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Transcript Overview
Name | Vigun08g215900.1 |
Unique Name | Vigun08g215900.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 928 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g215900.1 | Vigun08g215900.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun08g215900.1_Vu_IT97K-499-35_v1.1 | Vigun08g215900.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g215900.1.v1.1.five_prime_UTR.1 | Vigun08g215900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Vigun08g215900.1.v1.1.five_prime_UTR.2 | Vigun08g215900.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g215900.1.v1.1.CDS.1 | Vigun08g215900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g215900.1.v1.1.CDS.2 | Vigun08g215900.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun08g215900.1.v1.1.CDS.3 | Vigun08g215900.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun08g215900.1.v1.1.three_prime_UTR.1 | Vigun08g215900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1; organism=Vigna unguiculata; type=mRNA; length=928bp TGGCGCGTGTCTTGTGATGCAGAGGAGTCGCGTGGTGAGTGGCAGACGCG TTAACACGAAGCATGCAATTCTGAGCTGAAGAAAAAAGGCTtctccctct ttcttctgttctctctctctgacttcccacaccacaccactcactttctc tctccttctcttcatgtcttctttctTACATCAAACGTAGATTTTCTTTT TTTCTTTTTTAATCTTTACCCGAGTTTTACTCTCGCAAAGTGGTTTATTT GGGGAAGTTTGATTTGGGAAATGAACAAAGGACAGTCACCGGAGCCTCTT GATTTCTTCATCTGGACTGTTGAGGATGTTGGCTTGTGGTTGGAGACTAT AAATCTTGGTAGTTACCGCCAAATTTTTAAAGAAAATGGTGTCAATGGAG AATATCTGGAAGGCATGTCCATGTTTACGACTGAACAGATCCTACGTTTT ATAAGACGTTGCCACATGAAGTGGGGAGACTTCATCACATTGTGCAAAGA ATTGAGACGGATTAAAGTGGCTTGTCTGAAAGGGGAGCAGAAGGTGCGGC GGCCGTGGTGGGCACCGGCATGCCTATCCACAGTGTTCTTAAAGGTTGCA AAATCCAACAGACAATCAAGAGTTGTTTCCCTGAAGCTGGAACCATGATA CAAAAAATCTCTCCAACTGTACCAGTGTACGTATAGCAAATTTCTTTTTG CCTAGAAAACAAAAGATAGGAAAGAACTTTTTCTAGCCCTTTTTATATAT ATATATATTTTTTTCTTTGGATTCCAAAACCTGGTTGTTTTTTCTCCTCT GGAGAACTGTTATGTTGTAGAAGATCCTTGTGCACTAATTTCCAGTGCTG TGTAATTATGTATTCTATTATATGTGAACGAAAATACTATATATGCCGTT TCTCTTCATCTTCTAATACCCCATATTT back to topprotein sequence of Vigun08g215900.1_Vu_IT97K-499-35_v1.1 >Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=126bp MNKGQSPEPLDFFIWTVEDVGLWLETINLGSYRQIFKENGVNGEYLEGMS MFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPA CLSTVFLKVAKSNRQSRVVSLKLEP* back to topmRNA from alignment at Vu08:37660186..37663682+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1; organism=Vigna unguiculata; type=mRNA; length=3497bp; location=Sequence derived from: Vu08:37660186..37663682+ (Vigna unguiculata TGGCGCGTGTCTTGTGATGCAGAGGAGTCGCGTGGTGAGTGGCAGACGCG
TTAACACGAAGCATGCAATTCTGAGCTGAAGAAAAAAGGCTTCTCCCTCT
TTCTTCTGTTCTCTCTCTCTGACTTCCCACACCACACCACTCACTTTCTC
TCTCCTTCTCTTCATGTCTTCTTTCTTACATCAAACGTAGATTTTCTTTT
TTTCTTTTTTAATCTTTACCCGAGTTTTACTCTCGCAAAGTGGTAAGCAA
AATATTTGGTCTATATTATTTATTTATTTATTTTGGATTTCTCCTTTAAT
TCAATGAATGGCCCTTGAGATCTTGCAATTGGAGCTTCCATTTTTGCTGC
TTGTCCAATATTCTTATTCTCAGATCGACCCCTTTTCGGTTACTTAACTG
GGGAAAGTTACTCATGAATTTTCTCCACTAAAAATGTTATTTTTTTTTGG
TGGGGGGGTTTTGATTAGCTGTTTGACCTCTGTTCAGGTTTATTTGGGGA
AGTTTGATTTGGGAAATGAACAAAGGACAGTCACCGGAGCCTCTTGATTT
CTTCATCTGGACTGTTGAGGTTAATCATTTCTCTCCCTTGTTCAATCGAT
GGACTTATTTTCATTTGTTATTTACTTTCTAATAACAAAAACTTTTCCCT
GTGATCTCCTTGATGTGATTTGCTCTTTTAACATGTAATTAGGTTTCTTG
CAACAGTTAGTTTAACTATTGTTGGGTTCATAGCTTGAACTTTCTCCATG
GTAGTCTTTTTGTGATGCTCATTTGTAAAAAGTAAAAGTGGAGATTTAAC
TTTGTTCTCATGTGTCGGAAAATTTGAACACAGTGTTGTCTGATCAAGTT
GGAAATTTGGTGGATGATGTTCAAGTCCTTCTCAGTTTGGAAATAGTTGG
CTAATCAAGCTTGTGCGTGCATTATTTCATTTAATTCTGAATCTCATCTT
CTTTCTATTCTTGTCCCAAGTTGTCTGGTATTTACATATAGTCTTCAATT
CTTGCCAGATAATTTTGTTCAATTCTTCAGTTTGACATTAGCAGTTTCTA
AGATCATTTCAGAAGTGAGGGGTTTAATATTCTCTCGAGAAAATAATAGA
TTACATCGAATGCTTACCTACCCTTTTTTGCAGCACACCATAGGTGTAAA
TCTTCGTCTGATGAGTTCCCACTGCAAAGCTATATTCTTCTTTCTATGGT
CTTTGGATTTCTGGACTTTGTTGTTGCAACTATGTTTTGGAAACATAGCA
TATGAAACTAGATTGAAATATTATTTTTATGTTGATTATGCCCTTAGTCA
ATGTTCCTCTTTCAGTGGTTTATCCTTGTTGTCAGTTACTCCGTTAAGTA
TGTTATTAAGCCCATACATATTAAGTGTAAACACTATAGATAACAGGGTA
TTATCTCGTAGTTCTCCTTTTATGTGTGTATCAAGGTCCCAAGATTGCAG
TGTTATTTTACTCATGTATTGTGTATGTTTCTAGTTATGTGTTGTCTACA
TGCTTATTCAGCACTGTCTTACAGGTCTAGACTATTTAACGTAATTGATG
CACAGTTAATAACTGATATTATCTAGTCTGGAATGCTTCCACATGTTTTC
TTTTGATTCATTGTTGCTAACTGCATGATGAATTGTGAAAATTACACAAG
AGTTATGTTGAGAACGATCTAAGCTTGGTGAATATAAAATCTGGGTGCTG
TTACGCAAGTATATCATATAGTGCATCTCCATAGCAGAGTCCAAAATGTA
ACCGATCATTTAAACTAACATCTGAATTCCTGCTATCTCGTGTGTTTTAC
CAGGATGTTGGCTTGTGGTTGGAGACTATAAATCTTGGTAGTTACCGCCA
AATTTTTAAAGAAAATGGTGTCAATGGAGAATATCTGGAAGGCATGTCCA
TGTTTACGACTGAACAGATCCTACGTTTTATAAGACGTTGCCACATGAAG
TGGGGAGACTTCATCACATTGTGCAAAGAATTGAGACGGATTAAAGGTTT
