Phvul.003G245601.1

Transcript Overview
NamePhvul.003G245601.1
Unique NamePhvul.003G245601.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03supercontigChr03:48226210..48227013 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL128Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR191Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvR224Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuR311Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR339Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR352Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccpvL0034Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL1186Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0558Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0559Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0612Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1120Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1141Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1150Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL199Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL756Vigna angularis Jingnong 6 genome v1.1Vigna angularis
ccapvL052Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL190Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL609Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR359Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR369Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR406Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR430Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvasR367Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR377Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR362Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR405Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR370Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR430Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR396Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR418Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR283Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR305Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR327Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR364Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR285Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR312Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR324Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigun02g142200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-TanjilR_22767Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigst.01G235600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
LR48_mrnaVigan06g034600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigst.10G120500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_10G01329.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vum_01G02581.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-KK1_013173Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_14228.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun02g142200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun03g275400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.10G176700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigan.01G344400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun03g275400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr03.1479Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.003G245601Phvul.003G245601_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G245601.1Phvul.003G245601.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.003G245601.1_Pv_G19833_v2.1Phvul.003G245601.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G245601.1.v2.1.five_prime_UTR.1Phvul.003G245601.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G245601.1.v2.1.CDS.1Phvul.003G245601.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.003G245601.1.v2.1.three_prime_UTR.1Phvul.003G245601.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.003G245601.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..63

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.003G245601.1_Pv_G19833_v2.1

>Phvul.003G245601.1_Pv_G19833_v2.1 ID=Phvul.003G245601.1_Pv_G19833_v2.1; Name=Phvul.003G245601.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=90bp
MENTRLRNIAFVLFLFFILSHQSLFVHGRHLRSPLCEECSKHQNNSMSGH
GISDHEVHQEGSRRVEYEVDDFRPTTPGHSPGVGHSINN*
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mRNA from alignment at Chr03:48226210..48227013+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.003G245601.1_Pv_G19833_v2.1 ID=Phvul.003G245601.1_Pv_G19833_v2.1; Name=Phvul.003G245601.1; organism=Phaseolus vulgaris; type=mRNA; length=804bp; location=Sequence derived from: Chr03:48226210..48227013+ (Phaseolus vulgaris
AGACATCACATGCTGTGGTCGCCCAAACCTTAAAACTTTTTTTAGATTCC
ATTTTTTGCAGTTCTGGACCCTCGCATATAAATACGAACCTAGATGGAGA
AACATTTTCAGTATCGATCATCTATCTTCTCTCTTCCAACAGCACTCCTC
CATCTCCTTTCTTATCCTTCTTTACCAAGACATTATCATGGAAAACACTA
GGCTACGAAACATTGCCTTCGTTCTGTTCTTGTTCTTCATTTTGTCCCAC
CAATCTCTCTTTGTCCATGGCAGGCACTTGAGGTCTCCGTTGTGCGAAGA
GTGCTCCAAACATCAAAATAACAGCATGAGTGGTCATGGAATCAGTGATC
ATGAGGTGCACCAAGAAGGGTCAAGACGTGTAGAATATGAAGTAGATGAT
TTTAGGCCCACAACGCCAGGCCATAGTCCAGGTGTTGGTCACTCCATCAA
CAATTAACTATCAAGCGCATCCAACTTGGTTATCAATTGTGGTTGCAATT
TCGTCAGATCCTCCACATTGTGGAAAGATACAGTAAATACGGAACCAAAA
ACATTAAAACTGTGGCAGGGAATTAACACGCTCTTTCATGCTGTACTAAG
CACTAACATTTTATTTATTTTAAGCTAATTACTTGTTAGTTGATGGACTC
ACCAGCTCAAGTGAAGAAGGAAAAAAAAACTGCAGTTGTACTAATGTTTT
AGTCAATGTTAGGGTAGCATGCCTTGTAATTTCTCTTTAATTAATGGTAG
TGTTCTGATTCAAAGATGAAATAACCTCGCATTCAAGTTCAATTTTATGT
TCAC
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Coding sequence (CDS) from alignment at Chr03:48226210..48227013+

>Phvul.003G245601.1_Pv_G19833_v2.1 ID=Phvul.003G245601.1_Pv_G19833_v2.1; Name=Phvul.003G245601.1; organism=Phaseolus vulgaris; type=CDS; length=270bp; location=Sequence derived from: Chr03:48226210..48227013+ (Phaseolus vulgaris
ATGGAAAACACTAGGCTACGAAACATTGCCTTCGTTCTGTTCTTGTTCTT
CATTTTGTCCCACCAATCTCTCTTTGTCCATGGCAGGCACTTGAGGTCTC
CGTTGTGCGAAGAGTGCTCCAAACATCAAAATAACAGCATGAGTGGTCAT
GGAATCAGTGATCATGAGGTGCACCAAGAAGGGTCAAGACGTGTAGAATA
TGAAGTAGATGATTTTAGGCCCACAACGCCAGGCCATAGTCCAGGTGTTG
GTCACTCCATCAACAATTAA
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