Phvul.001G042700.1

Transcript Overview
NamePhvul.001G042700.1
Unique NamePhvul.001G042700.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01supercontigChr01:4059247..4063057 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvR047Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR058Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuR061Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvL578Pisum sativum Cameor genome v1aPisum sativum
pspvL589Pisum sativum Cameor genome v1aPisum sativum
crpvL000Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
caipvL0358Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0380Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL341Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL311Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL427Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anpvL0407Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0827Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
pvzwsR047Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR015Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR041Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR015Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR037Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR035Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR039Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR049Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvssR025Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR036Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvuaR050Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR061Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canpvL278Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL401Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL562Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL765Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL288Cicer arietinum
carpvL405Cicer arietinum
ccapvL353Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR044Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR053Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR027Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR043Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR019Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR028Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR017Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR025Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR005Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR056Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR065Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR056Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun08g046000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_09603.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004498764.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Cr_09620.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat6g024960.1Pisum sativum Cameor genome v1aPisum sativum
XM_058871088.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Va07G064240.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigan.03G244900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
jg35644.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun08g046000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_014648582.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr08.289Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat06G0069200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_09107Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vfaba.Hedin2.R1.3g208240.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.03G152900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.3g172000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_03G01709.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr01.1000308Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.001G042700Phvul.001G042700_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G042700.1Phvul.001G042700.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.001G042700.1_Pv_G19833_v2.1Phvul.001G042700.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G042700.1.v2.1.five_prime_UTR.1Phvul.001G042700.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G042700.1.v2.1.CDS.1Phvul.001G042700.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G042700.1.v2.1.CDS.2Phvul.001G042700.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G042700.1.v2.1.CDS.3Phvul.001G042700.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G042700.1.v2.1.CDS.4Phvul.001G042700.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G042700.1.v2.1.CDS.5Phvul.001G042700.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G042700.1.v2.1.three_prime_UTR.1Phvul.001G042700.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.001G042700.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..71
IPR042091Ska2, N-terminalPFAMPF16740SKA2coord: 6..112
e-value: 9.1E-39
score: 131.6

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.001G042700.1_Pv_G19833_v2.1

>Phvul.001G042700.1_Pv_G19833_v2.1 ID=Phvul.001G042700.1_Pv_G19833_v2.1; Name=Phvul.001G042700.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=152bp
MGHQYHQATDGLLNLFTKANHDLSTVHHRLEKEFLQVYPENANPMKLVSR
IKKVQEDIATLKGQCHELLAAKQDLIDQAQRILVENRNLVQRMQPALGIS
STGEDDAAFTNFKQVIEEWTAQVRSKTGNETHEADSGDINKLLFSTIVQS
N*
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mRNA from alignment at Chr01:4059247..4063057+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.001G042700.1_Pv_G19833_v2.1 ID=Phvul.001G042700.1_Pv_G19833_v2.1; Name=Phvul.001G042700.1; organism=Phaseolus vulgaris; type=mRNA; length=3811bp; location=Sequence derived from: Chr01:4059247..4063057+ (Phaseolus vulgaris
CTAGTGTCTAGATATTTGAATTTGTTTTGGCTCCGAAAACACACTGGTTA
CACCTAAACGCACGATGAACATTTGAATCCCCAATTCAGCATTGCAGCGT
GAAGCCAAGATGGGGCATCAATACCACCAAGCAACAGATGGGCTTTTGAA
CCTTTTCACAAAGGCCAATCACGATCTCTCTACAGTTCACCATCGCCTCG
AAAAGGAGTTTCTGCAGGTTTACCCTGAAAATGTAAGCACAACACCCCAT
CACTCTTTTCACTGTTTTCTGTGTACCATCATTCATATTTCTTCGATTCC
TTGCTAAAACCAATCATGGGCACCTCTAAGTTCGTACCTTTATGCTTAAA
ACTGAATTGGGTTTTGCAGGCTAACCCTATGAAACTGGTTTCTAGAATAA
AGAAGGTTCAGGAAGATATAGCAACCTTGAAGGGACAGTGCCATGAGCTT
CTGGCTGCTAAGCAGGTACTTTACTGTTAATTATTCTGCATTCTGGTGGG
TTCTATTGATTTGATTGATAGTGATACCTTAGATTTTAGATTGTGATCGC
TGTTGCAGTTGCGGTGACTCCAAAAATCTTGACATGTGGCCAACATTGCT
GTTGCGTACTTTTTATTAAAACCATACTTGTATCGATGTGTGCTTATAAA
GATGAACAACACCTTTGTTTTGAATTTGATGTTGGTTTGGTTGTTCACTT
GTGCAGGATTTGATTGATCAGGCTCAGAGAATTCTGGTGGAGAACAGGAA
TTTGGTGCAGCGAATGCAACCAGCCTTGGGCATCTCCTCCACTGGTGAAG
ATGATGCTGCATTCACTAACTTCAAACAGGTAATTGTGAATGTGTGTGCC
TTTTTGTTTTTTTGTTTTAATTGATTTTTTAAGTTGGTCCCTCAATTTAA
ATAAAAACTAATGAAATTGTGTGTGAGGGACTTGGTGTGTATCTTTTTTA
ATTGATTTTTTTTTAAGTTAGTCTGTCAGTGTTTTTATGCAGATAAAATA
ATGAAAATGTGAGCGAGTGTGTTTCCTTTTCCTTTTTTTAAAGTTAGTTC
TTCAGTGTCTTTAGAAATTTCGTATATTGGATGTCCATTTTTCTCATGAA
TTACTAAGAAGTGCATAATGGTTCACGTAGACTCTCAAGAGGAGTTTTAG
CTGTTCAAAGGATTAAGTATCTGCGCTAGGTCTTGATTTCATAAGGGAAT
AAAAAGTTATAGTTCAAAAAAGAAAGTGTAGTATCTTCCATTTTAAGGTA
TCAAAGTGGAGCATGATGGTAATTTATGCATGTATATCTATGTTATTCTC
AATGGTTGTCTATTTTCCAAATGGTGTTTTCAAGTGTTTACATTGTTTGC
CAGCAAGCAACCAAGATAAATCAAATTAGGGGCTTTGCTTTTAAATTTTA
CCCAACCAAAGGTGTCCTTGGGTAGCTTCCATGTTGCTTTGCCTACATAA
CCAAGTTTATTTTTGGTTGAGTTGGTGGAACGTGAGAACATAGAAAATGG
AGGATAGAGCAAAACAATTTCAACTGAATTTATGACTCAAAGTGGAAAAG
AATACATTCTCATTCTGTTTACGTTTTCTTGCATTTCTGTCATACCATTT
CATCCAAAATTTTGTATGTCATTAGTTTTCACCTAGACAGTCAAGCAGAA
ACTAAGTGCAGTTGCAATGATTTTTACCCAATTTTAACTGATTATGCAGG
TAATTGAAGAATGGACAGCTCAAGTAAGATCCAAAACAGGTTAGGAGTTT
GAAGGATTTATTATCTTGGCAGTTTTCCATACATCAAATTTAACAACCTT
ATTTAATGGATGTGTCATTGTTCATGTAGTTGCAAAATTTACCGGATGCC
AATGTATTGGTTTTAATTAAATATATTTTATTCAAGATCTTTTGGTCTTT
TGAAAGAGGATAATATGTTGTGATCTGGATCAGTTCCACTATCTTAGAAG
TGGGGATTGATGTGGTAAGGAAAGGGGAATGGAGTTGAATAGACATCAAT
TGGGAGAGTGAAATGACAAAAAAAAGGGGGAGAACGAGCTTGGGTTAGAG
TGTATTGTTGAGTCTCAACTACCACTTCAGGATCAAGGCTTGTGTTGTGA
GACAGTTGTTTTTTAGCCTTGGAAGGGACAGCTTGGCCTTGTTGTAGTGG
AACAACTGCATATAGCACTAGACGAAGAGTGATGGATTGAAGAACAATAT
GGAATATTATTCTCAATAAATCAGACTAGGCACATGAACAAAATTGTCAT
GAGCTAGTTTTTGCAGAAACTTGAGCTGTTAGCTGTTAACCGAAGTTCAT
GATTGGTTTTATACCTAACATTTCCTCACATGCACGAGACCTTCAAACTT
GAAGCATGGATAATGCACAAGCTCACTGTACCTTGAGCCGAAGTTCAACT
TTTATATTTAGAAAAACAGGGCCAATGTCAAGAACTAATTCTCCCAAAAG
CTTAAGCTATATTAGGTGAAGGGTTTTTATTATTTTTATATCTAATAACA
ATGAACAAGCTCATAAGTTATTTCTTCCTATAAGTGTAGTGAGGAACCCC
TCAAACCTAAATACAATGTTTTTCCTTTCCTGATCTATACAACGGAGTCA
TGCAGCTACTGGTGTATTTATACTTCCGAGTGAGCCTGCTATAGTGCCTC
AAAGTTCCTATTTGTACCATGGTACTAATATTTTCATAGTTGAGATGTTA
ACACAGTTATTACTGTTTTCATCTCATTTCTACTGACTCATTTTGTTGCA
CTTGTTTTAGTGCCTCAACGTGAAAAAATCACATGCCCACAATGATGCAG
CTCTTATTTATTTCCCTTGAAATTGAATATTTATATTATAAAGTAGATTT
AGGCTTAAGTCATCCCCACAAAATTAGTCAAAAATTAGTATGTAAGGTAA
GTTTTGCACTTATTTATACACTATAACATAATATGGTTCACCAAATTTGG
TTAGAAAAGACTCAAATACCTTACTTAAAAGTAGGGTTTTCCCCCACTTG
TACCTCCTATCTCTTTTGCTTAAGTCCTTTTTCCCCATTTGAGACTATTG
TGGGCTTTCTTGAATGAATTTGTTGATAACCAATTAGAGGAAAAAGGGAA
ATTAGCTCTCTAAAAGTTAAAATTAAGTTGTTAAAAAGCATCTTTCAGTG
AAGTTAATATGAAAAAACTTCTATAAGTTTATGCCTAAGTTAATTTTCAT
TTATGAAAAAATCATTTAATTTTTTACTTATTTTTTTTTCTTCTGTAAGG
ACTTAGTGGAAAAACATGTCTTGGTAGACCCTTTGTCTTGATTGCTTGCG
TAATTTATTTAGATTATGCCTCTGCCATTGATGTGCCTATAAAATAGGCA
GGCAGTGGCTGTGGTTAAATGTCTTATGATGCCTAATTAGGTGTAGAGTA
CATCAATGAAGGTATGGTTTGTTTCAGTGTTTTGTCCACAGTGGCATTGT
AGGGAAGGACTCTATCCAAGCATTTGGGACGAGTATTGTCAAATCTGGTT
TATCATACTGGTTGATCTTAGATAGTTACCATGCATGACACTGCAAGAAT
TCAAAAATGGTTAATATGATCTTAGGTTATTACCTTTTGTACACTGCTAG
AATTGTGGAAAAAATGAATGAATTTCTGTGAATGTGTTGAATGCAGGGAA
TGAGACACACGAGGCTGATTCTGGAGATATCAACAAACTGCTGTTCTCAA
CTATAGTTCAAAGTAATTGATCTGCTATCCAAAGAATAACAGTGTAGACT
TGTAAAGTAGCATGCTTCTAACTGGTTTCTTAAGTCATACTGACATTAAA
ACATACTTGGA
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Coding sequence (CDS) from alignment at Chr01:4059247..4063057+

>Phvul.001G042700.1_Pv_G19833_v2.1 ID=Phvul.001G042700.1_Pv_G19833_v2.1; Name=Phvul.001G042700.1; organism=Phaseolus vulgaris; type=CDS; length=456bp; location=Sequence derived from: Chr01:4059247..4063057+ (Phaseolus vulgaris
ATGGGGCATCAATACCACCAAGCAACAGATGGGCTTTTGAACCTTTTCAC
AAAGGCCAATCACGATCTCTCTACAGTTCACCATCGCCTCGAAAAGGAGT
TTCTGCAGGTTTACCCTGAAAATGCTAACCCTATGAAACTGGTTTCTAGA
ATAAAGAAGGTTCAGGAAGATATAGCAACCTTGAAGGGACAGTGCCATGA
GCTTCTGGCTGCTAAGCAGGATTTGATTGATCAGGCTCAGAGAATTCTGG
TGGAGAACAGGAATTTGGTGCAGCGAATGCAACCAGCCTTGGGCATCTCC
TCCACTGGTGAAGATGATGCTGCATTCACTAACTTCAAACAGGTAATTGA
AGAATGGACAGCTCAAGTAAGATCCAAAACAGGGAATGAGACACACGAGG
CTGATTCTGGAGATATCAACAAACTGCTGTTCTCAACTATAGTTCAAAGT
AATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR042091Ska2_N