CTCTCTCTCTCTCTCTCTCTTCTTCCCCTTTTAAACAGTAAACAGACAAA
CACTTGCCAATAAACTCTCATTGAACATTTTCATTTTTACCTATCTGTTT
TGTGCTCCTCCCCTGGTGAGGCATGATCATTGATGTTGTCACAATCATTT
TCCGCTATTTGAACAATCTATAAGGAAACATGGATATACTAGAAGAATGA
TTAAAGTAGGGGTCTGGTATTGCTGTATTAGTGTGAGATATATCTAGAAT
TTTGATAACTTGTCTATTAGTTATTGGTACTGCTGTCATTTCATCACAGA
CATCAACCATTAAAGGGTCTCGTCATAGCACATAATTCTCTATATTGTGC
AGCATCAAGACAAGCTGTGAATTACATTTTCTAAAGAGTACTCCTTCCTT
ATATATATGAGTTTTAAACTCTAAAATCATTTGTTTTCACATTCTTCTTT
TCAAATTAGTGTTCCCGTTAAACATTTTTCTTTAATACATTAAACACTAA
ATATCATGGGTTTCTTCTCATTTAGTGCCTCTAAATATAAAGATTTTTCT
ACCTTCAAATGGAAAAAGGAGAGTTAAATTATATGCATTGACAGTTTTCA
CACAGATATCTAATAGGAATTTATCTATGATCACATCATTCTATTTATTA
GCATGATCTGATGACATGCTAAATTCCCATCGAATGCTTATGTTAAAAAA
TTTACACTGAAAATACAGTAAAACTCCAAAAAACCAAACAGAAGACTGTG
TCAGAGGAATCATTTTGGTAACAAAGAATGGCTGAATCAAATTTGAAATT
AGTGATTTTTTGAAGGACCAAATGATATCATTATACAGGGTGAAGTCATC
CAGAACATGATTGTCAAGACGTCCATTCCTAAACATGTGACATGTTTATA
TATAAGGAGACATGAAATGTACATATGCCTCTTGTGTTTGTTTTGTTGTG
ACTTTTCTTGCAAGATGATATATTCCTGTGATAACACTAAAAGAGAGAAG
TGGGTGTTTACCCCAGTAAAGTTGAAGAAAATGGCTTTATCTGTTACCTG
CTCCTAACCTCTGAAAGGCCATGTTGGTGTCTGTAGTGGCTTGTCTGAAA
GGGGAGCAGAAGGTGCGGCGGCCGTGGTGGGCACCGGCATGCCTATCCAC
AGTGTTCTTAAAGGTTGCAAAATCCAACAGACAATCAAGAGTTGTTTCCC
TGAAGCTGGAACCATGATACAAAAAATCTCTCCAACTGTACCAGTGTACG
TATAGCAAATTTCTTTTTGCCTAGAAAACAAAAGATAGGAAAGAACTTTT
TCTAGCCCTTTTTATATATATATATATTTTTTTCTTTGGATTCCAAAACC
TGGTTGTTTTTTCTCCTCTGGAGAACTGTTATGTTGTAGAAGATCCTTGT
GCACTAATTTCCAGTGCTGTGTAATTATGTATTCTATTATATGTGAACGA
AAATACTATATATGCCGTTTCTCTTCATCTTCTAATACCCCATATTT back to topCoding sequence (CDS) from alignment at Vu08:37660186..37663682+ >Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1; organism=Vigna unguiculata; type=CDS; length=378bp; location=Sequence derived from: Vu08:37660186..37663682+ (Vigna unguiculata ATGAACAAAGGACAGTCACCGGAGCCTCTTGATTTCTTCATCTGGACTGT TGAGGATGTTGGCTTGTGGTTGGAGACTATAAATCTTGGTAGTTACCGCC AAATTTTTAAAGAAAATGGTGTCAATGGAGAATATCTGGAAGGCATGTCC ATGTTTACGACTGAACAGATCCTACGTTTTATAAGACGTTGCCACATGAA GTGGGGAGACTTCATCACATTGTGCAAAGAATTGAGACGGATTAAAGTGG CTTGTCTGAAAGGGGAGCAGAAGGTGCGGCGGCCGTGGTGGGCACCGGCA TGCCTATCCACAGTGTTCTTAAAGGTTGCAAAATCCAACAGACAATCAAG AGTTGTTTCCCTGAAGCTGGAACCATGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
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