Vigun08g215900.1

Transcript Overview
NameVigun08g215900.1
Unique NameVigun08g215900.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length928
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu08supercontigVu08:37660186..37663682 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuL166Pisum sativum Cameor genome v1aPisum sativum
crvuL191Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL701Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
caivuL0194Cicer arietinum ICC 4958 genome v2Cicer arietinum
ccvuL0770Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0195Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0636Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1203Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vuzwsR570Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL088Vicia faba cv. Tiffany genome v1.0Vicia faba
vrvvuL447Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL828Vicia sativa cv. Studenica genome v1.0Vicia sativa
canvuL128Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL595Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL598Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL138Cicer arietinum
ccavuL423Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR678Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR736Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL286Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL287Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL298Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL301Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL616Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR456Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Psat02G0009900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vfaba.Tiffany.R1.1g230360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Phvul.008G284800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-TanjilR_19140Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg139.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_03174.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
PvulFLAVERTChr08.1780Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004491513.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
XM_058886806.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigst.03G008200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_12699.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cr_03291.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Va07G001730.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014647256.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.03G011900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_03G00094.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-KK1_006165Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun08g215900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun08g215900Vigun08g215900_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g215900.1Vigun08g215900.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun08g215900.1_Vu_IT97K-499-35_v1.1Vigun08g215900.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g215900.1.v1.1.five_prime_UTR.1Vigun08g215900.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun08g215900.1.v1.1.five_prime_UTR.2Vigun08g215900.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g215900.1.v1.1.CDS.1Vigun08g215900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g215900.1.v1.1.CDS.2Vigun08g215900.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun08g215900.1.v1.1.CDS.3Vigun08g215900.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun08g215900.1.v1.1.three_prime_UTR.1Vigun08g215900.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun08g215900.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainPFAMPF07647SAM_2coord: 15..51
