Vigun11g146900.1

Transcript Overview
NameVigun11g146900.1
Unique NameVigun11g146900.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length228
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu11supercontigVu11:35584085..35584312 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR094Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
crvuL471Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL156Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
crvuL626Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL481Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL013Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
cavuL485Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0249Cajanus cajan Asha genome v1.0Cajanus cajan
ccvuL1002Cajanus cajan Asha genome v1.0Cajanus cajan
anvuL0085Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0263Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0715Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL0930Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1042Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anvuL1084Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
vuzwsR134Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR153Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL127Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL120Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
tifvuL665Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL622Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vfhvuL635Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL201Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL025Vicia sativa cv. Studenica genome v1.0Vicia sativa
vrvvuL285Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL189Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR075Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
vuvuaR081Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL011Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canvuL451Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL046Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL505Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL017Cicer arietinum
carvuL448Cicer arietinum
vuvumR136Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR156Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR142Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vuvvaR158Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL454Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL462Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL502Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL473Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL518Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvfvuL141Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvfvuL412Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
vuvunR078Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR086Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr11.1386Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.06G165500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Hedin2.R1.6g028760.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Vigun11g146900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun11g146900Vigun11g146900_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g146900.1Vigun11g146900.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun11g146900.1_Vu_IT97K-499-35_v1.1Vigun11g146900.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun11g146900.1.v1.1.CDS.1Vigun11g146900.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
The following BLAST results are available for this feature:
BLAST of Vigun11g146900.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun11g146900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g146900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g146900.1; organism=Vigna unguiculata; type=mRNA; length=228bp
ATGTATTATATACTAAAGCACATCCAAATCAAGGTGCAAAGCCTTTGTGT
GACTACCAGTTTTGATCATGTGGACTATTCTTCTGATATCAGAATAGGCT
TTTCAGAAGGAGTATCGATGGTGGGAGTTATTGATGAGGTTTGGTTTTCA
TTAACAGAGAATGACCGCAATCCTATACTAATTGGCACAAAGACTCGTTC
TCGAGATAATCTTCCCACTGAACCATAG
back to top

protein sequence of Vigun11g146900.1_Vu_IT97K-499-35_v1.1

>Vigun11g146900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g146900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g146900.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=76bp
MYYILKHIQIKVQSLCVTTSFDHVDYSSDIRIGFSEGVSMVGVIDEVWFS
LTENDRNPILIGTKTRSRDNLPTEP*
back to top

mRNA from alignment at Vu11:35584085..35584312+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun11g146900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g146900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g146900.1; organism=Vigna unguiculata; type=mRNA; length=228bp; location=Sequence derived from: Vu11:35584085..35584312+ (Vigna unguiculata
ATGTATTATATACTAAAGCACATCCAAATCAAGGTGCAAAGCCTTTGTGT
GACTACCAGTTTTGATCATGTGGACTATTCTTCTGATATCAGAATAGGCT
TTTCAGAAGGAGTATCGATGGTGGGAGTTATTGATGAGGTTTGGTTTTCA
TTAACAGAGAATGACCGCAATCCTATACTAATTGGCACAAAGACTCGTTC
TCGAGATAATCTTCCCACTGAACCATAG
back to top

Coding sequence (CDS) from alignment at Vu11:35584085..35584312+

>Vigun11g146900.1_Vu_IT97K-499-35_v1.1 ID=Vigun11g146900.1_Vu_IT97K-499-35_v1.1; Name=Vigun11g146900.1; organism=Vigna unguiculata; type=CDS; length=228bp; location=Sequence derived from: Vu11:35584085..35584312+ (Vigna unguiculata
ATGTATTATATACTAAAGCACATCCAAATCAAGGTGCAAAGCCTTTGTGT
GACTACCAGTTTTGATCATGTGGACTATTCTTCTGATATCAGAATAGGCT
TTTCAGAAGGAGTATCGATGGTGGGAGTTATTGATGAGGTTTGGTTTTCA
TTAACAGAGAATGACCGCAATCCTATACTAATTGGCACAAAGACTCGTTC
TCGAGATAATCTTCCCACTGAACCATAG
back to top