Vigun09g133600.1

Transcript Overview
NameVigun09g133600.1
Unique NameVigun09g133600.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length1112
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:29279788..29280999 -Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
psvuL493Pisum sativum Cameor genome v1aPisum sativum
pvvuL805Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
ccvuL0323Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0324Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0369Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0763Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vuzwsR673Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vssvuL407Vicia sativa cv. Studenica genome v1.0Vicia sativa
ccavuL347Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL710Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr09.378Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Cc_v2.0_05445.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_024335Cajanus cajan Asha genome v1.0Cajanus cajan
Vum_02G01400.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Psat05G0216800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-TanjilR_09565Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
jg54162.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.02G129400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigan.02G178200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.009G043300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g133600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g133600Vigun09g133600_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g133600.1Vigun09g133600.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun09g133600.1_Vu_IT97K-499-35_v1.1Vigun09g133600.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g133600.1.v1.1.five_prime_UTR.2Vigun09g133600.1.v1.1.five_prime_UTR.2_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR
Vigun09g133600.1.v1.1.five_prime_UTR.1Vigun09g133600.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g133600.1.v1.1.CDS.1Vigun09g133600.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g133600.1.v1.1.three_prime_UTR.1Vigun09g133600.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun09g133600.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1; organism=Vigna unguiculata; type=mRNA; length=1112bp
GTCACATTCATGATTATAATAAATGAGTTTGATTGCAACCTGTAAGATGA
AAAATGAAATCAATAATTAAAGCTTCCATGATGAACAAGAACAACCAAAA
GAATAAGAAAATGTGAGAAAAGTAGTAAAAGCACGAAACAGATTAAAAAG
AAAGAGAGAGAAATAAGATTGGCTGAGAAAACGCGTAAAAGGGTCTCTCT
AGTTCAGATCTCAACTAGCCCACAATAAACCTTCCCATACCTCACACTGT
GGCAGCCTCACAAATCGAATATTCTTAGCTTAAATTTTCGTATTTATTTT
TGTTTTTCTTTTTCATAGAATCACTATCTTTTTCTTTCTCCAACAGCCAC
TGCATCCGATGCTGTTTCCCTCACCATCTTGACAAAAATTTTGTGGTGCC
TGCCTTCAAGCTATCACCAAAAGTTTAAGAAATGGATCAACAAGTTGAGA
GGCAGAAGCGGAGCAAGGAGATGAAAAGGAAGAGTAGTAGGGTTAAGAAG
ACTAACAAGATAGTGACGTGTTGTCGATGCCCCTGTCGTGCAGCATCGTG
CATGTTCCGAGGTATTGGGAGGTGCGTGTTTGTCTCATGTTACCCTGTTG
TGCGGTGCTTGGGTTTGGATGAACACAGACACCGCCACCATCATCACCAT
GGCAAGCACTTTGATTGGTGACACAAACCAGAAAGGTTATAGGAATCAAT
GCATACTTTATTCATGTTTTTCGGGATTTAAGATTTAGGAAAGGTTGAGA
GGGATGAATAAATGGTCCTCACTGCTCACTTTTGTTCTTTATCTTTCTTC
TATAGTAGATTATTAGCTTTACACGATTCTTTTCATGATAGATGAACAAT
TCGAAATTTTGAAAGGGTTGGTTTAATGTGATTCAACCATCTCTTTTGGT
TATGGAAAATTGTATACAAATTATCATTCATGGATATTGCAATTCAGCCA
TCTTTGGCAACAGGAAAAGTCTGCAATCAGTCTGCATAACCACCATTTTC
TGCATAAAGAGAAATTAGGGGTCGGGATTTGCAAATTGCAATTTTATTTG
GCACTAAAACTAACTACCTCTCTGATACCAAGCAGATGAAATGAAACATT
GAAAAGGAACAT
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protein sequence of Vigun09g133600.1_Vu_IT97K-499-35_v1.1

>Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=80bp
MDQQVERQKRSKEMKRKSSRVKKTNKIVTCCRCPCRAASCMFRGIGRCVF
VSCYPVVRCLGLDEHRHRHHHHHGKHFDW*
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mRNA from alignment at Vu09:29279788..29280999-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1; organism=Vigna unguiculata; type=mRNA; length=1212bp; location=Sequence derived from: Vu09:29279788..29280999- (Vigna unguiculata
GTCACATTCATGATTATAATAAATGAGTTTGATTGCAACCTGTAAGATGA
AAAATGAAATCAATAATTAAAGCTTCCATGATGAACAAGAACAACCAAAA
GAATAAGAAAATGTGAGAAAAGTAGTAAAAGCACGAAACAGATTAAAAAG
AAAGAGAGAGAAATAAGATTGGCTGAGAAAACGCGTAAAAGGGTCTCTCT
AGTTCAGATCTCAACTAGCCCACAATAAACCTTCCCATACCTCACACTGT
GGCAGCCTCACAAATCGAATATTCTTAGCTTAAATTTTCGTATTTATTTT
TGTTTTTCTTTTTCATAGAATCACTATCTTTTTCTTTCTCCAACAGCCAC
TGCATCCGATGCTGTTTCCCTCACCATCTTGACAAAAATTTTGTGGTGCC
TGCCTTCAAGCTATCACCAAAAGTTTAAGGTAACATGACAGTATTTTTGT
TACACTGACGTTAAAGTCTTGTCTTTGTGATTCTAGTACAGATAATAGTT
TCTGGGTTTGTGTTTTTTTGTAATGTTAGAAATGGATCAACAAGTTGAGA
GGCAGAAGCGGAGCAAGGAGATGAAAAGGAAGAGTAGTAGGGTTAAGAAG
ACTAACAAGATAGTGACGTGTTGTCGATGCCCCTGTCGTGCAGCATCGTG
CATGTTCCGAGGTATTGGGAGGTGCGTGTTTGTCTCATGTTACCCTGTTG
TGCGGTGCTTGGGTTTGGATGAACACAGACACCGCCACCATCATCACCAT
GGCAAGCACTTTGATTGGTGACACAAACCAGAAAGGTTATAGGAATCAAT
GCATACTTTATTCATGTTTTTCGGGATTTAAGATTTAGGAAAGGTTGAGA
GGGATGAATAAATGGTCCTCACTGCTCACTTTTGTTCTTTATCTTTCTTC
TATAGTAGATTATTAGCTTTACACGATTCTTTTCATGATAGATGAACAAT
TCGAAATTTTGAAAGGGTTGGTTTAATGTGATTCAACCATCTCTTTTGGT
TATGGAAAATTGTATACAAATTATCATTCATGGATATTGCAATTCAGCCA
TCTTTGGCAACAGGAAAAGTCTGCAATCAGTCTGCATAACCACCATTTTC
TGCATAAAGAGAAATTAGGGGTCGGGATTTGCAAATTGCAATTTTATTTG
GCACTAAAACTAACTACCTCTCTGATACCAAGCAGATGAAATGAAACATT
GAAAAGGAACAT
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Coding sequence (CDS) from alignment at Vu09:29279788..29280999-

>Vigun09g133600.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g133600.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g133600.1; organism=Vigna unguiculata; type=CDS; length=240bp; location=Sequence derived from: Vu09:29279788..29280999- (Vigna unguiculata
ATGGATCAACAAGTTGAGAGGCAGAAGCGGAGCAAGGAGATGAAAAGGAA
GAGTAGTAGGGTTAAGAAGACTAACAAGATAGTGACGTGTTGTCGATGCC
CCTGTCGTGCAGCATCGTGCATGTTCCGAGGTATTGGGAGGTGCGTGTTT
GTCTCATGTTACCCTGTTGTGCGGTGCTTGGGTTTGGATGAACACAGACA
CCGCCACCATCATCACCATGGCAAGCACTTTGATTGGTGA
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