e-value: 5.1E-8
score: 32.9
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 15..50
score: 11.408
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 12..85
e-value: 3.2E-9
score: 39.0
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 6..85

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1; organism=Vigna unguiculata; type=mRNA; length=928bp
TGGCGCGTGTCTTGTGATGCAGAGGAGTCGCGTGGTGAGTGGCAGACGCG
TTAACACGAAGCATGCAATTCTGAGCTGAAGAAAAAAGGCTtctccctct
ttcttctgttctctctctctgacttcccacaccacaccactcactttctc
tctccttctcttcatgtcttctttctTACATCAAACGTAGATTTTCTTTT
TTTCTTTTTTAATCTTTACCCGAGTTTTACTCTCGCAAAGTGGTTTATTT
GGGGAAGTTTGATTTGGGAAATGAACAAAGGACAGTCACCGGAGCCTCTT
GATTTCTTCATCTGGACTGTTGAGGATGTTGGCTTGTGGTTGGAGACTAT
AAATCTTGGTAGTTACCGCCAAATTTTTAAAGAAAATGGTGTCAATGGAG
AATATCTGGAAGGCATGTCCATGTTTACGACTGAACAGATCCTACGTTTT
ATAAGACGTTGCCACATGAAGTGGGGAGACTTCATCACATTGTGCAAAGA
ATTGAGACGGATTAAAGTGGCTTGTCTGAAAGGGGAGCAGAAGGTGCGGC
GGCCGTGGTGGGCACCGGCATGCCTATCCACAGTGTTCTTAAAGGTTGCA
AAATCCAACAGACAATCAAGAGTTGTTTCCCTGAAGCTGGAACCATGATA
CAAAAAATCTCTCCAACTGTACCAGTGTACGTATAGCAAATTTCTTTTTG
CCTAGAAAACAAAAGATAGGAAAGAACTTTTTCTAGCCCTTTTTATATAT
ATATATATTTTTTTCTTTGGATTCCAAAACCTGGTTGTTTTTTCTCCTCT
GGAGAACTGTTATGTTGTAGAAGATCCTTGTGCACTAATTTCCAGTGCTG
TGTAATTATGTATTCTATTATATGTGAACGAAAATACTATATATGCCGTT
TCTCTTCATCTTCTAATACCCCATATTT
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protein sequence of Vigun08g215900.1_Vu_IT97K-499-35_v1.1

>Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=126bp
MNKGQSPEPLDFFIWTVEDVGLWLETINLGSYRQIFKENGVNGEYLEGMS
MFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPA
CLSTVFLKVAKSNRQSRVVSLKLEP*
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mRNA from alignment at Vu08:37660186..37663682+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1; organism=Vigna unguiculata; type=mRNA; length=3497bp; location=Sequence derived from: Vu08:37660186..37663682+ (Vigna unguiculata
TGGCGCGTGTCTTGTGATGCAGAGGAGTCGCGTGGTGAGTGGCAGACGCG TTAACACGAAGCATGCAATTCTGAGCTGAAGAAAAAAGGCTTCTCCCTCT TTCTTCTGTTCTCTCTCTCTGACTTCCCACACCACACCACTCACTTTCTC TCTCCTTCTCTTCATGTCTTCTTTCTTACATCAAACGTAGATTTTCTTTT TTTCTTTTTTAATCTTTACCCGAGTTTTACTCTCGCAAAGTGGTAAGCAA AATATTTGGTCTATATTATTTATTTATTTATTTTGGATTTCTCCTTTAAT TCAATGAATGGCCCTTGAGATCTTGCAATTGGAGCTTCCATTTTTGCTGC TTGTCCAATATTCTTATTCTCAGATCGACCCCTTTTCGGTTACTTAACTG GGGAAAGTTACTCATGAATTTTCTCCACTAAAAATGTTATTTTTTTTTGG TGGGGGGGTTTTGATTAGCTGTTTGACCTCTGTTCAGGTTTATTTGGGGA AGTTTGATTTGGGAAATGAACAAAGGACAGTCACCGGAGCCTCTTGATTT CTTCATCTGGACTGTTGAGGTTAATCATTTCTCTCCCTTGTTCAATCGAT GGACTTATTTTCATTTGTTATTTACTTTCTAATAACAAAAACTTTTCCCT GTGATCTCCTTGATGTGATTTGCTCTTTTAACATGTAATTAGGTTTCTTG CAACAGTTAGTTTAACTATTGTTGGGTTCATAGCTTGAACTTTCTCCATG GTAGTCTTTTTGTGATGCTCATTTGTAAAAAGTAAAAGTGGAGATTTAAC TTTGTTCTCATGTGTCGGAAAATTTGAACACAGTGTTGTCTGATCAAGTT GGAAATTTGGTGGATGATGTTCAAGTCCTTCTCAGTTTGGAAATAGTTGG CTAATCAAGCTTGTGCGTGCATTATTTCATTTAATTCTGAATCTCATCTT CTTTCTATTCTTGTCCCAAGTTGTCTGGTATTTACATATAGTCTTCAATT CTTGCCAGATAATTTTGTTCAATTCTTCAGTTTGACATTAGCAGTTTCTA AGATCATTTCAGAAGTGAGGGGTTTAATATTCTCTCGAGAAAATAATAGA TTACATCGAATGCTTACCTACCCTTTTTTGCAGCACACCATAGGTGTAAA TCTTCGTCTGATGAGTTCCCACTGCAAAGCTATATTCTTCTTTCTATGGT CTTTGGATTTCTGGACTTTGTTGTTGCAACTATGTTTTGGAAACATAGCA TATGAAACTAGATTGAAATATTATTTTTATGTTGATTATGCCCTTAGTCA ATGTTCCTCTTTCAGTGGTTTATCCTTGTTGTCAGTTACTCCGTTAAGTA TGTTATTAAGCCCATACATATTAAGTGTAAACACTATAGATAACAGGGTA TTATCTCGTAGTTCTCCTTTTATGTGTGTATCAAGGTCCCAAGATTGCAG TGTTATTTTACTCATGTATTGTGTATGTTTCTAGTTATGTGTTGTCTACA TGCTTATTCAGCACTGTCTTACAGGTCTAGACTATTTAACGTAATTGATG CACAGTTAATAACTGATATTATCTAGTCTGGAATGCTTCCACATGTTTTC TTTTGATTCATTGTTGCTAACTGCATGATGAATTGTGAAAATTACACAAG AGTTATGTTGAGAACGATCTAAGCTTGGTGAATATAAAATCTGGGTGCTG TTACGCAAGTATATCATATAGTGCATCTCCATAGCAGAGTCCAAAATGTA ACCGATCATTTAAACTAACATCTGAATTCCTGCTATCTCGTGTGTTTTAC CAGGATGTTGGCTTGTGGTTGGAGACTATAAATCTTGGTAGTTACCGCCA AATTTTTAAAGAAAATGGTGTCAATGGAGAATATCTGGAAGGCATGTCCA TGTTTACGACTGAACAGATCCTACGTTTTATAAGACGTTGCCACATGAAG TGGGGAGACTTCATCACATTGTGCAAAGAATTGAGACGGATTAAAGGTTT CTCTCTCTCTCTCTCTCTCTTCTTCCCCTTTTAAACAGTAAACAGACAAA CACTTGCCAATAAACTCTCATTGAACATTTTCATTTTTACCTATCTGTTT TGTGCTCCTCCCCTGGTGAGGCATGATCATTGATGTTGTCACAATCATTT TCCGCTATTTGAACAATCTATAAGGAAACATGGATATACTAGAAGAATGA TTAAAGTAGGGGTCTGGTATTGCTGTATTAGTGTGAGATATATCTAGAAT TTTGATAACTTGTCTATTAGTTATTGGTACTGCTGTCATTTCATCACAGA CATCAACCATTAAAGGGTCTCGTCATAGCACATAATTCTCTATATTGTGC AGCATCAAGACAAGCTGTGAATTACATTTTCTAAAGAGTACTCCTTCCTT ATATATATGAGTTTTAAACTCTAAAATCATTTGTTTTCACATTCTTCTTT TCAAATTAGTGTTCCCGTTAAACATTTTTCTTTAATACATTAAACACTAA ATATCATGGGTTTCTTCTCATTTAGTGCCTCTAAATATAAAGATTTTTCT ACCTTCAAATGGAAAAAGGAGAGTTAAATTATATGCATTGACAGTTTTCA CACAGATATCTAATAGGAATTTATCTATGATCACATCATTCTATTTATTA GCATGATCTGATGACATGCTAAATTCCCATCGAATGCTTATGTTAAAAAA TTTACACTGAAAATACAGTAAAACTCCAAAAAACCAAACAGAAGACTGTG TCAGAGGAATCATTTTGGTAACAAAGAATGGCTGAATCAAATTTGAAATT AGTGATTTTTTGAAGGACCAAATGATATCATTATACAGGGTGAAGTCATC CAGAACATGATTGTCAAGACGTCCATTCCTAAACATGTGACATGTTTATA TATAAGGAGACATGAAATGTACATATGCCTCTTGTGTTTGTTTTGTTGTG ACTTTTCTTGCAAGATGATATATTCCTGTGATAACACTAAAAGAGAGAAG TGGGTGTTTACCCCAGTAAAGTTGAAGAAAATGGCTTTATCTGTTACCTG CTCCTAACCTCTGAAAGGCCATGTTGGTGTCTGTAGTGGCTTGTCTGAAA GGGGAGCAGAAGGTGCGGCGGCCGTGGTGGGCACCGGCATGCCTATCCAC AGTGTTCTTAAAGGTTGCAAAATCCAACAGACAATCAAGAGTTGTTTCCC TGAAGCTGGAACCATGATACAAAAAATCTCTCCAACTGTACCAGTGTACG TATAGCAAATTTCTTTTTGCCTAGAAAACAAAAGATAGGAAAGAACTTTT TCTAGCCCTTTTTATATATATATATATTTTTTTCTTTGGATTCCAAAACC TGGTTGTTTTTTCTCCTCTGGAGAACTGTTATGTTGTAGAAGATCCTTGT GCACTAATTTCCAGTGCTGTGTAATTATGTATTCTATTATATGTGAACGA AAATACTATATATGCCGTTTCTCTTCATCTTCTAATACCCCATATTT
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Coding sequence (CDS) from alignment at Vu08:37660186..37663682+

>Vigun08g215900.1_Vu_IT97K-499-35_v1.1 ID=Vigun08g215900.1_Vu_IT97K-499-35_v1.1; Name=Vigun08g215900.1; organism=Vigna unguiculata; type=CDS; length=378bp; location=Sequence derived from: Vu08:37660186..37663682+ (Vigna unguiculata
ATGAACAAAGGACAGTCACCGGAGCCTCTTGATTTCTTCATCTGGACTGT
TGAGGATGTTGGCTTGTGGTTGGAGACTATAAATCTTGGTAGTTACCGCC
AAATTTTTAAAGAAAATGGTGTCAATGGAGAATATCTGGAAGGCATGTCC
ATGTTTACGACTGAACAGATCCTACGTTTTATAAGACGTTGCCACATGAA
GTGGGGAGACTTCATCACATTGTGCAAAGAATTGAGACGGATTAAAGTGG
CTTGTCTGAAAGGGGAGCAGAAGGTGCGGCGGCCGTGGTGGGCACCGGCA
TGCCTATCCACAGTGTTCTTAAAGGTTGCAAAATCCAACAGACAATCAAG
AGTTGTTTCCCTGAAGCTGGAACCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR013761SAM/pointed_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding