Phvul.001G266200.1

Transcript Overview
NamePhvul.001G266200.1
Unique NamePhvul.001G266200.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01supercontigChr01:51191966..51194376 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvvuR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvL399Pisum sativum Cameor genome v1aPisum sativum
pspvL708Pisum sativum Cameor genome v1aPisum sativum
caipvL0542Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0698Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL488Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL629Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL426Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL536Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0472Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0000Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0002Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0360Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0405Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0828Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL001Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR030Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR072Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR021Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR079Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR020Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR075Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaR000Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR030Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR062Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL397Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL514Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL453Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL409Cicer arietinum
carpvL514Cicer arietinum
ccapvL001Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL796Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR063Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR018Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR066Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvstR001Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR041Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR036Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR000Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Ca_11394Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va03G085910.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004502305.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg53478.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun01g251700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_33024Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Cr_12979.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun01g251700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Ca_13645.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
evm.model.Chr01.2359Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr01.1001778Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.001G266200Phvul.001G266200_Pv_G19833_v2.1Phaseolus vulgarisgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G266200.1.v2.1.CDS.6Phvul.001G266200.1.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G266200.1.v2.1.CDS.5Phvul.001G266200.1.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G266200.1.v2.1.CDS.4Phvul.001G266200.1.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G266200.1.v2.1.CDS.3Phvul.001G266200.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G266200.1.v2.1.CDS.2Phvul.001G266200.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.001G266200.1.v2.1.CDS.1Phvul.001G266200.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.001G266200.1Phvul.001G266200.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.001G266200.1_Pv_G19833_v2.1Phvul.001G266200.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


Homology
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 1.373e-116
Identity = 181/390 (46.41%), Postives = 248/390 (63.59%), Query Frame = 1
Query:   25 LIFVRVIASSTFCPSSLTFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSNDVSNRPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEYSSVEMESER----SAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISI---TKEDGSVATASCTNAHGTSSHCNPIVPCL 1173
            L F+++  SS         +V  +GA G+G TDD+QAFLKAW+ VC  T +  + ++P    F+LQPL F+G C    + V + G + AP + G WK   ++ +WI F+DI GLV++G G+I+GQG++WW      +RPTAL F +C ++RLS + H +SP  HI I  CN + IS + I APE SPNTDGID+  SSN+ I    I TGDDCIAINSGTS+++IS I CGPGHGISIGSLG++GE A VE + V+NC F GT NG R+KTW+GG GYAR I F  I +  V+ P+IIDQ Y+  + ++ +    SAV++S+V + N  GTS S+  V+  C   V C+EI + D+ I   +   G VA   C N  G S+   P + CL
Sbjct:   12 LFFLQIFTSSN------ALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDG-QFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GNWK--GDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK--GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: PGLR5_ARATH (Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana OX=3702 GN=At1g80170 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 6.847e-96
Identity = 165/400 (41.25%), Postives = 242/400 (60.50%), Query Frame = 1
Query:    7 NLFFVLLIFVRVIASSTFCPSSLTFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWW-------NSNDVSNRPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEY--SSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATAS-CTNAHGTSSHCNPIVPCLN 1176
            N F  LL   R  + ST   S    +V ++GA GNG TDDT+AF  AWK  C +++   ++L+P+N   LL+P+   GPC  A + + + GT+ AP    VW+ L NRRKW+ F  +S L ++GGG ++G G  WW       +SN     PTAL FH CK++R+ +++  +S + HI++ +C  + IS + + AP  SPNTDGI IS S  I I ++ + TGDDCI+I   ++ ++IS+I CGPGHGISIGSLG++     V +I V       T+NGVR+KTW+GG G   KI F +IK+  V  P+IIDQ Y  S     ++ SA+ I  +S+ +V+GTS+S  A+++SC  +  C  IL++DI +   +G   T S C  A+G+SS      PCL+
Sbjct:   29 NSFESLLQLPRRQSRSTRPRSERLLHVGNFGAKGNGVTDDTKAFADAWKTAC-SSKVKTRILVPENYTCLLRPIDLSGPCK-ARLTLQISGTIIAPNDPDVWEGL-NRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKISCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEAYGSSSGQVYPPPCLS 425          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 3.283e-92
Identity = 150/373 (40.21%), Postives = 223/373 (59.79%), Query Frame = 1
Query:   79 FNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWW-------NSNDVSN---RPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEY--SSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTNAHGT-SSHCNP 1158
            FNV  YGA G+G  D T+AF  AW+  C   +    LL+P NK F++  L F GPC P      ++G + A +    WK   N R W+QF+ ++G  + G G IDGQG  WW       N  ++ N   RPTA+ F     + +  +   NSP  H+    C  ++I  I ITAP +SPNTDGIDI  S N  +  + I TGDDC+AI +G+S++ I D+ CGPGHGISIGSLGR    A V  ++V    F+ T NG+R+KTW+GG G A  I +E+++++  + P++I+Q Y  S+   +++RSAV+I +V+Y+N++GTS++ +A++L C  ++ C +I + DIS+    G +A+    NA+G  S H  P
Sbjct:   59 FNVEKYGAVGDGKHDCTEAFSTAWQAAC--KKPSAMLLVPGNKKFVVNNLFFNGPCQP-HFTFKVDGIIAAYQNPASWK---NNRIWLQFAKLTGFTLMGKGVIDGQGKQWWAGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEMINSENPILINQFYCTSASACQNQRSAVQIQDVTYKNIRGTSATAAAIQLKCSDSMPCKDIKLSDISLKLTSGKIASCLNDNANGYFSGHVIP 425          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: QRT2_ARATH (Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=3702 GN=QRT2 PE=1 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 7.290e-91
Identity = 150/366 (40.98%), Postives = 234/366 (63.93%), Query Frame = 1
Query:   67 SSLTFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSNDVSN-------RPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEY-SSVEM-ESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISI---TKEDGSVATASCTN 1128
            S  +FNV ++GA  NG+ DD++AF+KAW+  C +T   V ++ P N+ ++L+ ++F GPC  + I   + G + A E    +K    RR WI F +++ L ++GGG+IDG G  WW  +   N        PTA+ F  C ++R+S+I  +N+ + H++   C +++  ++ +T+P +SPNTDGI +SG+ NI I  S ++TGDDCI+I SG+ +V  + I CGPGHGISIGSLG +  +A V  + V   T +GT+NGVR+KTW+GG G A+ I F+DI +  V  P+II+Q+Y   VE    ++SAV++S V Y+N++GTSS   AV+  C  N+ C  I M+++ +   T++D  V+ ASC+N
Sbjct:   67 SPRSFNVNTFGAKANGN-DDSKAFMKAWEAACSST-GIVYIVAPKNRDYMLKAVTFSGPCKSSLIIFKIYGRIEAWENPSDYK---ERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQD--VSKASCSN 425          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.060e-90
Identity = 152/377 (40.32%), Postives = 228/377 (60.48%), Query Frame = 1
Query:   34 VRVIASSTFCPSSLTFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGG--GQIDGQGAAWWN-------SNDVSNRPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEYSSVEM-ESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTNAH 1134
            + +I+S      + T +V ++GA G+G TDDTQAF KAWK  C +T      L+P  K +LL+   F+GPC       +L GT++A  +   +K   ++  W+   D++ L + GG  G I+G G  WW        S   +  PTAL  +N K++ + ++  KN+ +  ISI+ CN +E+S++ ITAP +SPNTDGI I+ + NI + +S I TGDDCI+I  GT ++ I D+ CGPGHGISIGSLG +   A V  I V    F  + NGVR+KT++GG G A+ I+F++I++  VK P+IIDQ+Y   +  E + SAV++  V Y+N+ GTS++D A+ L+C     C  I++E++ I        TASC NA+
Sbjct:   53 LSLISSDETTLEASTVSVSNFGAKGDGKTDDTQAFKKAWKKAC-STNGVTTFLVPKGKTYLLKSTRFRGPCKSLRNFQIL-GTLSASTKRSDYK---DKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQDYCDKDKCEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKIKG-----GTASCKNAN 419          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: PGLR_PERAE (Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 2.350e-90
Identity = 151/359 (42.06%), Postives = 223/359 (62.12%), Query Frame = 1
Query:   79 FNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSN-------DVSNRPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEY--SSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTN 1128
             +V  +GA G+G TDDT+AF KAWKD C +      L++P+NK +LL+ ++F GPC  + + V + GT+ A      W    NR++WI+F DIS L ++GGG  +G G  WW+S+          + PTAL F +CK++ +S +  K+S + H+S D C  +  S++ +TAPE SPNTDGI I+G+  I + +S I TGDDCI+I SG+  V  ++I CGPGHGISIGSLG    +A V  + V       T+NG+R+KTW+GG G A+ I+F++I +  V  P+IIDQ Y  S      + SAVK+S V+Y N++GTS+S+ AV+  C  +  C   ++ +I++    G   T SC+N
Sbjct:   85 ISVDDFGARGDG-TDDTKAFEKAWKDACSSGS---VLIVPENKNYLLKQITFSGPCK-SDLRVKIRGTIEASSDQSDW-VGHNRKRWIEFEDISNLTLEGGGTSNGNGETWWDSSCKRKKSLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIESGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQGGSGSAKNIKFQNIVMHNVTNPIIIDQYYCDSKDPCPEQESAVKVSNVAYMNIRGTSASEVAVKFDCSKSSPCQGYIVGNINLVGNGGKETTMSCSN 437          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: PGLR_ACTDE (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 7.616e-90
Identity = 151/376 (40.16%), Postives = 232/376 (61.70%), Query Frame = 1
Query:   67 SSLTFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSNDVSNR-------PTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEYSSVEM--ESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTNAHGT-----SSHC 1152
            +S T NV  +GA G+G  DDT+AF KAWK  C +T + V LL+P  K +L++P+SF GPC  + + + + GT+ A +    ++   + R W+ F  +  L ++GGG I+G G  WW ++  +N+       PTAL F+  K V + ++  +N+ + H+S D C +++ S++ +TAPE SPNTDGI ++G+ NI I S  I TGDDCI+I +G+  V ++DI CGPGHGISIGSLG    +A V ++ V      GT+NGVR+KTW+GG G A  I+F+++++  V+ P+IIDQ Y   +   + + SAV++  V Y+N+KGT +S+ A+   C     C  I++ED+ +  E G+ A A C N   +     S HC
Sbjct:   86 ASKTVNVDDFGAKGDGR-DDTKAFEKAWKAACSSTSSAV-LLVP-KKNYLVRPISFSGPCK-SGLTMQIYGTIEASDDRSDYR--KDGRHWLVFDSVQNLRVEGGGTINGNGKIWWQNSCKTNKALPCKDAPTALTFYKSKHVIVKNLKIENAQQIHVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKVRVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQGGSGSASNIKFQNVEMHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVELSETGVVSPHC 455          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 4.705e-88
Identity = 145/369 (39.30%), Postives = 213/369 (57.72%), Query Frame = 1
Query:   67 SSLTFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWW-------NSNDVSN---RPTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEY--SSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTNAHG 1137
            ++  FNV  YGA G+G  D T+AF   W   C   +    LL+P NK F +  L F+GPC P  +   ++GT+ A      WK   N + W+QF+ ++   + G G IDGQG  WW       N   V N   RPTA+     K V +  +   NSP  H+    C  ++I  + I AP +SPNTDGIDI  S    I    I TGDDCIAI +G+S++ I D+ CGPGHGISIGSLGR+   A V  ++V    F+ T NG+R+KTW+GG G A  I +E+++++  + P++I+Q Y  S+   +++RSAV+I  V+Y+N+ GTS++ +A++L C  +V C+ I + ++S+    G  A+    NA G
Sbjct:   55 AATVFNVEQYGAVGDGKHDSTEAFATTWNAAC--KKASAVLLVPANKKFFVNNLVFRGPCQPH-LSFKVDGTIVAQPDPARWK---NSKIWLQFAQLTDFNLMGTGVIDGQGQQWWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEMINSENPILINQFYCTSASACQNQRSAVQIQGVTYKNIHGTSATAAAIQLMCSDSVPCTGIQLSNVSLKLTSGKPASCVDKNARG 417          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: PGLR_SOLLC (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.799e-86
Identity = 151/370 (40.81%), Postives = 229/370 (61.89%), Query Frame = 1
Query:   79 FNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSNDVSNR-------PTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEY-SSVE-MESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTNAH-GTSSHCNP 1158
             NVLS+GA G+G T D  AF +AW + C ++R  V+ ++P NK +LL+ ++F GPC  ++I V + G++ A  ++  +K   +RR WI F  +  LV+ GGG I+G G  WW S+   N+       PTAL F NCK+++++++  KN+ + HI  ++C ++  S++ I A  +SPNTDG+ +S +  I I  + I TGDDCI+I SG+ +V  ++I CGPGHGISIGSLG    +A V  + V     +G  NGVR+KTW+GG G A  I+F ++++  VK P+IIDQ Y   VE    + SAV++  V Y N+KGTS++  A++  C  N  C  I+ME+I++  E G  + A+C N H   + H  P
Sbjct:   76 INVLSFGAKGDGKTYDNIAFEQAWNEAC-SSRTPVQFVVPKNKNYLLKQITFSGPCR-SSISVKIFGSLEASSKISDYK---DRRLWIAFDSVQNLVVGGGGTINGNGQVWWPSSCKINKSLPCRDAPTALTFWNCKNLKVNNLKSKNAQQIHIKFESCTNVVASNLMINASAKSPNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSQNVQATNITCGPGHGISIGSLGSGNSEAYVSNVTVNEAKIIGAENGVRIKTWQGGSGQASNIKFLNVEMQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEGIIMENINLVGESGKPSEATCKNVHFNNAEHVTP 440          
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 1.259e-85
Identity = 148/363 (40.77%), Postives = 229/363 (63.09%), Query Frame = 1
Query:   76 TFNVLSYGATGNGHTDDTQAFLKAWKDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPERVGVWKFLDNRRKWIQFSDISGLVMKGG--GQIDGQGAAWWNSNDVSNR-------PTALHFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGIDISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLGRNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGVKQPVIIDQEY-SSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNVGCSEILMEDISITKEDGSVATASCTNAH 1134
            T +V  +GA G+G TDDTQAF+ AWK  C ++   V LL+P    +LL+ +   GPCN + + V + GT++A ++   +K +    KWI F  ++ L + GG  G +DG G  WW ++   N+       PTAL F+N K + + ++  +N+ +  ISI+ C+++++S++ +TAP +SPNTDGI I+ + NI +  S I TGDDCI+I SG+ +V I+DI CGPGHGISIGSLG +   A V  + V      GT NGVR+KT++GG G A  I F++I++  VK P+IIDQ+Y    +  +E+SAV++  V YR++ GTS+S++A+  +C  N  C  I+++ ++I         A+CTNA+
Sbjct:   67 TVSVSDFGAKGDGKTDDTQAFVNAWKKAC-SSNGAVNLLVPKGNTYLLKSIQLTGPCN-SILTVQIFGTLSASQKRSDYKDIS---KWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAVQVKNVVYRDISGTSASENAITFNCSKNYPCQGIVLDRVNIKG-----GKATCTNAN 419          
The following BLAST results are available for this feature:
BLAST of Phvul.001G266200.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PGLR3_ARATH1.373e-11646.41Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR5_ARATH6.847e-9641.25Probable polygalacturonase At1g80170 OS=Arabidopsi... [more]
PGLR2_CRYJA3.283e-9240.21Polygalacturonase OS=Cryptomeria japonica OX=3369 ... [more]
QRT2_ARATH7.290e-9140.98Polygalacturonase QRT2 OS=Arabidopsis thaliana OX=... [more]
ADPG1_ARATH2.060e-9040.32Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX... [more]
PGLR_PERAE2.350e-9042.06Polygalacturonase OS=Persea americana OX=3435 PE=2... [more]
PGLR_ACTDE7.616e-9040.16Polygalacturonase OS=Actinidia deliciosa OX=3627 P... [more]
PGLR2_CHAOB4.705e-8839.30Polygalacturonase OS=Chamaecyparis obtusa OX=13415... [more]
PGLR_SOLLC2.799e-8640.81Polygalacturonase-2 OS=Solanum lycopersicum OX=408... [more]
ADPG2_ARATH1.259e-8540.77Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX... [more]
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 228..248
e-value: 5600.0
score: 1.9
coord: 258..279
e-value: 5.1
score: 16.1
coord: 205..226
e-value: 380.0
score: 9.8
coord: 178..204
e-value: 1200.0
score: 6.7
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 14..388
e-value: 4.7E-122
score: 409.9
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 58..380
e-value: 5.0E-90
score: 301.8
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 235..248
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 10..391

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.001G266200.1_Pv_G19833_v2.1

>Phvul.001G266200.1_Pv_G19833_v2.1 ID=Phvul.001G266200.1_Pv_G19833_v2.1; Name=Phvul.001G266200.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=393bp
MKNLFFVLLIFVRVIASSTFCPSSLTFNVLSYGATGNGHTDDTQAFLKAW
KDVCGATRNYVKLLIPDNKMFLLQPLSFKGPCNPATIEVLLEGTVTAPER
VGVWKFLDNRRKWIQFSDISGLVMKGGGQIDGQGAAWWNSNDVSNRPTAL
HFHNCKDVRLSSIHHKNSPRNHISIDTCNSLEISHIHITAPEESPNTDGI
DISGSSNIFIHSSHIQTGDDCIAINSGTSSVNISDIFCGPGHGISIGSLG
RNGEDARVEEIYVRNCTFVGTSNGVRVKTWRGGRGYARKIRFEDIKVVGV
KQPVIIDQEYSSVEMESERSAVKISEVSYRNVKGTSSSDSAVELSCDPNV
GCSEILMEDISITKEDGSVATASCTNAHGTSSHCNPIVPCLN*
back to top

mRNA from alignment at Chr01:51191966..51194376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.001G266200.1_Pv_G19833_v2.1 ID=Phvul.001G266200.1_Pv_G19833_v2.1; Name=Phvul.001G266200.1; organism=Phaseolus vulgaris; type=mRNA; length=2411bp; location=Sequence derived from: Chr01:51191966..51194376- (Phaseolus vulgaris
