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Transcript Overview
| Name | Vigun10g150400.1 |
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| Unique Name | Vigun10g150400.1_Vu_IT97K-499-35_v1.1 |
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| Type | mRNA |
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| Organism | Vigna unguiculata (cowpea) |
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| Sequence length | 1354 |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun10g150400.1 | Vigun10g150400.1_Vu_IT97K-499-35_v1.1-protein | Vigna unguiculata | polypeptide |
| Vigun10g150400.1_Vu_IT97K-499-35_v1.1 | Vigun10g150400.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun10g150400.1.v1.1.five_prime_UTR.1 | Vigun10g150400.1.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun10g150400.1.v1.1.CDS.1 | Vigun10g150400.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Vigun10g150400.1.v1.1.three_prime_UTR.1 | Vigun10g150400.1.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1 | Vigna unguiculata | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 3.40.50.150 | | coord: 109..305
e-value: 2.4E-17
score: 65.0 |
| None | No IPR available | PFAM | PF13578 | Methyltransf_24 | coord: 150..278
e-value: 1.6E-9
score: 38.7 |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase | SUPERFAMILY | 53335 | S-adenosyl-L-methionine-dependent methyltransferases | coord: 87..294 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun10g150400.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g150400.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g150400.1; organism=Vigna unguiculata; type=mRNA; length=1354bp
ataaattaaattaaattTCGCACGAAATGAAATTCCACAAACGTAACATT
CTATGAACTAtctatctccttcttcttcttcttctttttcttcACCTCCA
TTGTTTATGTGGTCAGTAGTTGTTGGCACTCATGTCCAAACCAAAACACA
TATAAAGGAAAACAAAGAATTCCTATGATAACCCAAAACCAGACAACCAA
AGGTTTCTCATAAAACCTAAAATTCTCCGAAAACAAATCTTTACAAACAT
GAAAACTGAGCAACACTATGCCAGTAGAAAACTTTCACCTTCGTTACAAC
CTAAGATCATCAAAACGGCAAAACCCGCAGCGTATTTTATTCTTCTTCTG
CTAACCTACTCCTTGGGTTACTTATCCCACCACCCTGCTTCCACTTCATT
ACCACTCGCACCGTCATCACCACCACCACAATTACCAGAACCTGATATTC
GTTTCGCAATCAACACCACCGAGTTGAACCCGTTCCGAATCACCACTCGC
TGCGCCGATCCAATTCCGCCGGAGACAATCCGACGGACTCTCGTGGACCG
CCTCTTCAACGGCACCTCGCCGTTTGACAATTTCCCGCCGCCGCACGCGG
CGGAGAAGCTGCGGCGGACGAAGAGGGTGAAGGGTTGGGGCTCCACCGGT
GCTGTGTTCGAGAACCTCATCCGCCGCGTGCGGCCGCGGACCGTCGTTGA
AGTTGGTACGTTCCTCGGCGCGTCGGCGATTCACATGGCTGAGTTGACTC
GCCAACTCGGTCTGCAAACTCAGATCCTCTGCGTGGACGACTTTCGCGGC
TGGGCCGGGTTCAGAGAGCGGTTCATGAACATACCCATGGAAAACGGTGA
CGTTTGGCTCTTTTACCAGTTCCTTCAGAACGTGGTCACTTTTAACCAAA
CCGGGTCAGTTTTACCTGTTCCGTTTTCAAGCGGGTCGACCCTGATGTTG
TTTTGCGAGTGGGGCGTGTACGCGGATTTAGTTGAGATCGATGCGGGTCA
CGATTTTTTGTCTGCTTGGGCTGATATCAACCGGGGCTTTCGGATCCTCC
GACCCGGGGGGGTTATTTTCGGGCACGATTATTTCACTGCAGCAGATAAT
AGAGGGGTTCGGAGAGCCGTTGATCTGTTTGCTAAAGTTCACAATCTGAA
GGTAAATATTGATGGTCAACATTGGGTCATTTATTCTTCCTAATGTTTAA
AATTTCCTATGTGGAGTAAATAGGTATAACACGTTGATTCGATTATTGGG
GGTGTATAAATTACAATGAAGGTTCAATTTGATTCAGTATTTTGTTTCTC
TGCACTTTCATACAATACAATTCATAATTTTCTCTTTCTCTACCATCTAA
AAAG back to topprotein sequence of Vigun10g150400.1_Vu_IT97K-499-35_v1.1 >Vigun10g150400.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g150400.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g150400.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=315bp
MKTEQHYASRKLSPSLQPKIIKTAKPAAYFILLLLTYSLGYLSHHPASTS
LPLAPSSPPPQLPEPDIRFAINTTELNPFRITTRCADPIPPETIRRTLVD
RLFNGTSPFDNFPPPHAAEKLRRTKRVKGWGSTGAVFENLIRRVRPRTVV
EVGTFLGASAIHMAELTRQLGLQTQILCVDDFRGWAGFRERFMNIPMENG
DVWLFYQFLQNVVTFNQTGSVLPVPFSSGSTLMLFCEWGVYADLVEIDAG
HDFLSAWADINRGFRILRPGGVIFGHDYFTAADNRGVRRAVDLFAKVHNL
KVNIDGQHWVIYSS* back to topmRNA from alignment at Vu10:36963889..36965242- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Vigun10g150400.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g150400.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g150400.1; organism=Vigna unguiculata; type=mRNA; length=1354bp; location=Sequence derived from: Vu10:36963889..36965242- (Vigna unguiculata
ATAAATTAAATTAAATTTCGCACGAAATGAAATTCCACAAACGTAACATT
CTATGAACTATCTATCTCCTTCTTCTTCTTCTTCTTTTTCTTCACCTCCA
TTGTTTATGTGGTCAGTAGTTGTTGGCACTCATGTCCAAACCAAAACACA
TATAAAGGAAAACAAAGAATTCCTATGATAACCCAAAACCAGACAACCAA
AGGTTTCTCATAAAACCTAAAATTCTCCGAAAACAAATCTTTACAAACAT
GAAAACTGAGCAACACTATGCCAGTAGAAAACTTTCACCTTCGTTACAAC
CTAAGATCATCAAAACGGCAAAACCCGCAGCGTATTTTATTCTTCTTCTG
CTAACCTACTCCTTGGGTTACTTATCCCACCACCCTGCTTCCACTTCATT
ACCACTCGCACCGTCATCACCACCACCACAATTACCAGAACCTGATATTC
GTTTCGCAATCAACACCACCGAGTTGAACCCGTTCCGAATCACCACTCGC
TGCGCCGATCCAATTCCGCCGGAGACAATCCGACGGACTCTCGTGGACCG
CCTCTTCAACGGCACCTCGCCGTTTGACAATTTCCCGCCGCCGCACGCGG
CGGAGAAGCTGCGGCGGACGAAGAGGGTGAAGGGTTGGGGCTCCACCGGT
GCTGTGTTCGAGAACCTCATCCGCCGCGTGCGGCCGCGGACCGTCGTTGA
AGTTGGTACGTTCCTCGGCGCGTCGGCGATTCACATGGCTGAGTTGACTC
GCCAACTCGGTCTGCAAACTCAGATCCTCTGCGTGGACGACTTTCGCGGC
TGGGCCGGGTTCAGAGAGCGGTTCATGAACATACCCATGGAAAACGGTGA
CGTTTGGCTCTTTTACCAGTTCCTTCAGAACGTGGTCACTTTTAACCAAA
CCGGGTCAGTTTTACCTGTTCCGTTTTCAAGCGGGTCGACCCTGATGTTG
TTTTGCGAGTGGGGCGTGTACGCGGATTTAGTTGAGATCGATGCGGGTCA
CGATTTTTTGTCTGCTTGGGCTGATATCAACCGGGGCTTTCGGATCCTCC
GACCCGGGGGGGTTATTTTCGGGCACGATTATTTCACTGCAGCAGATAAT
AGAGGGGTTCGGAGAGCCGTTGATCTGTTTGCTAAAGTTCACAATCTGAA
GGTAAATATTGATGGTCAACATTGGGTCATTTATTCTTCCTAATGTTTAA
AATTTCCTATGTGGAGTAAATAGGTATAACACGTTGATTCGATTATTGGG
GGTGTATAAATTACAATGAAGGTTCAATTTGATTCAGTATTTTGTTTCTC
TGCACTTTCATACAATACAATTCATAATTTTCTCTTTCTCTACCATCTAA
AAAG back to topCoding sequence (CDS) from alignment at Vu10:36963889..36965242- >Vigun10g150400.1_Vu_IT97K-499-35_v1.1 ID=Vigun10g150400.1_Vu_IT97K-499-35_v1.1; Name=Vigun10g150400.1; organism=Vigna unguiculata; type=CDS; length=945bp; location=Sequence derived from: Vu10:36963889..36965242- (Vigna unguiculata
ATGAAAACTGAGCAACACTATGCCAGTAGAAAACTTTCACCTTCGTTACA
ACCTAAGATCATCAAAACGGCAAAACCCGCAGCGTATTTTATTCTTCTTC
TGCTAACCTACTCCTTGGGTTACTTATCCCACCACCCTGCTTCCACTTCA
TTACCACTCGCACCGTCATCACCACCACCACAATTACCAGAACCTGATAT
TCGTTTCGCAATCAACACCACCGAGTTGAACCCGTTCCGAATCACCACTC
GCTGCGCCGATCCAATTCCGCCGGAGACAATCCGACGGACTCTCGTGGAC
CGCCTCTTCAACGGCACCTCGCCGTTTGACAATTTCCCGCCGCCGCACGC
GGCGGAGAAGCTGCGGCGGACGAAGAGGGTGAAGGGTTGGGGCTCCACCG
GTGCTGTGTTCGAGAACCTCATCCGCCGCGTGCGGCCGCGGACCGTCGTT
GAAGTTGGTACGTTCCTCGGCGCGTCGGCGATTCACATGGCTGAGTTGAC
TCGCCAACTCGGTCTGCAAACTCAGATCCTCTGCGTGGACGACTTTCGCG
GCTGGGCCGGGTTCAGAGAGCGGTTCATGAACATACCCATGGAAAACGGT
GACGTTTGGCTCTTTTACCAGTTCCTTCAGAACGTGGTCACTTTTAACCA
AACCGGGTCAGTTTTACCTGTTCCGTTTTCAAGCGGGTCGACCCTGATGT
TGTTTTGCGAGTGGGGCGTGTACGCGGATTTAGTTGAGATCGATGCGGGT
CACGATTTTTTGTCTGCTTGGGCTGATATCAACCGGGGCTTTCGGATCCT
CCGACCCGGGGGGGTTATTTTCGGGCACGATTATTTCACTGCAGCAGATA
ATAGAGGGGTTCGGAGAGCCGTTGATCTGTTTGCTAAAGTTCACAATCTG
AAGGTAAATATTGATGGTCAACATTGGGTCATTTATTCTTCCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029063 | SAM-dependent_MTases_sf |
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