Vigun11g094900.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: PDCB5_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana OX=3702 GN=PDCB5 PE=2 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.150e-30 Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 1
Query: 76 GGAPPQ-ELWCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKFHS 360
GG Q ELWCVAKNNAED+SLQ A++WACG GGADCGPIQ GGPC DP+ VQ ASF FN+Y+LK+G D++CNFNNNAA+TSLNPS G CK+ S
Sbjct: 32 GGQVIQVELWCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKYPS 127
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: ALL10_OLEEU (Major pollen allergen Ole e 10 OS=Olea europaea OX=4146 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 4.840e-13 Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 94 ELWCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKFHS 360
+ WCV K A DA LQ+ +D+ C G DCGPIQ+ G C++P++V+ AS+A N ++ G D C+F+ A+TS +PS G+C F S
Sbjct: 35 KKWCVPKAEATDAQLQSNIDYVCSQSGMDCGPIQANGACFNPNTVRAHASYAMNSWYQSKGRNDFDCDFSGTGAITSSDPSNGSCSFLS 123
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum OX=4565 GN=GLC1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.182e-12 Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query: 100 WCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKFHS 360
WCVAK+ A LQ +++ACG PIQSGG C+ P+S+Q AS+ N Y+ +G TD +C+F VTS +PS+G CK+ S
Sbjct: 377 WCVAKDGANGTDLQNNINYACGFVDCK--PIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGCKYVS 461
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 1.402e-9 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 97 LWCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKF 354
++CVAK +A+D L L+WACG G A+C IQ G PCY P+ V++ ASFAFNDY+ K +C+F+ A T+ +PS+ C +
Sbjct: 361 MFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSYRTCAY 446
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3) HSP 1 Score: 59.3066 bits (142), Expect = 1.547e-9 Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 94 ELWCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKF 354
+ +C+A + + +LQAALDWACG G ++C IQ G CY P++V+ ASFAFN Y+ K G SC+F A +T+ +PS G+C F
Sbjct: 379 QTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIF 465
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana OX=3702 GN=At1g66250 PE=2 SV=2) HSP 1 Score: 58.151 bits (139), Expect = 3.609e-9 Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 94 ELWCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKF 354
+ +C A+ A+ LQAALDWACG G DC PI+ G CY+P +V A++AF+ Y+ + G D+CNFN A++T+ +PS G C F
Sbjct: 366 QTYCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTCVF 452
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: PDCB3_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 2.759e-8 Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 100 WCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKF 354
WCV K +A LQ LD+ACGAG PI GPC++P++V++ S+A N +F K G + +C+F A ++ +PS+ C F
Sbjct: 21 WCVCKEGLSEAMLQKTLDYACGAGADCG-PIHQTGPCFNPNTVKSHCSYAVNSFFQKKGQSLGTCDFAGTATFSASDPSYTTCPF 104
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana OX=3702 GN=At4g34480 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 3.994e-8 Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 100 WCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKF 354
WCV K A + LQA+LDWACG G IQ GG C++P++V + A++A N YF K C+F+ A VTS NPS+ NC +
Sbjct: 364 WCVPKKGATNEELQASLDWACGHGIDCGA-IQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNCVY 447
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: ALL9_OLEEU (Glucan endo-1,3-beta-D-glucosidase OS=Olea europaea OX=4146 GN=OLE9 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 4.539e-8 Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 1
Query: 100 WCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKFHSG 363
WCV K D L G DCGPIQ GG C++P++V+ A++ N Y+ G +C+F+ A +T+ NPS+G C F SG
Sbjct: 372 WCVPKPGVSDDQL-TGNINYACGQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQSAGRNSWNCDFSQTATLTNTNPSYGACNFPSG 458
BLAST of Vigun11g094900.1 vs. DB:Swiss
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana OX=3702 GN=At4g29360 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 5.442e-8 Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 100 WCVAKNNAEDASLQXXXXXXXXXXXXXXXPIQSGGPCYDPSSVQNTASFAFNDYFLKHGMTDDSCNFNNNAAVTSLNPSFGNCKF 354
WC+A + A LQ ALDWACG G DC +Q PC++P +V + AS+AFN Y+ + G + C+FN + +PS+GNC +
Sbjct: 391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNCLY 475 The following BLAST results are available for this feature:
BLAST of Vigun11g094900.1 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
Sequences
The
following sequences are available for this feature:
mRNA sequence >Vigun11g094900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g094900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g094900.1; organism=Vigna unguiculata; type=mRNA; length=1351bpback to top protein sequence of Vigun11g094900.1_Vu_IT97K-499-35_v1.1 >Vigun11g094900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g094900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g094900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=171bpback to top mRNA from alignment at Vu11:27724872..27726710- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Vigun11g094900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g094900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g094900.1; organism=Vigna unguiculata; type=mRNA; length=1839bp; location=Sequence derived from: Vu11:27724872..27726710- (Vigna unguiculataback to top Coding sequence (CDS) from alignment at Vu11:27724872..27726710- >Vigun11g094900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g094900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g094900.1; organism=Vigna unguiculata; type=CDS; length=513bp; location=Sequence derived from: Vu11:27724872..27726710- (Vigna unguiculataback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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