Vigun11g066700.5

Transcript Overview
NameVigun11g066700.5
Unique NameVigun11g066700.5_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length2252
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu11supercontigVu11:16776911..16779316 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun11g066700Vigun11g066700_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g066700.5Vigun11g066700.5_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun11g066700.5_Vu_IT97K-499-35_v1.1Vigun11g066700.5_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g066700.5.v1.1.five_prime_UTR.1Vigun11g066700.5.v1.1.five_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatafive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g066700.5.v1.1.CDS.1Vigun11g066700.5.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun11g066700.5.v1.1.CDS.2Vigun11g066700.5.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g066700.5.v1.1.three_prime_UTR.1Vigun11g066700.5.v1.1.three_prime_UTR.1_Vu_IT97K-499-35_v1.1Vigna unguiculatathree_prime_UTR


Homology
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BLAST of Vigun11g066700.5 vs. DB:Swiss
Match: WDR44_BOVIN (WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.717e-7
Identity = 39/127 (30.71%), Postives = 59/127 (46.46%), Query Frame = 1 
Query: 1066 HDGSIWSIKFSLDGKYLASAGEDCVIHVWRVVESERKGELLVEKPDDGILNMLFVVNG----SPEPSSPGMENNLEKKRRGRLSVSRKSLSVDQLVVPETVFALTEKSVCTFKGHLHDVLDLSWSKS 1434
            H G++W++KFS  G+ LASAG+D V+ +W            ++   D   NM    N     SP PS   + ++      G  S + +    D    P       ++  C +KGH  D+LDLSWSK+
Sbjct:  509 HMGAVWTMKFSHCGRLLASAGQDNVVRIW-----------ALKNAFDYFNNMRMKYNTEGRVSPSPSQESLNSSKSDTDTGVCSGTDE--DPDDKNAP-----FRQRPFCKYKGHTADLLDLSWSKN 617
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BLAST of Vigun11g066700.5 vs. DB:Swiss
Match: WDR44_XENLA (WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.342e-7
Identity = 38/127 (29.92%), Postives = 58/127 (45.67%), Query Frame = 1 
Query: 1066 HDGSIWSIKFSLDGKYLASAGEDCVIHVWRVVESERKGELLVEKPDDGILNMLFVVNG----SPEPSSPGMENNLEKKRRGRLSVSRKSLSVDQLVVPETVFALTEKSVCTFKGHLHDVLDLSWSKS 1434
            H G++W++KFS  G+ LASAG+D V+ +W           +++   D   NM    N     SP PS   + ++      G  S        D +   +      +   C +KGH  D+LDLSWSK+
Sbjct:  512 HVGAVWTMKFSHCGRLLASAGQDNVVRIW-----------VLKNAFDYFNNMRIKYNTEGRVSPSPSQESLNSSKSDTDGGVFS------GTDDVDPDDKNAPFRQVPFCKYKGHTADLLDLSWSKN 621
The following BLAST results are available for this feature:
BLAST of Vigun11g066700.5 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
WDR44_BOVIN3.717e-730.71WD repeat-containing protein 44 OS=Bos taurus OX=9... [more]
WDR44_XENLA4.342e-729.92WD repeat-containing protein 44 OS=Xenopus laevis ... [more]
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 346..385
e-value: 2.1E-7
score: 40.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 352..384
e-value: 2.6E-5
score: 24.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 353..394
score: 12.647
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..330
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 353..394
score: 11.84
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 349..478

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun11g066700.5_Vu_IT97K-499-35_v1.1 ID=Vigun11g066700.5_Vu_IT97K-499-35_v1.1; Name=Vigun11g066700.5; organism=Vigna unguiculata; type=mRNA; length=2252bp
AAAGAGAAAGCCCCCTGTGCTTCTTCATTAGCAAACGCAAGTTCTTTGTG
CAGTCCCTACCCCAAAAGAAAGGTAGTTCTCATTCCAACACAACAATACT
GAACACAAAACAGTAGCAGAACCCACCTGGCAAACACAACACACATACAC
ACTCTCAGTGCAGGTTTTCATTTCCATTACATCTCATTAACATTCTTACT
GTACCATTCATTGGATCTGACTCAAACCGAACACGTTCCCCGGCATTGGA
TCCGTTCCACGATCCGACCCATTTTCCCTTCGGGTTGGTTGATCCAAATG
GGAATGCTCCACAAGCCATGACCCCAGCCGTGGAGGAGGACCACCACGAC
CCTTCCCTTTTCCACGACTCCAACGACCGTTTGCTCTCTTCATGCTCCTG
CTCCACGTCCGCCTCCGACGACGACGCTCCCACTCCCCAAAACGACACTC
ATGCCCTCCCTCAATTCCCCTTCCCCACCATGTGCAAGTACGATGCCTGG
ATCTCCGAACCCTCCTCCCTCTCCGAGCGCCGCTCCCGCCTCCTCCGACA
GTTCGGTCTCCCCACCCCGCCTCCCCCCGCCGCAACCATCCCCCGATCAG
CTTCCTCTCACCAATGCACCGACACTTCCACCGCCGCCGCCACTATTCCC
CGATCGAAATCCGACAATACCGCGGATCGCGGCACCAAGCATAGCAAGTC
CTCCGTTGTTCCCATTCGCTACAATGACAACGGTTTTCTCGTGAATAATA
ATATTAATATTAATTGTAGTGTTAGTGGTAGTCATTCTGTGAATAATAGG
ATTTGTGTGGGTGTATCTGAGGAGGGTGGAAATGGGGAGGGGAATGTGGT
GGATGAAGTGGAGCAAGCGTGTACGATTAGGGATTTGGACAATGGGAAGG
AGTTTGTGGTGAAGCGGGATGGGGTGTGGAATGAGGTGAAGGAGGTGGGG
ACTGGAAGGCGTTTGACTGTGGAGGAGTTTGAGATGACGGTGGGGCACTC
TCCGATTGTTCAGGAGCTAATGAGGAGGCAGAGTGCGGAGGAAGTtggcg
atggggacggcgtggatggggaaggtgatggtgggagtgctggtggtgtt
gatgatgaaggggatggtgGCAAAGTGAGGAGAAAAGGTGGGTGGTTTAA
GTTCATGAGTTTGAAGAGTGTTGTGGTGGGTCAGAAGGAGAGAAGGAGTG
GTGATGAGAGGGATACGTCTTCGTCAGAGAAAGGGGGTGGCCGGAGGTCA
AGCTCTGCCACGGACGATAGCCAGGATGGTGGTAGTGGTTTGGTTCAGGG
GGGTGAGAGAGTGAGGGTTAGACAGTATGGGAAGTCTTGTAAGGAGGTTA
CAGGGCTTTATAAGAGCCAGAAGATTCAGGCTCATGATGGATCCATTTGG
AGCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCTAGTGCCGGTGAAGA
TTGTGTGATTCATGTTTGGCGGGTTGTGGAGTCTGAGAGGAAGGGCGAGT
TACTAGTGGAGAAACCGGACGATGGGATTTTGAACATGTTGTTTGTTGTT
AACGGGTCGCCGGAGCCTTCTTCTCCTGGCATGGAGAATAATTTGGAGAA
GAAGAGAAGGGGGAGGTTGTCTGTCAGCAGAAAATCGTTGAGCGTAGACC
AGTTAGTAGTGCCGGAAACTGTGTTTGCTCTCACTGAAAAATCGGTTTGC
ACCTTTAAGGGTCATCTCCATGACGTGCTTGACCTTTCTTGGTCCAAGTC
TCAGATAAAATCACTTAAGAGGAACAGCTGGACTTTTCTACCGCTACGTA
AAATTATTGAGCTTGGATTGAGAAATTGATTTAGTGCTAACCAAACAAGC
ACCGATTGAGGCTCTTGTGAGAGAAAGTGGATATAATGAAACAGTTAGAT
TAAATGGGCAGAAAACCAAAACATCAGAAAGCACCAAGAAGATACTCAAT
TATACCGAAAATTTGATTATTATGTATGGAACCCATTAGTCTATTGATTT
ATTTTAGCTGGCCTTGCCTAGTGGGATAAGACTTGGTTCATATTTTATTG
TCCATTTTTAATTAGCAGAATAGGCATCAAATGTGAGTTCTGAATTGTAT
CAGAGTATAatatttatatttataagtttatgtattgaaatgtttatttt
ttatGGAATATGCTGTTAAGGGAACACAAATTGTTACTATAAGTTCGAAG
ACTATTTTTGTTGATTTATTTTTTTGGTTAGAACTTTTTGGAATTATTTG
TA
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protein sequence of Vigun11g066700.5_Vu_IT97K-499-35_v1.1

>Vigun11g066700.5_Vu_IT97K-499-35_v1.1 ID=Vigun11g066700.5_Vu_IT97K-499-35_v1.1; Name=Vigun11g066700.5_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=504bp
MTPAVEEDHHDPSLFHDSNDRLLSSCSCSTSASDDDAPTPQNDTHALPQF
PFPTMCKYDAWISEPSSLSERRSRLLRQFGLPTPPPPAATIPRSASSHQC
TDTSTAAATIPRSKSDNTADRGTKHSKSSVVPIRYNDNGFLVNNNININC
SVSGSHSVNNRICVGVSEEGGNGEGNVVDEVEQACTIRDLDNGKEFVVKR
DGVWNEVKEVGTGRRLTVEEFEMTVGHSPIVQELMRRQSAEEVGDGDGVD
GEGDGGSAGGVDDEGDGGKVRRKGGWFKFMSLKSVVVGQKERRSGDERDT
SSSEKGGGRRSSSATDDSQDGGSGLVQGGERVRVRQYGKSCKEVTGLYKS
QKIQAHDGSIWSIKFSLDGKYLASAGEDCVIHVWRVVESERKGELLVEKP
DDGILNMLFVVNGSPEPSSPGMENNLEKKRRGRLSVSRKSLSVDQLVVPE
TVFALTEKSVCTFKGHLHDVLDLSWSKSQIKSLKRNSWTFLPLRKIIELG
LRN*
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mRNA from alignment at Vu11:16776911..16779316+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun11g066700.5_Vu_IT97K-499-35_v1.1 ID=Vigun11g066700.5_Vu_IT97K-499-35_v1.1; Name=Vigun11g066700.5; organism=Vigna unguiculata; type=mRNA; length=2406bp; location=Sequence derived from: Vu11:16776911..16779316+ (Vigna unguiculata
