Phvul.001G260500.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Phvul.001G260500.1 vs. DB:Swiss
Match: NUP54_ARATH (Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1 SV=1) HSP 1 Score: 469.159 bits (1206), Expect = 1.247e-164 Identity = 254/371 (68.46%), Postives = 295/371 (79.51%), Query Frame = 1
Query: 61 FGTPSSTPAFGTPSFATP---SSTPAFGTPSSTPGFGASSTPAFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXAFGFQ----NSLAAPQPSPFSNAQLTTQMANVAPVSFSLADRDVQTIVDAYKEDPGNPKYAFKHLLFSVTEPQFRVKPAGVSDIMWAEAMGKLEGMDSADRERLWPQLAQGFKDLSQRLKIQDEVIISDAERLRMTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLTVSRVKANSNGFGSSVYLPGSTKIHDQSLADLQEVLQQQMEAIARLGGVLKRDIRDMEIMITDDT 1128
FGTPSS+P+FGTPS +TP +S+PAFGTPS+TP FG S P+F S F + S P QQ QQQ QQQ SS FGFQ N+ Q +PF NAQLTTQMA VAP+ +SLADRDVQ I++AYKEDP NPKYAF+HLLFSVTEPQ+RVKPA VSDIMWAEAM KLEGMDS +RERLWPQL QGFKDLSQRLK+QDEV++SD +R++ TQSNVKMLQRH QA T P I+RL+QKEQ LQ+R+LRVMRI+E LEGKG R+PLTKGEAEL+EKL ITRQ+KG GAELSRRVQ+L T+SR +ANS GSS+YLPGSTKI +QSL D+QEVLQQ+ EAI RLG VLKRD+RDMEIM+ +DT
Sbjct: 2 FGTPSSSPSFGTPS-STPAFGTSSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFSSQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAPIPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLEGMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPSIERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELSRRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRDMRDMEIMVAEDT 371
BLAST of Phvul.001G260500.1 vs. DB:Swiss
Match: NUP54_MOUSE (Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.109e-12 Identity = 60/204 (29.41%), Postives = 104/204 (50.98%), Query Frame = 1
Query: 502 PAGVSDIMWAEAMGKLEGMDSADRERLWPQLAQGFKDLSQRLKIQDEVIISDAERLRMTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLTVSRVKANSNGFGSSVYLPGSTKIHDQSLADLQEVLQQQMEAIARLGGVLKRDIRDMEIM 1113
PAGV I+W +A +D+ D E+L P GFK+L +RLK+QD++ RL + ++ LQ++ Q T+ I + K+K L R L+V+ E G I E +L +L TI +L + R+ L++ R++ N FG +V I L ++++ L+QQ E ++ L ++K D+ D++++
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKN-QTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRKSGYAI--QADEEQLRVQLDTIQGELNAP-TQFKGRLNELMSQIRMQ---NHFG-AVKSEEKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV 494
BLAST of Phvul.001G260500.1 vs. DB:Swiss
Match: NUP54_RAT (Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 7.187e-12 Identity = 60/204 (29.41%), Postives = 104/204 (50.98%), Query Frame = 1
Query: 502 PAGVSDIMWAEAMGKLEGMDSADRERLWPQLAQGFKDLSQRLKIQDEVIISDAERLRMTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLTVSRVKANSNGFGSSVYLPGSTKIHDQSLADLQEVLQQQMEAIARLGGVLKRDIRDMEIM 1113
PAGV I+W +A +D+ D E+L P GFK+L +RLK+QD++ RL + ++ LQ++ Q T+ I + K+K L R L+V+ E G I E +L +L TI +L + R+ L++ R++ N FG +V I L ++++ L+QQ E ++ L ++K D+ D++++
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKN-QTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQAE--EEQLRVQLDTIQGELNAP-TQFKGRLNELMSQIRMQ---NHFG-AVKSEEKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV 494
BLAST of Phvul.001G260500.1 vs. DB:Swiss
Match: NUP54_HUMAN (Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.084e-11 Identity = 59/204 (28.92%), Postives = 105/204 (51.47%), Query Frame = 1
Query: 502 PAGVSDIMWAEAMGKLEGMDSADRERLWPQLAQGFKDLSQRLKIQDEVIISDAERLRMTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLTVSRVKANSNGFGSSVYLPGSTKIHDQSLADLQEVLQQQMEAIARLGGVLKRDIRDMEIM 1113
PAGV I+W +A +D+ D E+L P GFK+L +RLK+QD++ RL + ++ LQ++ Q ++ I + K+K L R L+V+ E G I E +L +L TI +L + + R+ L++ R++ N FG +V I L ++++ L+QQ E ++ L ++K D+ D++++
Sbjct: 301 PAGVDPIIWEQA-----KVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKN-QTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAI--QADEEQLRVQLDTIQGEL-NAPTQFKGRLNELMSQIRMQ---NHFG-AVRSEERYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV 491 The following BLAST results are available for this feature:
BLAST of Phvul.001G260500.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 4
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.001G260500.1_Pv_G19833_v2.1 >Phvul.001G260500.1_Pv_G19833_v2.1 ID=Phvul.001G260500.1_Pv_G19833_v2.1; Name=Phvul.001G260500.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=386bpback to top mRNA from alignment at Chr01:50850386..50853825- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.001G260500.1_Pv_G19833_v2.1 ID=Phvul.001G260500.1_Pv_G19833_v2.1; Name=Phvul.001G260500.1; organism=Phaseolus vulgaris; type=mRNA; length=3440bp; location=Sequence derived from: Chr01:50850386..50853825- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr01:50850386..50853825- >Phvul.001G260500.1_Pv_G19833_v2.1 ID=Phvul.001G260500.1_Pv_G19833_v2.1; Name=Phvul.001G260500.1; organism=Phaseolus vulgaris; type=CDS; length=1158bp; location=Sequence derived from: Chr01:50850386..50853825- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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