Phvul.002G050301.1
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_PHAVU (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=ndhD PE=2 SV=2) HSP 1 Score: 384.8 bits (987), Expect = 3.819e-132 Identity = 229/233 (98.28%), Postives = 229/233 (98.28%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNFL 699
MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNG ILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTTLSMASLAL GMSGFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSIL QMFYGYKLFNTPNSYFF SGPRELFISISILIPVISIGIYPDFIFSFSADKVEAILSNFL
Sbjct: 266 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFTTLSMASLALPGMSGFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILRQMFYGYKLFNTPNSYFFDSGPRELFISISILIPVISIGIYPDFIFSFSADKVEAILSNFL 498
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_SOYBN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Glycine max OX=3847 GN=ndhD PE=3 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 2.957e-126 Identity = 219/233 (93.99%), Postives = 226/233 (97.00%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNFL 699
ME LSRAHSIF PWL+LLGSIQIIYAASTSLGQRN+KKRIAYSSVSHMGFL+LGIGSIS+TGLNG ILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFT+FT LSMASLAL GMSGFVAELIVLLGIIT+QKYLLITKILITFVTAIGMILTPIYSLS+L QMFYGYKLFNTPNSYFF SGPRELFISISILIPVISIGIYPDFIFSFSADKVEAILSNFL
Sbjct: 266 MEFLSRAHSIFSPWLILLGSIQIIYAASTSLGQRNLKKRIAYSSVSHMGFLLLGIGSISDTGLNGAILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTVFTILSMASLALPGMSGFVAELIVLLGIITSQKYLLITKILITFVTAIGMILTPIYSLSMLRQMFYGYKLFNTPNSYFFDSGPRELFISISILIPVISIGIYPDFIFSFSADKVEAILSNFL 498
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_LOTJA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lotus japonicus OX=34305 GN=ndhD PE=3 SV=1) HSP 1 Score: 352.058 bits (902), Expect = 2.653e-119 Identity = 205/232 (88.36%), Postives = 216/232 (93.10%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNF 696
MEL S AHSIFCPWLM+LGSIQIIYAAS SLGQRN+KKRIAYSSVSHMGFLI+GIGSIS+TGLNG ILQIISHGFIGAALFFL+GTSYDRLRLLYLDEMGGMA+PMPKIFT+FT LSMASLAL GMSGF AELIV GIIT+QKY LI KILITFVTAIGMILTPIYSLSIL QMFYGYK FNTPNSYFF SGPRELFISISILIP+I IGIYPDFIFSFS DKVEA+LS+F
Sbjct: 266 MELFSHAHSIFCPWLMILGSIQIIYAASASLGQRNLKKRIAYSSVSHMGFLIIGIGSISDTGLNGAILQIISHGFIGAALFFLSGTSYDRLRLLYLDEMGGMALPMPKIFTVFTILSMASLALPGMSGFFAELIVFWGIITSQKYFLIMKILITFVTAIGMILTPIYSLSILRQMFYGYKFFNTPNSYFFDSGPRELFISISILIPIIGIGIYPDFIFSFSVDKVEAVLSHF 497
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_PANGI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Panax ginseng OX=4054 GN=ndhD PE=3 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 1.083e-110 Identity = 189/232 (81.47%), Postives = 211/232 (90.95%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNF 696
MELL AHSIF PWL+++G+IQIIYAASTS GQRN+KKRIAYSSVSHMGF+++GIGSI++TGLNG ILQIISHGFIGAALFFLAGTSYDR+RL+YLDEMGG+AIPMPKIFT+FT+ SMASLAL GMSGFVAELIV GIIT+QKYLL+ KILITFV AIGMILTPIYSLS+L QMFYGYKLFN PNSY F SGPRELF+SISI +PVI IG+YPDF+ S S DKVE ILSNF
Sbjct: 266 MELLPHAHSIFSPWLVIVGTIQIIYAASTSPGQRNLKKRIAYSSVSHMGFILIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFTSFSMASLALPGMSGFVAELIVFFGIITSQKYLLMPKILITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYVFDSGPRELFVSISIFLPVIGIGMYPDFVLSLSVDKVEVILSNF 497
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_NANDO (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Nandina domestica OX=41776 GN=ndhD PE=3 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 4.117e-110 Identity = 186/232 (80.17%), Postives = 211/232 (90.95%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNF 696
MELL AHSIF PWLM++G+IQIIYAASTSLGQRN+KKRIAYSSVSHMGF ILGI SI++TGLNG ILQ+ISHGFIGAALFFLAGTSYDR+RL+YLDEMGG+AIPMPKIFT+F++ SMASLAL GMSGFVAEL+V GIIT++K+ L+ KILITFVTAIGMILTPIYSLS+L Q+FYGYK FN PNS+FF SGPRELF+SI I +PVI IGIYPDF+FS S DKVEAILSN+
Sbjct: 266 MELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFTILGISSITDTGLNGAILQMISHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTLFSSFSMASLALPGMSGFVAELVVFFGIITSEKFFLMPKILITFVTAIGMILTPIYSLSMLRQIFYGYKQFNVPNSHFFDSGPRELFVSICIFLPVIGIGIYPDFVFSLSVDKVEAILSNY 497
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_DAUCA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Daucus carota OX=4039 GN=ndhD PE=3 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 4.254e-110 Identity = 185/233 (79.40%), Postives = 213/233 (91.42%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNFL 699
MELLS AHSIF PWL+++G+IQIIYAASTSLGQRN+KKRIAYSSVSHMGF+++GIGSI++TGLNG ILQI+SHGFIGAALFFLAGTSYDR+RL+YLDEMGG+AIPMPKIFT+F++ SMASLAL GMSGFVAE IV GIIT+QKYLLI+K+ ITFV AIG+ILTPIYSLS+L QMFYGYKLFN PNSY F SGPRELF+SI+I IPVI IG+YPDF+ S S DKVE +LSNF+
Sbjct: 266 MELLSHAHSIFSPWLVIVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFILIGIGSINDTGLNGAILQIVSHGFIGAALFFLAGTSYDRIRLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAEFIVFFGIITSQKYLLISKLGITFVMAIGIILTPIYSLSMLRQMFYGYKLFNAPNSYVFDSGPRELFVSIAIFIPVIGIGMYPDFVLSLSVDKVEVLLSNFV 498
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_LACSA (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Lactuca sativa OX=4236 GN=ndhD PE=3 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 1.404e-109 Identity = 185/232 (79.74%), Postives = 211/232 (90.95%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNF 696
MELL AHSIF PWLM++G+IQIIYAASTS GQRN+KKRIAYSSVSHMGF+++GI SI++TGLNG ILQIISHGFIGAALFFLAGTSYDR+RL+YLD+MGG+AIPMPKIFT+F++ SMASLAL GMSGFVAE+IV LGIIT+QKYLL+ KI ITFV AIGMILTPIYSLS+L QMFYGYKLFNTPN+Y F SGPRELF+SISI +PVI IG+YPDF+ S S DKVE ILSN+
Sbjct: 266 MELLPHAHSIFSPWLMIVGTIQIIYAASTSPGQRNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDQMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVIVFLGIITSQKYLLMPKIAITFVMAIGMILTPIYSLSMLRQMFYGYKLFNTPNAYVFDSGPRELFVSISIFLPVIGIGMYPDFVLSLSVDKVEGILSNY 497
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_HELAN (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Helianthus annuus OX=4232 GN=ndhD PE=3 SV=1) HSP 1 Score: 323.939 bits (829), Expect = 2.871e-108 Identity = 185/232 (79.74%), Postives = 210/232 (90.52%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNF 696
MELL AHSIF PWLM++G+IQIIYAASTSLGQRN+KKRIAYSSVSHMGF+++GI SI++TGLNG ILQIISHGFIGAALFFLAGTSYDR+RL+YLDEMGG+AIPMPKIFT+F++ SMASLAL GMSGFVAE++V LGIIT+QKYLL+ KI ITFV AIGMILTPIY LS+ Q+FYGYKLFNTPNSY F SGPRELF+SISI IPVI IG+YPDF+ S S DKVE ILSN+
Sbjct: 266 MELLPHAHSIFSPWLMVVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGVAIPMPKIFTMFSSFSMASLALPGMSGFVAEVLVFLGIITSQKYLLMPKIAITFVMAIGMILTPIYLLSMSRQIFYGYKLFNTPNSYVFDSGPRELFVSISIFIPVIGIGMYPDFVLSLSVDKVEGILSNY 497
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_GUIAB (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Guizotia abyssinica OX=4230 GN=ndhD PE=3 SV=1) HSP 1 Score: 323.168 bits (827), Expect = 6.138e-108 Identity = 182/232 (78.45%), Postives = 210/232 (90.52%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNF 696
MELL AHSIF PWLM++G+IQIIYAASTSLGQRN+KKRIAYSSVSHMGF+++GI SI++TGLNG ILQIISHGFIGAALFFLAGTSYDR+RL+YLDEMGG+AIPMPKIFT+F++ S++SLAL GMSGFVAE+IV LGIIT+QKYLL+ KI+ITFV AIGMILTPIY LS+ QMFYGYKLFN PNS+ F SGPRELF+SISI +PVI IG+YPDF+ S S DKVE ILSN+
Sbjct: 266 MELLPHAHSIFSPWLMIVGTIQIIYAASTSLGQRNLKKRIAYSSVSHMGFILIGIASITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGVAIPMPKIFTMFSSFSISSLALPGMSGFVAEVIVFLGIITSQKYLLMPKIVITFVMAIGMILTPIYLLSMSRQMFYGYKLFNIPNSFVFDSGPRELFVSISIFLPVIGIGMYPDFVLSLSVDKVEGILSNY 497
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Match: NU4C_CITSI (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhD PE=3 SV=1) HSP 1 Score: 322.783 bits (826), Expect = 7.406e-108 Identity = 184/232 (79.31%), Postives = 207/232 (89.22%), Query Frame = 1 Query: 1 MELLSRAHSIFCPWLMLLGSIQIIYAASTSLGQRNVKKRIAYSSVSHMGFLILGIGSISETGLNGTILQIISHGFIGAALFFLAGTSYDRLRLLYLDEMGGMAIPMPKIFTIFXXXXXXXXXXXXXXXFVAELIVLLGIITNQKYLLITKILITFVTAIGMILTPIYSLSILCQMFYGYKLFNTPNSYFFYSGPRELFXXXXXXXXXXXXXXYPDFIFSFSADKVEAILSNF 696
MELL AHSIF PW M++G++QIIYAASTS GQRN+KKRIAYSSVSHMGF+ILGIGSI++TGLNG +LQIISHG I AALFFLAGTSYDR+R YLDEMGG+AIP+PKIFT+F+ LSMASLAL GMSGFVAELIV GIIT+QK+ L+ KI+ITFV AIGMILTPIYSLS+L QMFYGYKLFN PNSYFF SGPRELF+ ISIL+PVI IGIYPDF+ S SADK EAI+SNF
Sbjct: 266 MELLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYSLSMLRQMFYGYKLFNAPNSYFFDSGPRELFVLISILLPVIGIGIYPDFVLSLSADKAEAIISNF 497 The following BLAST results are available for this feature:
BLAST of Phvul.002G050301.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.002G050301.1_Pv_G19833_v2.1 >Phvul.002G050301.1_Pv_G19833_v2.1 ID=Phvul.002G050301.1_Pv_G19833_v2.1; Name=Phvul.002G050301.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=234bpback to top mRNA from alignment at Chr02:4659149..4659865- Legend: five_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.002G050301.1_Pv_G19833_v2.1 ID=Phvul.002G050301.1_Pv_G19833_v2.1; Name=Phvul.002G050301.1; organism=Phaseolus vulgaris; type=mRNA; length=717bp; location=Sequence derived from: Chr02:4659149..4659865- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr02:4659149..4659865- >Phvul.002G050301.1_Pv_G19833_v2.1 ID=Phvul.002G050301.1_Pv_G19833_v2.1; Name=Phvul.002G050301.1; organism=Phaseolus vulgaris; type=CDS; length=702bp; location=Sequence derived from: Chr02:4659149..4659865- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|