Vigun08g153300.1

Transcript Overview
NameVigun08g153300.1
Unique NameVigun08g153300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length642
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:32562143..32562784 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL043Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL157Pisum sativum Cameor genome v1aPisum sativum
psvuL165Pisum sativum Cameor genome v1aPisum sativum
psvuL476Pisum sativum Cameor genome v1aPisum sativum
pvvuL059Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL705Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL709Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuL0824Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL1040Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0195Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0428Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0636Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0857Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1203Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL484Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL486Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL703Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR563Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR580Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL088Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL082Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL287Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL266Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL377Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL564Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL575Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR378Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR396Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL128Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL516Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL412Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL413Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL598Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL147Cicer arietinum
carvuL229Cicer arietinum
carvuL516Cicer arietinum
ccavuL061Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL423Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL550Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR676Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR682Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR731Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR740Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvunR437Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g153300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g153300Vigun08g153300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g153300.1Vigun08g153300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g153300.1_Vu_IT97K-499-35_v1.1Vigun08g153300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g153300.1.v1.1.CDS.1Vigun08g153300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: RN115_MOUSE (E3 ubiquitin-protein ligase RNF115 OS=Mus musculus OX=10090 GN=Rnf115 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.318e-11
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:  379 ITVEILPPGETTMIPPS-KGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCR 621
            I  ++L   E T  PP+ K  I SL T T +         C +C ED    EK+  +PCNH FH  CIV WL++  TCP+CR
Sbjct:  189 IVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCR 270
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: RHC2A_ARATH (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.890e-11
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:  421 PPSKGAIDSLN--TFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIP 633
            P SK AI++L      P+  L +   +C++C E+   +     MPCNH++H  CI+ WL I  +CP+CR+ +P
Sbjct:  174 PASKSAIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSCPVCRHELP 246
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.936e-11
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:  400 PGETTMIPPSKGAIDSLNTFTPSSSLREGTQN-CSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIP 633
            P      P SK AID+L T   +  + +   N C++CM++      +  MPC HVFH  C++ WL++  +CP+CR+ +P
Sbjct:  183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: RN115_HUMAN (E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens OX=9606 GN=RNF115 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 1.099e-10
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:  379 ITVEILPPGETTMIPPS-KGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCR 621
            I  ++L   E T  PP+ K  I SL T T +    +    C +C ED    E++  +PCNH FH  CIV WL++  TCP+CR
Sbjct:  188 IVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCR 269
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.578e-10
Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1 
Query:  403 GETTMIPPSKGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIP 633
            G +   P SK AI+SL     S    +   NC++C E      +   MPC H+FH  CIV WL I  +CP+CR+ +P
Sbjct:  184 GRSGNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFELP 260
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.122e-10
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:  403 GETTMIPPSKGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIP 633
            G +   P SK AI+SL     S        NC++C E      +   MPC H+FH  CIV WL I  +CP+CR+ +P
Sbjct:  168 GRSGNPPASKSAIESLPRVEISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELP 244
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.363e-10
Identity = 27/70 (38.57%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:  421 PPSKGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPI 630
            P +K AI++L TF  SSS  E    C++C + +   E    +PC H +H  CIV WL    +CP+CR+ +
Sbjct:  232 PAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQL 301
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: RHC1A_ARATH (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.178e-10
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = 1 
Query:  388 EILPPGETTMIPPS--KGAIDSLNTFT-PSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIP 633
            E L  G T   PP   + AID+L T       LR    NC +C ++     +   MPCNH++H  CIV WL    +CP+CR  +P
Sbjct:  151 EQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELP 235
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: MPSR1_ARATH (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.162e-9
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 1 
Query:  391 ILPPGETTMIPPSKGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIP 633
            +L   E    P SK +ID++    P   +      C IC+E+    E +  MPC H FH  CI +WL    +CP+CRY +P
Sbjct:   82 LLESREEGRPPASKASIDAM----PIVEIDGCEGECVICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMP 158
[Close]
BLAST of Vigun08g153300.1 vs. DB:Swiss
Match: SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.858e-9
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:  400 PGETTMIPPSKGAIDSLNTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKISRTCPLCRYPIP 633
            P      P  K A+++L    P+  + E   +CS+C++DL    +   MPC H FH  CI+ WL++  +CP+CR+ +P
Sbjct:  172 PSRNGTPPAKKEAVEAL----PTVKIEE-VVSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFELP 244
The following BLAST results are available for this feature:
BLAST of Vigun08g153300.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RN115_MOUSE3.318e-1141.46E3 ubiquitin-protein ligase RNF115 OS=Mus musculus... [more]
RHC2A_ARATH5.890e-1136.99Probable E3 ubiquitin-protein ligase RHC2A OS=Arab... [more]
RNG1L_ARATH7.936e-1135.44E3 ubiquitin-protein ligase RING1-like OS=Arabidop... [more]
RN115_HUMAN1.099e-1040.24E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens... [more]
RDUF1_ARATH1.578e-1038.96E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis t... [more]
RDUF2_ARATH3.122e-1038.96E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis t... [more]
CIP8_ARATH3.363e-1038.57E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RHC1A_ARATH4.178e-1037.65Probable E3 ubiquitin-protein ligase RHC1A OS=Arab... [more]
MPSR1_ARATH1.162e-935.80E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis t... [more]
SIRP1_ORYSJ1.858e-934.62E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa ... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 166..206
e-value: 1.4E-6
score: 37.9
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 165..207
e-value: 2.0E-12
score: 47.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 166..207
score: 12.814
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 136..212
e-value: 1.1E-18
score: 68.7
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 166..207
e-value: 8.75428E-16
score: 66.5565
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 146..211

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g153300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g153300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g153300.1; organism=Vigna unguiculata; type=mRNA; length=642bp
ATGGCAACTCTAGGAAGAATAAGAGGGTACGACGTTTGGTTGAGAACAGG
AGATGATGAAGTGAAGGTCAAAGTGAGTGACATTTTAAGGATTGATGTAA
CTATTGGTGTTCGATATATACATTCTGTTCATAGCATTGAAACAACCTTA
TTAAAAGAGTCGATATCCATTAGCTGTCAGAATTTCATCCAAAATAATCA
AGATTTCTTAAGGAGCTTCATGTTCGACCCACGCTGCTCTACCTCCTTCA
GTCCAGCAAGTATTGATCTTTATCGTTTGTCAGAAGAAATTGTTGATATG
AGTATAAATATCATAGAATTTGGATGTGATTCAGAGTATGTAGATTCAAA
ATGTCAGGAATTACCTTTGAAATTTGACATCACGGTGGAAATACTTCCTC
CAGGAGAAACAACAATGATTCCACCATCTAAAGGAGCCATTGATTCCCTC
AACACGTTCACACCTTCATCTTCTTTAAGAGAGGGAACTCAGAACTGCAG
CATTTGCATGGAAGATTTGTGTTTCAGAGAGAAGTTATTGTCGATGCCTT
GTAACCACGTTTTCCATCATCTGTGTATTGTAGAGTGGCTCAAGATTAGT
CGCACTTGTCCCTTATGTCGTTATCCTATACCTCATTTGTAA
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protein sequence of Vigun08g153300.1_Vu_IT97K-499-35_v1.1

>Vigun08g153300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g153300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g153300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=214bp
MATLGRIRGYDVWLRTGDDEVKVKVSDILRIDVTIGVRYIHSVHSIETTL
LKESISISCQNFIQNNQDFLRSFMFDPRCSTSFSPASIDLYRLSEEIVDM
SINIIEFGCDSEYVDSKCQELPLKFDITVEILPPGETTMIPPSKGAIDSL
NTFTPSSSLREGTQNCSICMEDLCFREKLLSMPCNHVFHHLCIVEWLKIS
RTCPLCRYPIPHL*
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mRNA from alignment at Vu08:32562143..32562784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g153300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g153300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g153300.1; organism=Vigna unguiculata; type=mRNA; length=642bp; location=Sequence derived from: Vu08:32562143..32562784- (Vigna unguiculata
ATGGCAACTCTAGGAAGAATAAGAGGGTACGACGTTTGGTTGAGAACAGG
AGATGATGAAGTGAAGGTCAAAGTGAGTGACATTTTAAGGATTGATGTAA
CTATTGGTGTTCGATATATACATTCTGTTCATAGCATTGAAACAACCTTA
TTAAAAGAGTCGATATCCATTAGCTGTCAGAATTTCATCCAAAATAATCA
AGATTTCTTAAGGAGCTTCATGTTCGACCCACGCTGCTCTACCTCCTTCA
GTCCAGCAAGTATTGATCTTTATCGTTTGTCAGAAGAAATTGTTGATATG
AGTATAAATATCATAGAATTTGGATGTGATTCAGAGTATGTAGATTCAAA
ATGTCAGGAATTACCTTTGAAATTTGACATCACGGTGGAAATACTTCCTC
CAGGAGAAACAACAATGATTCCACCATCTAAAGGAGCCATTGATTCCCTC
AACACGTTCACACCTTCATCTTCTTTAAGAGAGGGAACTCAGAACTGCAG
CATTTGCATGGAAGATTTGTGTTTCAGAGAGAAGTTATTGTCGATGCCTT
GTAACCACGTTTTCCATCATCTGTGTATTGTAGAGTGGCTCAAGATTAGT
CGCACTTGTCCCTTATGTCGTTATCCTATACCTCATTTGTAA
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Coding sequence (CDS) from alignment at Vu08:32562143..32562784-

>Vigun08g153300.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g153300.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g153300.1; organism=Vigna unguiculata; type=CDS; length=642bp; location=Sequence derived from: Vu08:32562143..32562784- (Vigna unguiculata
ATGGCAACTCTAGGAAGAATAAGAGGGTACGACGTTTGGTTGAGAACAGG
AGATGATGAAGTGAAGGTCAAAGTGAGTGACATTTTAAGGATTGATGTAA
CTATTGGTGTTCGATATATACATTCTGTTCATAGCATTGAAACAACCTTA
TTAAAAGAGTCGATATCCATTAGCTGTCAGAATTTCATCCAAAATAATCA
AGATTTCTTAAGGAGCTTCATGTTCGACCCACGCTGCTCTACCTCCTTCA
GTCCAGCAAGTATTGATCTTTATCGTTTGTCAGAAGAAATTGTTGATATG
AGTATAAATATCATAGAATTTGGATGTGATTCAGAGTATGTAGATTCAAA
ATGTCAGGAATTACCTTTGAAATTTGACATCACGGTGGAAATACTTCCTC
CAGGAGAAACAACAATGATTCCACCATCTAAAGGAGCCATTGATTCCCTC
AACACGTTCACACCTTCATCTTCTTTAAGAGAGGGAACTCAGAACTGCAG
CATTTGCATGGAAGATTTGTGTTTCAGAGAGAAGTTATTGTCGATGCCTT
GTAACCACGTTTTCCATCATCTGTGTATTGTAGAGTGGCTCAAGATTAGT
CGCACTTGTCCCTTATGTCGTTATCCTATACCTCATTTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD