Vigun08g210200.1

Transcript Overview
NameVigun08g210200.1
Unique NameVigun08g210200.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length450
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:37225083..37225532 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL271Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
vuvuL346Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL166Pisum sativum Cameor genome v1aPisum sativum
pvvuL557Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL701Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL135Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0770Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL0814Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0195Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0636Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1011Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1203Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL071Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL199Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL706Vigna angularis Jingnong 6 genome v1.1Vigna angularis
tifvuL088Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL081Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL286Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL267Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vssvuL383Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL825Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL828Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR389Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR398Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
avjvuL120Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL598Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL138Cicer arietinum
carvuL386Cicer arietinum
ccavuL163Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL423Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccavuL658Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR678Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR693Vigna umbellata FF25 genome v1.0Vigna umbellata
vasvuL301Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL459Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR447Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
LR48_mrnaVigan09g095800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Va09G035790.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
jg239.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Phvul.006G057500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.1g227160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigan.03G018300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Psat2g007400.1Pisum sativum Cameor genome v1aPisum sativum
Vum_03G00147.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.008G279100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_09723Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
LR48_mrnaVigan07g011600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_11633Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-KK1_006099Cajanus cajan Asha genome v1.0Cajanus cajan
Vigan.05G200000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.1g280880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cc_v2.0_12646.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr08.832Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun06g063700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun06g063700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun08g210200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g210200Vigun08g210200_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g210200.1Vigun08g210200.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g210200.1_Vu_IT97K-499-35_v1.1Vigun08g210200.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g210200.1.v1.1.CDS.1Vigun08g210200.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g210200.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..75

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g210200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210200.1; organism=Vigna unguiculata; type=mRNA; length=450bp
ATGTTTGAAGCAGAGTTTCTGGGAGTTGTAGTTACAGCCCTTTGGTTATT
ATCAGAGTCCAAATTTGACCTTAAAGCTCATGGGGATGCATTAGCTGATG
CCATTCCAACCCCAACAACTTCTTGTGAGAACTGTGCATCACCACCACCT
TCTGGTTACCCTATATATGGTGTCTTTcctcctcctcctcctccaccacc
accaccaccacACAAGACAGGAAAAGGCAAATCCAAGTGTCCTCCAGCTG
CAAGTGTTCAGTGTTGTAGCCCTCCAGCTCCTTACACTTTTGGTTATGGT
TATGGCTATGGAACACCAAATCCTTATTTTACCCCTCCTAATCCCTACAC
CTACGTGCCTTATGGGAAAGCTCGAGGCCCTACATCTATGATTCTGCCAT
TTCTAACTCCCCTTATCACTCTTTTTTCTTCTTTTGTATTTCTCCTCTGA
back to top

protein sequence of Vigun08g210200.1_Vu_IT97K-499-35_v1.1

>Vigun08g210200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210200.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=150bp
MFEAEFLGVVVTALWLLSESKFDLKAHGDALADAIPTPTTSCENCASPPP
SGYPIYGVFPPPPPPPPPPPHKTGKGKSKCPPAASVQCCSPPAPYTFGYG
YGYGTPNPYFTPPNPYTYVPYGKARGPTSMILPFLTPLITLFSSFVFLL*
back to top

mRNA from alignment at Vu08:37225083..37225532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g210200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210200.1; organism=Vigna unguiculata; type=mRNA; length=450bp; location=Sequence derived from: Vu08:37225083..37225532- (Vigna unguiculata
ATGTTTGAAGCAGAGTTTCTGGGAGTTGTAGTTACAGCCCTTTGGTTATT
ATCAGAGTCCAAATTTGACCTTAAAGCTCATGGGGATGCATTAGCTGATG
CCATTCCAACCCCAACAACTTCTTGTGAGAACTGTGCATCACCACCACCT
TCTGGTTACCCTATATATGGTGTCTTTCCTCCTCCTCCTCCTCCACCACC
ACCACCACCACACAAGACAGGAAAAGGCAAATCCAAGTGTCCTCCAGCTG
CAAGTGTTCAGTGTTGTAGCCCTCCAGCTCCTTACACTTTTGGTTATGGT
TATGGCTATGGAACACCAAATCCTTATTTTACCCCTCCTAATCCCTACAC
CTACGTGCCTTATGGGAAAGCTCGAGGCCCTACATCTATGATTCTGCCAT
TTCTAACTCCCCTTATCACTCTTTTTTCTTCTTTTGTATTTCTCCTCTGA
back to top

Coding sequence (CDS) from alignment at Vu08:37225083..37225532-

>Vigun08g210200.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g210200.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g210200.1; organism=Vigna unguiculata; type=CDS; length=450bp; location=Sequence derived from: Vu08:37225083..37225532- (Vigna unguiculata
ATGTTTGAAGCAGAGTTTCTGGGAGTTGTAGTTACAGCCCTTTGGTTATT
ATCAGAGTCCAAATTTGACCTTAAAGCTCATGGGGATGCATTAGCTGATG
CCATTCCAACCCCAACAACTTCTTGTGAGAACTGTGCATCACCACCACCT
TCTGGTTACCCTATATATGGTGTCTTTCCTCCTCCTCCTCCTCCACCACC
ACCACCACCACACAAGACAGGAAAAGGCAAATCCAAGTGTCCTCCAGCTG
CAAGTGTTCAGTGTTGTAGCCCTCCAGCTCCTTACACTTTTGGTTATGGT
TATGGCTATGGAACACCAAATCCTTATTTTACCCCTCCTAATCCCTACAC
CTACGTGCCTTATGGGAAAGCTCGAGGCCCTACATCTATGATTCTGCCAT
TTCTAACTCCCCTTATCACTCTTTTTTCTTCTTTTGTATTTCTCCTCTGA
back to top