Vigun09g147300.1

Transcript Overview
NameVigun09g147300.1
Unique NameVigun09g147300.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length400
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu09supercontigVu09:31101798..31102450 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuL081Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL493Pisum sativum Cameor genome v1aPisum sativum
pvvuL791Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL233Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL348Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL443Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL652Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anvuL0200Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0323Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0369Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0763Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
asvuL205Vigna angularis Jingnong 6 genome v1.1Vigna angularis
asvuL559Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vssvuL407Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL601Vicia sativa cv. Studenica genome v1.0Vicia sativa
vssvuL749Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR463Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL210Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL318Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL411Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL606Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
carvuL234Cicer arietinum
carvuL332Cicer arietinum
carvuL419Cicer arietinum
carvuL623Cicer arietinum
vuvumR731Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR750Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR771Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR817Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL247Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL649Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL265Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL648Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR527Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-TanjilR_08077Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Ca_03999Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr09.2199Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-XM_004502623.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vum_02G01288.1Vigna umbellata FF25 genome v1.0Vigna umbellata
XM_058930757.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigst.02G117900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Phvul.009G050700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan04g156700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.02G160500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
jg54340.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat5g075840.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun09g147300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun09g147300Vigun09g147300_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g147300.1_Vu_IT97K-499-35_v1.1Vigun09g147300.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide
Vigun09g147300.1Vigun09g147300.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g147300.1.v1.1.five_prime_UTR.1Vigun09g147300.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g147300.1.v1.1.CDS.1Vigun09g147300.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g147300.1.v1.1.CDS.2Vigun09g147300.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun09g147300.1.v1.1.CDS.3Vigun09g147300.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun09g147300.1.v1.1.three_prime_UTR.1Vigun09g147300.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Vigun09g147300.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun09g147300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g147300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g147300.1; organism=Vigna unguiculata; type=mRNA; length=400bp
CATTTCATCATCACCCTGTTGGTATTGGGTGGGGTACACCATCACAACAC
CACTCTCCTCTCCAATATTAAAAAGGGGTGTTCCTGCTTCCATTTCCCTG
CCAAGACACGTATATTTTTCATACCTTCATTCCTCTGTCATGGCCCTTAA
GATCAACACTttccttctacttcttctcttgctcctccttcccttctcat
cttcAGGTTTGGCTCAAGGCTTCAGGGAAAACATGCATCCTACTCATCAT
CATGGCTTAACTTTACAGGTGAAGTCAAGGAAGCTGTTTGGTCATGATTT
TGTGTTGGATTATGATGAGGCAGGAGCCAACCCAAGGCACACTAAGAAAC
CTGGGAAGGGCCCTTGAAGACCTCGAAAGCTAATAATGAAATAAATGAAC
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protein sequence of Vigun09g147300.1_Vu_IT97K-499-35_v1.1

>Vigun09g147300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g147300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g147300.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=76bp
MALKINTFLLLLLLLLLPFSSSGLAQGFRENMHPTHHHGLTLQVKSRKLF
GHDFVLDYDEAGANPRHTKKPGKGP*
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mRNA from alignment at Vu09:31101798..31102450+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun09g147300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g147300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g147300.1; organism=Vigna unguiculata; type=mRNA; length=653bp; location=Sequence derived from: Vu09:31101798..31102450+ (Vigna unguiculata
CATTTCATCATCACCCTGTTGGTATTGGGTGGGGTACACCATCACAACAC
CACTCTCCTCTCCAATATTAAAAAGGGGTGTTCCTGCTTCCATTTCCCTG
CCAAGACACGTATATTTTTCATACCTTCATTCCTCTGTCATGGCCCTTAA
GATCAACACTTTCCTTCTACTTCTTCTCTTGCTCCTCCTTCCCTTCTCAT
CTTCAGGTCACCACCATCTTCTCTACCTATTTTCATACAATTACCTCTTT
CTACACACACATATATAACACAAGAGTTTTTATTTCCTTACAGGTTTGGC
TCAAGGCTTCAGGGAAAACATGCATCCTACTCATCATCATGGCTTAACTT
TACAGGTACACCCCCTTGTCCTCTTGTTTTGTTACATGGTCAAGACATTT
CATGTCGGAAACATACATGTTTGTTTGGTTTGGTTTGGTTTATAATGTGG
TACATATATAGTTTCCACAATGTTTTATAAACTGACATGTTACTTTTTTC
TGGTATTGGTTTTCAATGAAGGTGAAGTCAAGGAAGCTGTTTGGTCATGA
TTTTGTGTTGGATTATGATGAGGCAGGAGCCAACCCAAGGCACACTAAGA
AACCTGGGAAGGGCCCTTGAAGACCTCGAAAGCTAATAATGAAATAAATG
AAC
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Coding sequence (CDS) from alignment at Vu09:31101798..31102450+

>Vigun09g147300.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g147300.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g147300.1; organism=Vigna unguiculata; type=CDS; length=228bp; location=Sequence derived from: Vu09:31101798..31102450+ (Vigna unguiculata
ATGGCCCTTAAGATCAACACTTTCCTTCTACTTCTTCTCTTGCTCCTCCT
TCCCTTCTCATCTTCAGGTTTGGCTCAAGGCTTCAGGGAAAACATGCATC
CTACTCATCATCATGGCTTAACTTTACAGGTGAAGTCAAGGAAGCTGTTT
GGTCATGATTTTGTGTTGGATTATGATGAGGCAGGAGCCAACCCAAGGCA
CACTAAGAAACCTGGGAAGGGCCCTTGA
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