AAAGAGAAAGCCCCCTGTGCTTCTTCATTAGCAAACGCAAGTTCTTTGTG
CAGTCCCTACCCCAAAAGAAAGGTAGTTCTCATTCCAACACAACAATACT
GAACACAAAACAGTAGCAGAACCCACCTGGCAAACACAACACACATACAC
ACTCTCAGTGCAGGTTTTCATTTCCATTACATCTCATTAACATTCTTACT
GTACCATTCATTGGATCTGACTCAAACCGAACACGTTCCCCGGCATTGGA
TCCGTTCCACGATCCGACCCATTTTCCCTTCGGGTTGGTTGATCCAAATG
GGAATGCTCCACAAGCCATGACCCCAGCCGTGGAGGAGGACCACCACGAC
CCTTCCCTTTTCCACGACTCCAACGACCGTTTGCTCTCTTCATGCTCCTG
CTCCACGTCCGCCTCCGACGACGACGCTCCCACTCCCCAAAACGACACTC
ATGCCCTCCCTCAATTCCCCTTCCCCACCATGTGCAAGTACGATGCCTGG
ATCTCCGAACCCTCCTCCCTCTCCGAGCGCCGCTCCCGCCTCCTCCGACA
GTTCGGTCTCCCCACCCCGCCTCCCCCCGCCGCAACCATCCCCCGATCAG
CTTCCTCTCACCAATGCACCGACACTTCCACCGCCGCCGCCACTATTCCC
CGATCGAAATCCGACAATACCGCGGATCGCGGCACCAAGCATAGCAAGTC
CTCCGTTGTTCCCATTCGCTACAATGACAACGGTTTTCTCGTGAATAATA
ATATTAATATTAATTGTAGTGTTAGTGGTAGTCATTCTGTGAATAATAGG
ATTTGTGTGGGTGTATCTGAGGAGGGTGGAAATGGGGAGGGGAATGTGGT
GGATGAAGTGGAGCAAGCGTGTACGATTAGGGATTTGGACAATGGGAAGG
AGTTTGTGGTGAAGCGGGATGGGGTGTGGAATGAGGTGAAGGAGGTGGGG
ACTGGAAGGCGTTTGACTGTGGAGGAGTTTGAGATGACGGTGGGGCACTC
TCCGATTGTTCAGGAGCTAATGAGGAGGCAGAGTGCGGAGGAAGTTGGCG
ATGGGGACGGCGTGGATGGGGAAGGTGATGGTGGGAGTGCTGGTGGTGTT
GATGATGAAGGGGATGGTGGCAAAGTGAGGAGAAAAGGTGGGTGGTTTAA
GTTCATGAGTTTGAAGAGTGTTGTGGTGGGTCAGAAGGAGAGAAGGAGTG
GTGATGAGAGGGATACGTCTTCGTCAGAGAAAGGGGGTGGCCGGAGGTCA
AGCTCTGCCACGGACGATAGCCAGGATGGTGGTAGTGGTTTGGTTCAGGG
GGGTGAGAGAGTGAGGGTTAGACAGTATGGGAAGTCTTGTAAGGAGGTTA
CAGGGCTTTATAAGAGCCAGAAGATTCAGGCTCATGATGGATCCATTTGG
AGCATTAAGTTTAGTTTGGATGGGAAGTACCTTGCTAGTGCCGGTGAAGA
TTGTGTGATTCATGTTTGGCGGGTTGTGGAGTCTGAGAGGAAGGGCGAGT
TACTAGTGGAGAAACCGGACGATGGGATTTTGAACATGTTGTTTGTTGTT
AACGGGTCGCCGGAGCCTTCTTCTCCTGGCATGGAGAATAATTTGGAGAA
GAAGAGAAGGGGGAGGTTGTCTGTCAGCAGAAAATCGTTGAGCGTAGACC
AGTTAGTAGTGCCGGAAACTGTGTTTGCTCTCACTGAAAAATCGGTTTGC
ACCTTTAAGGGTCATCTCCATGACGTGCTTGACCTTTCTTGGTCCAAGTC
TCAGGTTAGCTTCTATAAAAGGATTAGATGTTATTCTTTAATTCTACTTT
TGTCTTGTATGCCTGAATATACATGTAACGTTCATTTTATTTACATTCAT
TCGTACACCCATATGCATTAAAATTGTTATTAGTTTTTCTGCTTTGTCCT
GTTAACAGATAAAATCACTTAAGAGGAACAGCTGGACTTTTCTACCGCTA
CGTAAAATTATTGAGCTTGGATTGAGAAATTGATTTAGTGCTAACCAAAC
AAGCACCGATTGAGGCTCTTGTGAGAGAAAGTGGATATAATGAAACAGTT
AGATTAAATGGGCAGAAAACCAAAACATCAGAAAGCACCAAGAAGATACT
CAATTATACCGAAAATTTGATTATTATGTATGGAACCCATTAGTCTATTG
ATTTATTTTAGCTGGCCTTGCCTAGTGGGATAAGACTTGGTTCATATTTT
ATTGTCCATTTTTAATTAGCAGAATAGGCATCAAATGTGAGTTCTGAATT
GTATCAGAGTATAATATTTATATTTATAAGTTTATGTATTGAAATGTTTA
TTTTTTATGGAATATGCTGTTAAGGGAACACAAATTGTTACTATAAGTTC
GAAGACTATTTTTGTTGATTTATTTTTTTGGTTAGAACTTTTTGGAATTA
TTTGTA
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Coding sequence (CDS) from alignment at Vu11:16776911..16779316+

>Vigun11g066700.5_Vu_IT97K-499-35_v1.1 ID=Vigun11g066700.5_Vu_IT97K-499-35_v1.1; Name=Vigun11g066700.5; organism=Vigna unguiculata; type=CDS; length=1512bp; location=Sequence derived from: Vu11:16776911..16779316+ (Vigna unguiculata
ATGACCCCAGCCGTGGAGGAGGACCACCACGACCCTTCCCTTTTCCACGA
CTCCAACGACCGTTTGCTCTCTTCATGCTCCTGCTCCACGTCCGCCTCCG
ACGACGACGCTCCCACTCCCCAAAACGACACTCATGCCCTCCCTCAATTC
CCCTTCCCCACCATGTGCAAGTACGATGCCTGGATCTCCGAACCCTCCTC
CCTCTCCGAGCGCCGCTCCCGCCTCCTCCGACAGTTCGGTCTCCCCACCC
CGCCTCCCCCCGCCGCAACCATCCCCCGATCAGCTTCCTCTCACCAATGC
ACCGACACTTCCACCGCCGCCGCCACTATTCCCCGATCGAAATCCGACAA
TACCGCGGATCGCGGCACCAAGCATAGCAAGTCCTCCGTTGTTCCCATTC
GCTACAATGACAACGGTTTTCTCGTGAATAATAATATTAATATTAATTGT
AGTGTTAGTGGTAGTCATTCTGTGAATAATAGGATTTGTGTGGGTGTATC
TGAGGAGGGTGGAAATGGGGAGGGGAATGTGGTGGATGAAGTGGAGCAAG
CGTGTACGATTAGGGATTTGGACAATGGGAAGGAGTTTGTGGTGAAGCGG
GATGGGGTGTGGAATGAGGTGAAGGAGGTGGGGACTGGAAGGCGTTTGAC
TGTGGAGGAGTTTGAGATGACGGTGGGGCACTCTCCGATTGTTCAGGAGC
TAATGAGGAGGCAGAGTGCGGAGGAAGTTGGCGATGGGGACGGCGTGGAT
GGGGAAGGTGATGGTGGGAGTGCTGGTGGTGTTGATGATGAAGGGGATGG
TGGCAAAGTGAGGAGAAAAGGTGGGTGGTTTAAGTTCATGAGTTTGAAGA
GTGTTGTGGTGGGTCAGAAGGAGAGAAGGAGTGGTGATGAGAGGGATACG
TCTTCGTCAGAGAAAGGGGGTGGCCGGAGGTCAAGCTCTGCCACGGACGA
TAGCCAGGATGGTGGTAGTGGTTTGGTTCAGGGGGGTGAGAGAGTGAGGG
TTAGACAGTATGGGAAGTCTTGTAAGGAGGTTACAGGGCTTTATAAGAGC
CAGAAGATTCAGGCTCATGATGGATCCATTTGGAGCATTAAGTTTAGTTT
GGATGGGAAGTACCTTGCTAGTGCCGGTGAAGATTGTGTGATTCATGTTT
GGCGGGTTGTGGAGTCTGAGAGGAAGGGCGAGTTACTAGTGGAGAAACCG
GACGATGGGATTTTGAACATGTTGTTTGTTGTTAACGGGTCGCCGGAGCC
TTCTTCTCCTGGCATGGAGAATAATTTGGAGAAGAAGAGAAGGGGGAGGT
TGTCTGTCAGCAGAAAATCGTTGAGCGTAGACCAGTTAGTAGTGCCGGAA
ACTGTGTTTGCTCTCACTGAAAAATCGGTTTGCACCTTTAAGGGTCATCT
CCATGACGTGCTTGACCTTTCTTGGTCCAAGTCTCAGATAAAATCACTTA
AGAGGAACAGCTGGACTTTTCTACCGCTACGTAAAATTATTGAGCTTGGA
TTGAGAAATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_rpt
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding