Transcript Overview
Name | Vigun09g195400.1 |
Unique Name | Vigun09g195400.1_Vu_IT97K-499-35_v1.1 |
Type | mRNA |
Organism | Vigna unguiculata (cowpea) |
Sequence length | 1640 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g195400.1_Vu_IT97K-499-35_v1.1 | Vigun09g195400.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
Vigun09g195400.1 | Vigun09g195400.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g195400.1.v1.1.five_prime_UTR.1 | Vigun09g195400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g195400.1.v1.1.CDS.1 | Vigun09g195400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g195400.1.v1.1.CDS.2 | Vigun09g195400.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
Vigun09g195400.1.v1.1.CDS.3 | Vigun09g195400.1.v1.1.CDS.3_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Vigun09g195400.1.v1.1.three_prime_UTR.1 | Vigun09g195400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 267..292 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun09g195400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195400.1; organism=Vigna unguiculata; type=mRNA; length=1640bp GAAATTAAATGATGTGATAAAGTATAACAGGAAAATAATGATTCGTCAAA AAAAAAAAAAGTTTAGCTTTGCCTTCAGCGCAGCAATTCTGAGAGCAACT TGGCACCGAAATCGAATAATCTTTATCATCTTTTTCACGTTAAGGTTCCA CTTCCAATCTGTTAATTCACGATTCAAAACCTATGCTCGCAGTTACTACA AGTTTCCATCACTGTCACTATTTTGAGCTTCTCTTTACCATCTTCCAAAT CCCATTTCTTTGAAGCCACATATTCTTTACTAAAGCATAATTGATTGATC AGTGGGAGCAGCGTGTTAGGGTTTCGAAAAGTTGATCTCGGAAAACAGTC CAAACCCTAATTCTTCATATCCATGTCATTCTGATTTTTGCTACTTCCGA CAATGGCGATCATCGGCGACGCACTTCGCCAGGCGTTCATGCCGAAGCGC GAGTACGAGAGCCTTAGGGAAGAAGAGAAAGCGTGGGGCAAGCTTCAGAG ACCTGCGACTGTGGCTTCCGTGGTTGCCATTGGGCTTGCGATATTCGTGT CCACGGTTATCAGTTTGAAAATCGTGTTTCCGGGTAGCGATGGGAAGAGA GTGTTATGTGTCGATCGAAGGCTTCAGTCTATACAGATAGGGATGAAAGG TGATTCCGATTCCGATCGCTTTCCCGGTGGTTTCTATCTCACGGACCAGG AGATTGCTGATTATTACTGGATGGTTGTGTTCATTCCTTCAACGATCATT TTCGCGCTGTCGGTTGTATATCTCGTTGCCGGCATGGCTGTTGCATATTC TGCTCCAACTAGGCATGGATGCTTGAAGGTGGTTGAAAATAATTTTTGTG CTTCAAGAAGGGGTGGGGTACGATGTCTGTCCATCTTAAACCTTATATTT GCTATCATCTTTGGTCTTCTTGCCTTGTTTCTTGGTTCAAGCCTCTTGAC AATGATGAGCAACTGTTCTAAACCTCTGTTTTGGTGCTACGAAATTGCAT CGTGGGGACTGGTTGTACTATATGGGGGCACTGCCTTCTTCTTGAGGAGA AAGGCGGCCACAATTCTGGACGAGGGAAATTTAAGTGGTCGAAATCTGGG GCTGGAAATGTTGGAAACGAACCCCCTGGAAGTTACACCAGAGGTGGAAA GGCGTGTAAATGAAGGGTTTAAAGCATGGATGGGTCCATCCCTTCTTTCT TCTGACGAAGAAGACGAAGCTGACAGGTATGATGAGGCACCTCGTGCCAT GCGATCTAACTCAAACAGGCAAAGAGTCTGAACTCGATATATTCAGGGCC AAGAGCTTGATATCATATTTTCCAGCCTTCATGCCTTAAAGAATGCTGTA TGGTGTGGAAAGCAGTTTTGGACAAAAAATGTTTACATGTATCATATGAC AAAAAAAAAAATGTTGATTAAAGGCGTGTGAATTTGATGTTCAACTTTGA ACTACGATTTCGTCTGGGCGAGTTGGTAGTCTGTAGTTTAGTCTGTGAAT AATTACTAAATCGGGAATGACCTGACTTTACTTAGGTTGACTACAAAATG TTTCCTGAACTGCTCACTGATCTTCTCTATGGAGGCCTAATTTTTTAGTT TGATTACAATTTTGTTTGTGAATTTTTTGTCTCAGAAGCA back to topprotein sequence of Vigun09g195400.1_Vu_IT97K-499-35_v1.1 >Vigun09g195400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=293bp MAIIGDALRQAFMPKREYESLREEEKAWGKLQRPATVASVVAIGLAIFVS TVISLKIVFPGSDGKRVLCVDRRLQSIQIGMKGDSDSDRFPGGFYLTDQE IADYYWMVVFIPSTIIFALSVVYLVAGMAVAYSAPTRHGCLKVVENNFCA SRRGGVRCLSILNLIFAIIFGLLALFLGSSLLTMMSNCSKPLFWCYEIAS WGLVVLYGGTAFFLRRKAATILDEGNLSGRNLGLEMLETNPLEVTPEVER RVNEGFKAWMGPSLLSSDEEDEADRYDEAPRAMRSNSNRQRV* back to topmRNA from alignment at Vu09:37002940..37007065+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun09g195400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195400.1; organism=Vigna unguiculata; type=mRNA; length=4126bp; location=Sequence derived from: Vu09:37002940..37007065+ (Vigna unguiculata GAAATTAAATGATGTGATAAAGTATAACAGGAAAATAATGATTCGTCAAA
AAAAAAAAAAGTTTAGCTTTGCCTTCAGCGCAGCAATTCTGAGAGCAACT
TGGCACCGAAATCGAATAATCTTTATCATCTTTTTCACGTTAAGGTTCCA
CTTCCAATCTGTTAATTCACGATTCAAAACCTATGCTCGCAGTTACTACA
AGTTTCCATCACTGTCACTATTTTGAGCTTCTCTTTACCATCTTCCAAAT
CCCATTTCTTTGAAGCCACATATTCTTTACTAAAGCATAATTGATTGATC
AGTGGGAGCAGCGTGTTAGGGTTTCGAAAAGTTGATCTCGGAAAACAGTC
CAAACCCTAATTCTTCATATCCATGTCATTCTGATTTTTGCTACTTCCGA
CAATGGCGATCATCGGCGACGCACTTCGCCAGGCGTTCATGCCGAAGCGC
GAGTACGAGAGCCTTAGGGAAGAAGAGAAAGCGTGGGGCAAGCTTCAGAG
ACCTGCGACTGTGGCTTCCGTGGTTGCCATTGGGCTTGCGATATTCGTGT
CCACGGTTATCAGTTTGAAAATCGTGTTTCCGGGTAGCGATGGGAAGAGA
GTGTTATGTGTCGATCGAAGGCTTCAGTCTATACAGATAGGGATGAAAGG
TGATTCCGATTCCGATCGCTTTCCCGGTGGTTTCTATCTCACGGACCAGG
AGATTGCTGATTATTACTGGATGGTTGTGTTCATTCCTTCAACGATCATT
TTCGCGCTGTCGGTTGTATATCTCGTTGCCGGTAAGAAATTGGATTTCTA
TGTTGCCTTTGATGAGGGTTTCTTGTCTGATTGTTGTCAAGATATTGATG
CAGAATTTTTGAAGACTGTTTTTGGTGTTTGTTTTGTTTCATTAAACAGA
TAAAGGTGTCCAATGCCACTTTATTGGCATCTTATACGATTCTAAGTTTG
GTGTTAAAAATATTTATGGCTATAATATAATGATTGGGAGAATATTTTTG
GGGTTAAAGGGTTTCAAGAACGTGGACCGCTGGAAATGTTTTTTAGAGAA
TCACTGTGGGAAGAGTTCAACTGTAGATTTTGCCTTTTATGCGGGAAGTG
CAATTCACGATTGCCGTAAAACATGAAATGTCTAGGGGGTTGATCAGAAA
GTAAACTTCTTCCATCATCTCATGGCTAGGAGGAAATAGCCTTGAAATTG
AACTAAAATCATAAGAAATGGAACCAAGATCGTTGGTGTCCGTTGGAAAA
TAATCTTGATTGCAGTCACTTTAACCCTTGCACTAATTGCAGCCTCTTTA
GGGTTTCCTTTAATTTCAACTTTGATTATTAGATACGACTTGAATACATC
TTATAAAGATTAAGCAAACCTAAGCTGATTTTATGGAATTGAGTTAGGTT
TAAACAAAATTCTTAGAGTGTCAATGAAAGATTAGGAGATTGAGAGACAG
AAGTCTTAGCTCACATGGGTTGTGGTGCCTCTTGAATGAGAAGTAAATAC
TGCAGTGCTGTTGGATTGTTCTCCCTATTGTGAAATGGAAGGAGATTATT
TTGATGTTACAATAGACTTATTTGGTTTATGCTCACTAAGATTTGAAGAG
TATCTCTTGGCATTGATGTAACACGTGGGTTGTTTTCACTAAGTTTAATA
TGATCAATGGGACCATTGTACTATTCTCGTTGATAATTGGAAGGTATGCA
TTTCTGCATTCTAGAGGGGAGTACTGGGGAAGTAGATCACTTGTTCTAAA
ATTTCTTCTGGCATCTTGTTACAGTAATTCTACATTATAAAGTCTTGGAT
CCACAACACAAATTTACAGTTTGACTCACGTAAGTCAATGCTTTCTGTTA
TAAGCTTAAGAAAATTTTACAAATTTGGGAATCCAGTAGTTTGGCAAACG
TTATCAATTACTCTGGTAGAGTGTTTCTATTTTCCATTCAACCACAACCA
TTTCACTGAAATTCTATATAATGCCACAGATCTCACCATGGGGATTCTTT
TCACAGATTTGCTAAATGATGTGGATGAATGTCAATCACAGATAGCTACA
TTTTGAAATATATTCCATTTCTTTAGCCTAGGTTTTTTGCAAGACTCATG
ATCTCTTTTGTCTCTCTTTCGGAATTCATGATGTTCGATTTACATAGGTC
AATGGTTTGTGGTGTTAAAAGAGTGCTCTCTAATCCCTACATCGTACATC
CCCCCTCTTAATGCAAAACATGTTTTGACTGCATTGTACAGCTTCTTAAT
TTATAATTCATCTATTCTTTGATAGTGGTATAATATTTAGGCTTAATTGC
ACATTTATCTTGACAAACTAGGTCTTATTTTGTCCAAATATGTGGCGATA
GATAAGGGATCAAGGATATAGGTTATTTTAAAAAATTTAGAACACATTTG
ATAAAATTTGAAGGATTTTGAAAGATAAGAGAGTAGATTTTGAAGAGAGA
TAATTTTGAGTATTTTTTAGTGAAACCTGATGTTTTGGTTGGTGACTTTT
GAGCAAAAGACAATTTGGTCAATTCATTTTGTTAAGATTTTGAGTCGAAC
AGGATCATTTGCGGGTTTTGGTTATAAAAGAAGTTGAATAGATAAACAAA
TTTCTTACTTTTAAAAAGGGTAAATTATTTAGTATGTCCTGAGCTATATT
TGCGAATTTCAAACAGACCCCTGAACTATTTTTTTAATTGGGTCCCTAAT
CTAAAGGTTGGTCACTGGTTATTCTTTGGCTGGATAAAACCTACACAAAA
TGACAGTGCTGGTTTTAGAAACCCTAAGAATTCAATTAAAAAAACTTACA
TGATCGATGACCTAATAAAAAATAGTTTAGGGAGCTATTTGAAAATTCAT
AAATAGATACATTTAATTGGCTCCAACAAAATTAGGAGGACCAACATCAG
ACATAGTTCAAACTGAAGGGATAAAAAGTGCAATCAAGTGTTATCCTTTT
TTTTTTGGAAACATGTGTTGGATAAATACCCATTTCATTGTTCTTGGTGC
ATTATCTTGTTTCACATAAATTACTGTTTTTGGGTTAAATGACTTGTCTT
GTTAGTTCTGAAAGCTTTGTGCCATAATTATGGAGAATTTAGTTTTGTGT
TATGCCCAGTTTTAATTATGACAGTTGTTTTGCAGGCATGGCTGTTGCAT
ATTCTGCTCCAACTAGGCATGGATGCTTGAAGGTGGTTGAAAATAATTTT
TGTGCTTCAAGAAGGGGTATGATTTCTTCTATAACAATGGTCTTTCCTTT
GCGACGCTCTAAAATTTTGGCGGATCTTATTCTAATGCCTGAGCATTTTA
TCGGCCCAAAATTGACTTAGTTTTTTGTTTTCTTTGGATAACCAACAGGT
GGGGTACGATGTCTGTCCATCTTAAACCTTATATTTGCTATCATCTTTGG
TCTTCTTGCCTTGTTTCTTGGTTCAAGCCTCTTGACAATGATGAGCAACT
GTTCTAAACCTCTGTTTTGGTGCTACGAAATTGCATCGTGGGGACTGGTT
GTACTATATGGGGGCACTGCCTTCTTCTTGAGGAGAAAGGCGGCCACAAT
TCTGGACGAGGGAAATTTAAGTGGTCGAAATCTGGGGCTGGAAATGTTGG
AAACGAACCCCCTGGAAGTTACACCAGAGGTGGAAAGGCGTGTAAATGAA
GGGTTTAAAGCATGGATGGGTCCATCCCTTCTTTCTTCTGACGAAGAAGA
CGAAGCTGACAGGTATGATGAGGCACCTCGTGCCATGCGATCTAACTCAA
ACAGGCAAAGAGTCTGAACTCGATATATTCAGGGCCAAGAGCTTGATATC
ATATTTTCCAGCCTTCATGCCTTAAAGAATGCTGTATGGTGTGGAAAGCA
GTTTTGGACAAAAAATGTTTACATGTATCATATGACAAAAAAAAAAATGT
TGATTAAAGGCGTGTGAATTTGATGTTCAACTTTGAACTACGATTTCGTC
TGGGCGAGTTGGTAGTCTGTAGTTTAGTCTGTGAATAATTACTAAATCGG
GAATGACCTGACTTTACTTAGGTTGACTACAAAATGTTTCCTGAACTGCT
CACTGATCTTCTCTATGGAGGCCTAATTTTTTAGTTTGATTACAATTTTG
TTTGTGAATTTTTTGTCTCAGAAGCA back to topCoding sequence (CDS) from alignment at Vu09:37002940..37007065+ >Vigun09g195400.1_Vu_IT97K-499-35_v1.1 ID=Vigun09g195400.1_Vu_IT97K-499-35_v1.1; Name=Vigun09g195400.1; organism=Vigna unguiculata; type=CDS; length=879bp; location=Sequence derived from: Vu09:37002940..37007065+ (Vigna unguiculata ATGGCGATCATCGGCGACGCACTTCGCCAGGCGTTCATGCCGAAGCGCGA GTACGAGAGCCTTAGGGAAGAAGAGAAAGCGTGGGGCAAGCTTCAGAGAC CTGCGACTGTGGCTTCCGTGGTTGCCATTGGGCTTGCGATATTCGTGTCC ACGGTTATCAGTTTGAAAATCGTGTTTCCGGGTAGCGATGGGAAGAGAGT GTTATGTGTCGATCGAAGGCTTCAGTCTATACAGATAGGGATGAAAGGTG ATTCCGATTCCGATCGCTTTCCCGGTGGTTTCTATCTCACGGACCAGGAG ATTGCTGATTATTACTGGATGGTTGTGTTCATTCCTTCAACGATCATTTT CGCGCTGTCGGTTGTATATCTCGTTGCCGGCATGGCTGTTGCATATTCTG CTCCAACTAGGCATGGATGCTTGAAGGTGGTTGAAAATAATTTTTGTGCT TCAAGAAGGGGTGGGGTACGATGTCTGTCCATCTTAAACCTTATATTTGC TATCATCTTTGGTCTTCTTGCCTTGTTTCTTGGTTCAAGCCTCTTGACAA TGATGAGCAACTGTTCTAAACCTCTGTTTTGGTGCTACGAAATTGCATCG TGGGGACTGGTTGTACTATATGGGGGCACTGCCTTCTTCTTGAGGAGAAA GGCGGCCACAATTCTGGACGAGGGAAATTTAAGTGGTCGAAATCTGGGGC TGGAAATGTTGGAAACGAACCCCCTGGAAGTTACACCAGAGGTGGAAAGG CGTGTAAATGAAGGGTTTAAAGCATGGATGGGTCCATCCCTTCTTTCTTC TGACGAAGAAGACGAAGCTGACAGGTATGATGAGGCACCTCGTGCCATGC GATCTAACTCAAACAGGCAAAGAGTCTGA back to top
|