ATGAAGAACCTATTTTTTGTCCTTCTAATATTTGTTAGAGTTATTGCTTC ATCTACCTTCTGTCCTTCAAGTCTCACCTTCAACGTTCTTAGCTACGGTG CCACGGGGAATGGTCACACCGATGATACACAGGTATATTTTTTCTACTTT CTATCACACACTTTTTTTTTTTTTCATATAAAATATCTGATGTTAAATGT AATTCTCAACTTTACTCTAAGGCTTTCCTAAAAGCATGGAAGGACGTGTG TGGTGCAACTCGGAATTACGTAAAACTTCTCATACCCGACAATAAAATGT TCCTGTTGCAACCTCTGTCGTTTAAGGGCCCTTGCAATCCAGCAACCATT GAAGTTCTGGTAAATCATAAACAATTATTTAACGTAATTTCTGCACATAC ATTTATGGGATTATACTCTTTGCCTTGTAGAGATAGTATTAAGTTTAGAT TTGGCTAGATACAGATATAACGTTATTATCCAAAATAGAGTGTTCTAGAT AAGAGTACGAGGGATCTCAAACTCAGAACATTGAGAGTGACCGAGAATAA GTATAGTCTTTGTCTTCTGTGTATTTGATATAATTTTCTGATTTGTGGTG TGCCTTTAATTACTTGTATCAGAGAGTTTTGAACTCGGTCCGTGGTGCCA CAGTCTCCTACCTTCAGATATAAGTCAATAAGACTAAAAAGTCAAATTTC TTTTCACAACCTCCAATCAACTTACATGTTGTGAAGCTCGGTTATGATCA AAATGGCGTCATCGATGTTTCTGATACACCGCGGACACAGACACACGGCG GAAGCGTGTCCGACACAGTGTCGGACGCTTTTTATTGGGCCGGAAACGGC CCTCTTTCTGGATACGCGGAGGAGACACGTTTCCTTCCTTGGACACGCCA GAAAAGCTAGAAAAAAAAATTGTTGTTCAGTGTTTTAAAAACCTCTTCTC TTTCACACTAAATCTCTGATAAAATCTAAACAAAATCTCAAACAAAATAT TAAAATTTTCAAAGTAAAAATTAAACATTATATTTTCTTTTTGTTTTTTT TTATATAACAAAATATATTACTACATTTTAATTTATATACAGGCGTATTG TTTCTTATAATTTTCAATTTATCGTATCTGTGTCCGGGCTTGTTAGCTTA CATGTCTCTTAGTATGGGACTAATGATCGTACACTATGTTATATATGATT ACTAGTGATTATTTTGTGTGAATAAAATGATATGTTTGAATGCAGCTGGA GGGGACTGTCACTGCCCCAGAAAGAGTTGGGGTTTGGAAATTTTTGGATA ACAGAAGGAAATGGATACAATTCTCGGACATATCTGGTCTTGTAATGAAG GGAGGAGGGCAGATAGATGGACAAGGTGCTGCGTGGTGGAACTCCAATGA TGTCTCCAACAGGCCCACTGTATGTTCAAATGCATATATTTATTCACACA GAATTCAAACAAAATATAACTGAAACTGATAAACTTCAACAACATGTTCA GGCTCTTCATTTCCATAACTGTAAAGACGTAAGACTTAGTTCGATCCATC ACAAGAACAGCCCCAGAAATCATATAAGCATAGATACGTGCAATAGCCTA GAGATATCCCACATTCACATTACTGCACCAGAGGAAAGTCCAAACACCGA CGGCATAGATATCTCTGGATCATCCAACATCTTTATACACAGTTCCCACA TTCAAACTGGTAATTAACGTATCACTGTTTCTTTGTTATTATCACTTTCC ATTGATTAATTAATTAACACATATTGATCACAGGTGATGACTGCATTGCC ATAAACTCGGGTACTTCTTCGGTTAATATAAGCGATATTTTTTGTGGACC TGGCCACGGCATCAGGTATATATATTAGGTTAATTCGACAGCCATTTAAG AAGCTTCATGGGTTATATTTGAATTAACGTGATATTCCCTGTGTGATGTG TTGGGTGAATGAGAAGCATTGGGAGCCTGGGACGCAACGGAGAGGATGCG AGAGTTGAAGAGATATACGTGAGGAACTGCACCTTCGTGGGAACATCGAA CGGAGTGAGAGTGAAGACATGGAGGGGTGGACGAGGTTATGCGAGGAAGA TAAGATTTGAAGATATTAAAGTTGTCGGAGTGAAGCAGCCGGTGATTATC GACCAGGAATATTCCTCGGTGGAGATGGAAAGTGAGAGAAGTGCAGTGAA AATAAGCGAGGTGAGTTACCGGAACGTGAAGGGAACAAGTAGCAGTGACA GTGCAGTGGAGCTGAGTTGTGATCCGAACGTAGGTTGCAGTGAGATTTTA ATGGAGGATATTTCCATAACCAAAGAAGATGGGAGTGTAGCAACTGCATC ATGCACAAATGCACACGGCACCTCCTCTCACTGCAATCCAATCGTCCCTT GTCTTAACTAG
back to top

Coding sequence (CDS) from alignment at Chr01:51191966..51194376-

>Phvul.001G266200.1_Pv_G19833_v2.1 ID=Phvul.001G266200.1_Pv_G19833_v2.1; Name=Phvul.001G266200.1; organism=Phaseolus vulgaris; type=CDS; length=1179bp; location=Sequence derived from: Chr01:51191966..51194376- (Phaseolus vulgaris
ATGAAGAACCTATTTTTTGTCCTTCTAATATTTGTTAGAGTTATTGCTTC
ATCTACCTTCTGTCCTTCAAGTCTCACCTTCAACGTTCTTAGCTACGGTG
CCACGGGGAATGGTCACACCGATGATACACAGGCTTTCCTAAAAGCATGG
AAGGACGTGTGTGGTGCAACTCGGAATTACGTAAAACTTCTCATACCCGA
CAATAAAATGTTCCTGTTGCAACCTCTGTCGTTTAAGGGCCCTTGCAATC
CAGCAACCATTGAAGTTCTGCTGGAGGGGACTGTCACTGCCCCAGAAAGA
GTTGGGGTTTGGAAATTTTTGGATAACAGAAGGAAATGGATACAATTCTC
GGACATATCTGGTCTTGTAATGAAGGGAGGAGGGCAGATAGATGGACAAG
GTGCTGCGTGGTGGAACTCCAATGATGTCTCCAACAGGCCCACTGCTCTT
CATTTCCATAACTGTAAAGACGTAAGACTTAGTTCGATCCATCACAAGAA
CAGCCCCAGAAATCATATAAGCATAGATACGTGCAATAGCCTAGAGATAT
CCCACATTCACATTACTGCACCAGAGGAAAGTCCAAACACCGACGGCATA
GATATCTCTGGATCATCCAACATCTTTATACACAGTTCCCACATTCAAAC
TGGTGATGACTGCATTGCCATAAACTCGGGTACTTCTTCGGTTAATATAA
GCGATATTTTTTGTGGACCTGGCCACGGCATCAGCATTGGGAGCCTGGGA
CGCAACGGAGAGGATGCGAGAGTTGAAGAGATATACGTGAGGAACTGCAC
CTTCGTGGGAACATCGAACGGAGTGAGAGTGAAGACATGGAGGGGTGGAC
GAGGTTATGCGAGGAAGATAAGATTTGAAGATATTAAAGTTGTCGGAGTG
AAGCAGCCGGTGATTATCGACCAGGAATATTCCTCGGTGGAGATGGAAAG
TGAGAGAAGTGCAGTGAAAATAAGCGAGGTGAGTTACCGGAACGTGAAGG
GAACAAGTAGCAGTGACAGTGCAGTGGAGCTGAGTTGTGATCCGAACGTA
GGTTGCAGTGAGATTTTAATGGAGGATATTTCCATAACCAAAGAAGATGG
GAGTGTAGCAACTGCATCATGCACAAATGCACACGGCACCTCCTCTCACT
GCAATCCAATCGTCCCTTGTCTTAACTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR012334Pectin_lyas_fold
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity