTTGTTTTATGAGATGTGTTC
TTCTACACTTAACCTATGGGGACCATGTGCGTGCTGCCTCTGTGCTGTAT
ATGTTCCCTGTGGGCAATTTGTGTGCTTCAATAAGTTGTTATCGACCAAT
GAACTTCTGAAAATATTATGGTAACACAATCATTGTCTTTACTGAATGAA
CAAATATTCCCTCGTTCTGCCTTTATGATAATCCTGTATTCCCATGGATA
ATACCATGTTTTAATGTTCATGCATTACTTTTTTTCCTTCCACTTGATAT
TGAAATCATCAAGTAGCTGTTTTCTACTTGGATTTGTTGAAAATTTGAAC
AGTGATGGCTTTTGATATTGTTAACAAACCACTCCTAGTGTAATAAATGT
TGGTTATTGTTATTGTTGCATTTCTTTTGAAGTGCATATCATCTGTATTT
TTTTTTTTGCCACAAGTGATATTCATATCAAACTGTAAATTTATTATTTA
AAGGTAATCTGGGCTTCTGTTTTCATATTACTGCTCTGTCTTTTAATCAT
TACTATGGTCAGCGAAAGGGTTAATTTATTTGTAGGGCTTTGGTGGCGAA
GCTGCATTTTATATATTCTTGTTTAATACCTATCCTTGTTTAAGCTATTG
ACAATGTGATATAGTTTTTGGTGAAGCTGATTCTCCCCAAAGGATTTAAA
CATTAAAGTATCAAATACTGATGCTATTTCCATTCTATCTGCTAAATTTA
GCTACTTGGATTGCAATCATTTTTATCCCTTTTTATTTATTGGGCCTCTG
TTTCTCTTCAATGGAGCAGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCA
CAATTCTAGGGGTGGAGGTGGTGGCCGCGGTGGCCGTTCTGGTGGTTCTG
ATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCCCGTGAATGT
CGCTTACGTGGTGGATCAGGAAGACGCCGTAGCCGCAGCCCACCCCGATT
TCGCAGGAGCCCTAGCTATGGGCGAAGGTTAGATTCCGTTCCTATGTCTT
CTTTTAATCCTGGTTGCAGTGGTATTGGCACTTATATTTTCATGGAGACT
ATTTTGTATTTTATTTGTTCCTAAAAGTTGTTTTGTTGATCCATCTACTT
TCATTTCAGTGATATATCTATGATTGTGGTTTGAAATTTAACTTTTTTTA
TTTGAAGTTATATGTATTTTCTTTAACATTTGGAGATGATATTTTTACAA
TTTTATACACTAGTTTTACATTTATCATTCCTCTTACAGTGGGCTGGATA
TGTTTGTATGTTGTGTTAATATTTTACTTTTTTATCTTTATATTTTTCCT
CACCATTCTTTGGTTGGCTAGGAGTTACAGTCCTCGTGGGCGATCTCCTA
GACGCCGCAGCTTATCACCTCGTGGACGTAGCTACAGCAGGTCACCTCCT
TATCGTGGACGTGAGGAGGTTCCATATGCTAATGGGTAGGTTTCTTCTGT
GTTTATGTAGTTTTTGGTCAAATGTGTTCTTCCATCAAAGTTATTTTATC
AAATTGGGGTAGACCTAATATTTAATACGCACATTTTCTATATTTTGAGA
TGTAAAATGCTTTGGTTAGTTTGTTTTTTGAAACGATATTTTTCTTGAGT
TTGAGTCTGAAGGAAAGAATAGCGATGTTAACTTCTATGTGGCAAAGGGT
AATCATCACGCTTTGGATTTCATCCCCACCTTCCCTTGTTTCTGATTAAC
TAATTCTCGTGTTCATGGATTATACTCTGGTATATTTAAACTTCTGCAAT
CATTATTCGTTGTTTTGTTTTTACTGACATGTGATGCATCTATGCAGAAA
TGGCCTTAGGGAACGTCGCAGAAGCAGAAGTTGATTTTGAAAGTTGGTGT
CTGTGATTGTTAAGAGAATAGTGAGATTTTGTTAAGCTAGTGTTTGTTTA
GACTTAAGTGCTAGTCTATTTTGTTGGGCAAGCCCCTGAGTACTCTTGGA
TTGGATTAGTTACTTTGTGTCTCAGATTGTGTTGAATTTGTATTTGCAGA
ATATTTGTAGTGATATTGCAGGTAATGATCTTTTTAAAGTTGTTCCTAGT
TAAGGAGAGTTCCAAATCTTTCTACACCACAGTATATGTTTTTATTCTCT
GTTAAGATTCTTCTGGTACGGCTTCGTCTTTCAATGCTTCTCGTCATTTG
CTGAGTGGTAATCTCTAGCAGCCCTTCTCTGTGATCTTCGAAATGCTGAG
GACTGGAGATGGCTTCGTGCTCTTCACTTTCATAAGCTTTCTCTGCTTGT
GATGTGCTTGCCCCAAATTTATCGACGTTAGTTTTTTTTTGTTTTATTAA
TTTCTAAGGGGATGATGGCCTGCATCGAATGCTTCTTGCAGATACTTTTA
TCTGTTATACAGGTATTGGTCTTCTGAGCTTTTTGATGACATGTTAATTT
AGATATAGGAAGTCTAAGGTCGTAAAGAAATACTTCTAGCTTCAAAATAA
ATAAGTGAAAGTTGATCTGTTACTTAAATTCTAATTCCTATGCTTTTTAT
GAGATTGGACATTATTGTCTCATCATGCTGTGGCAATTTTAATAATACAT
ACTACATGAAAATAAAAGAAATACTACCCAATGTCTGGGTTTTAATCTCT
GGCTT
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Coding sequence (CDS) from alignment at Vu08:9443734..9447388-

>Vigun08g065400.3_Vu_IT97K-499-35_v1.1 ID=Vigun08g065400.3_Vu_IT97K-499-35_v1.1; Name=Vigun08g065400.3; organism=Vigna unguiculata; type=CDS; length=528bp; location=Sequence derived from: Vu08:9443734..9447388- (Vigna unguiculata
ATGTCTCGTGTGTATGTTGGTAACTTGGATTCACGAGTGACAGAGAGGGA
TCTTGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTG
CACGAAGGCCACCTGGTTATGCTTTTATTGACTTTGATGATAGGAGAGAT
GCTCAGGATGCTATACGTGAATTAGATGGCAAGAATGGTTGGAGGGTTGA
GCTTTCTCACAATTCTAGGGGTGGAGGTGGTGGCCGCGGTGGCCGTTCTG
GTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCC
CGTGAATGTCGCTTACGTGGTGGATCAGGAAGACGCCGTAGCCGCAGCCC
ACCCCGATTTCGCAGGAGCCCTAGCTATGGGCGAAGTCCTCGTGGGCGAT
CTCCTAGACGCCGCAGCTTATCACCTCGTGGACGTAGCTACAGCAGGTCA
CCTCCTTATCGTGGACGTGAGGAGGTTCCATATGCTAATGGAAATGGCCT
TAGGGAACGTCGCAGAAGCAGAAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR036875Znf_CCHC_sf
IPR035979RBD_domain_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding