Transcript Overview
Name | Vigun09g133600.1 |
Unique Name | Vigun09g133600.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1112 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g133600.1 | Vigun09g133600.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
Vigun09g133600.1_Vu_IT97K-499-35_v1.1 | Vigun09g133600.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g133600.1.v1.1.five_prime_UTR.2 | Vigun09g133600.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
Vigun09g133600.1.v1.1.five_prime_UTR.1 | Vigun09g133600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g133600.1.v1.1.CDS.1 | Vigun09g133600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g133600.1.v1.1.three_prime_UTR.1 | Vigun09g133600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1; organism=Vigna unguiculata; type=mRNA; length=1112bp GTCACATTCATGATTATAATAAATGAGTTTGATTGCAACCTGTAAGATGA AAAATGAAATCAATAATTAAAGCTTCCATGATGAACAAGAACAACCAAAA GAATAAGAAAATGTGAGAAAAGTAGTAAAAGCACGAAACAGATTAAAAAG AAAGAGAGAGAAATAAGATTGGCTGAGAAAACGCGTAAAAGGGTCTCTCT AGTTCAGATCTCAACTAGCCCACAATAAACCTTCCCATACCTCACACTGT GGCAGCCTCACAAATCGAATATTCTTAGCTTAAATTTTCGTATTTATTTT TGTTTTTCTTTTTCATAGAATCACTATCTTTTTCTTTCTCCAACAGCCAC TGCATCCGATGCTGTTTCCCTCACCATCTTGACAAAAATTTTGTGGTGCC TGCCTTCAAGCTATCACCAAAAGTTTAAGAAATGGATCAACAAGTTGAGA GGCAGAAGCGGAGCAAGGAGATGAAAAGGAAGAGTAGTAGGGTTAAGAAG ACTAACAAGATAGTGACGTGTTGTCGATGCCCCTGTCGTGCAGCATCGTG CATGTTCCGAGGTATTGGGAGGTGCGTGTTTGTCTCATGTTACCCTGTTG TGCGGTGCTTGGGTTTGGATGAACACAGACACCGCCACCATCATCACCAT GGCAAGCACTTTGATTGGTGACACAAACCAGAAAGGTTATAGGAATCAAT GCATACTTTATTCATGTTTTTCGGGATTTAAGATTTAGGAAAGGTTGAGA GGGATGAATAAATGGTCCTCACTGCTCACTTTTGTTCTTTATCTTTCTTC TATAGTAGATTATTAGCTTTACACGATTCTTTTCATGATAGATGAACAAT TCGAAATTTTGAAAGGGTTGGTTTAATGTGATTCAACCATCTCTTTTGGT TATGGAAAATTGTATACAAATTATCATTCATGGATATTGCAATTCAGCCA TCTTTGGCAACAGGAAAAGTCTGCAATCAGTCTGCATAACCACCATTTTC TGCATAAAGAGAAATTAGGGGTCGGGATTTGCAAATTGCAATTTTATTTG GCACTAAAACTAACTACCTCTCTGATACCAAGCAGATGAAATGAAACATT GAAAAGGAACAT back to topprotein sequence of Vigun09g133600.1_Vu_IT97K-499-35_v1.1 >Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=80bp MDQQVERQKRSKEMKRKSSRVKKTNKIVTCCRCPCRAASCMFRGIGRCVF VSCYPVVRCLGLDEHRHRHHHHHGKHFDW* back to topmRNA from alignment at Vu09:29279788..29280999- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1; organism=Vigna unguiculata; type=mRNA; length=1212bp; location=Sequence derived from: Vu09:29279788..29280999- (Vigna unguiculata GTCACATTCATGATTATAATAAATGAGTTTGATTGCAACCTGTAAGATGA
AAAATGAAATCAATAATTAAAGCTTCCATGATGAACAAGAACAACCAAAA
GAATAAGAAAATGTGAGAAAAGTAGTAAAAGCACGAAACAGATTAAAAAG
AAAGAGAGAGAAATAAGATTGGCTGAGAAAACGCGTAAAAGGGTCTCTCT
AGTTCAGATCTCAACTAGCCCACAATAAACCTTCCCATACCTCACACTGT
GGCAGCCTCACAAATCGAATATTCTTAGCTTAAATTTTCGTATTTATTTT
TGTTTTTCTTTTTCATAGAATCACTATCTTTTTCTTTCTCCAACAGCCAC
TGCATCCGATGCTGTTTCCCTCACCATCTTGACAAAAATTTTGTGGTGCC
TGCCTTCAAGCTATCACCAAAAGTTTAAGGTAACATGACAGTATTTTTGT
TACACTGACGTTAAAGTCTTGTCTTTGTGATTCTAGTACAGATAATAGTT
TCTGGGTTTGTGTTTTTTTGTAATGTTAGAAATGGATCAACAAGTTGAGA
GGCAGAAGCGGAGCAAGGAGATGAAAAGGAAGAGTAGTAGGGTTAAGAAG
ACTAACAAGATAGTGACGTGTTGTCGATGCCCCTGTCGTGCAGCATCGTG
CATGTTCCGAGGTATTGGGAGGTGCGTGTTTGTCTCATGTTACCCTGTTG
TGCGGTGCTTGGGTTTGGATGAACACAGACACCGCCACCATCATCACCAT
GGCAAGCACTTTGATTGGTGACACAAACCAGAAAGGTTATAGGAATCAAT
GCATACTTTATTCATGTTTTTCGGGATTTAAGATTTAGGAAAGGTTGAGA
GGGATGAATAAATGGTCCTCACTGCTCACTTTTGTTCTTTATCTTTCTTC
TATAGTAGATTATTAGCTTTACACGATTCTTTTCATGATAGATGAACAAT
TCGAAATTTTGAAAGGGTTGGTTTAATGTGATTCAACCATCTCTTTTGGT
TATGGAAAATTGTATACAAATTATCATTCATGGATATTGCAATTCAGCCA
TCTTTGGCAACAGGAAAAGTCTGCAATCAGTCTGCATAACCACCATTTTC
TGCATAAAGAGAAATTAGGGGTCGGGATTTGCAAATTGCAATTTTATTTG
GCACTAAAACTAACTACCTCTCTGATACCAAGCAGATGAAATGAAACATT
GAAAAGGAACAT back to topCoding sequence (CDS) from alignment at Vu09:29279788..29280999- >Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1; organism=Vigna unguiculata; type=CDS; length=240bp; location=Sequence derived from: Vu09:29279788..29280999- (Vigna unguiculata ATGGATCAACAAGTTGAGAGGCAGAAGCGGAGCAAGGAGATGAAAAGGAA GAGTAGTAGGGTTAAGAAGACTAACAAGATAGTGACGTGTTGTCGATGCC CCTGTCGTGCAGCATCGTGCATGTTCCGAGGTATTGGGAGGTGCGTGTTT GTCTCATGTTACCCTGTTGTGCGGTGCTTGGGTTTGGATGAACACAGACA CCGCCACCATCATCACCATGGCAAGCACTTTGATTGGTGA back to top
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