Phvul.004G059800.1

Transcript Overview
NamePhvul.004G059800.1
Unique NamePhvul.004G059800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04supercontigChr04:8390634..8391467 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL049Pisum sativum Cameor genome v1aPisum sativum
pvvuR416Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0176Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0179Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL141Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
crpvL520Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL737Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL456Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anpvL0143Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0776Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1023Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1164Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1298Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL295Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR405Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR419Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR425Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR424Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvuaR369Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR478Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjpvL028Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL503Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL131Cicer arietinum
ccapvL684Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL825Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR483Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvasR482Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvunR381Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Psat1g082680.1Pisum sativum Cameor genome v1aPisum sativum
jg45985.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigan.11G088300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va10G049490.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat01G0212200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cc_v2.0_20768.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-TanjilR_01594Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
evm.model.Chr04.781Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan10g205600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_14696Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun04g088500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Tiffany.R1.1g091720.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.1g122280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_14809.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_04718.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vum_11G00609.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_04684.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun04g088500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.004G059800Phvul.004G059800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G059800.1Phvul.004G059800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.004G059800.1_Pv_G19833_v2.1Phvul.004G059800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G059800.1.v2.1.five_prime_UTR.1Phvul.004G059800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G059800.1.v2.1.CDS.1Phvul.004G059800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.004G059800.1.v2.1.three_prime_UTR.1Phvul.004G059800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.004G059800.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..63

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.004G059800.1_Pv_G19833_v2.1

>Phvul.004G059800.1_Pv_G19833_v2.1 ID=Phvul.004G059800.1_Pv_G19833_v2.1; Name=Phvul.004G059800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=158bp
MQRTEFEFPATDFATVVADDVVFCGKVITRRTEPGPAPQSETKTRVLPRS
ESSARSNGIVTGLRSPSGREKRWRRSESCRRHKGEMFGTVLKFPLQMELS
DIKMRQDRRECLPPPLPPRVPPKDDEDDGGESCWELVRPLRRGGTLKNLL
FRCIPIL*
back to top

mRNA from alignment at Chr04:8390634..8391467-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.004G059800.1_Pv_G19833_v2.1 ID=Phvul.004G059800.1_Pv_G19833_v2.1; Name=Phvul.004G059800.1; organism=Phaseolus vulgaris; type=mRNA; length=834bp; location=Sequence derived from: Chr04:8390634..8391467- (Phaseolus vulgaris
GAAAGATCCGAGAAAAGATACAAAGAAAAAAACAATCACTTCAACGACCG
TGTCAATGTCCATTGTTCTCGATCTCAATGCATTCTAGAAAAAAACGTCG
TAAAACCTGTGTCGTTTTCCCCCTTCTTTTTCAACTCTATATATATCTCT
CTCAGTGTTTCACCTCTTTTCTCAACTCTTTTAAACACTATTTTTCTCTT
CTGATTCATTAATTTGTTGTTTCCGTTATGCAACGCACTGAATTTGAATT
TCCGGCAACTGATTTTGCCACTGTCGTCGCCGACGACGTCGTTTTCTGCG
GCAAAGTCATAACGCGCCGAACCGAACCCGGTCCAGCACCGCAAAGCGAA
ACCAAAACCCGGGTTCTGCCGAGGTCCGAGTCCTCCGCTCGGAGCAACGG
GATCGTGACGGGGCTCCGGTCGCCTTCCGGAAGGGAAAAACGGTGGCGGA
GGAGTGAGAGTTGCCGGAGGCACAAAGGCGAGATGTTTGGAACGGTACTG
AAGTTTCCGCTGCAAATGGAACTGAGTGACATTAAGATGAGGCAGGATCG
GAGAGAATGTCTGCCGCCGCCGCTTCCGCCTAGGGTTCCGCCGAAGGACG
ACGAAGACGACGGCGGAGAGAGTTGCTGGGAACTGGTCCGGCCGTTGAGG
CGTGGGGGAACGCTTAAGAATCTTTTGTTTCGATGCATTCCCATTCTTTA
GGATTTTTCTTTTCTCTTTATTTTAAGAGTGAAGTTTATTATTATCTGTA
TAAAATAGTTTCATCAGTGTTAAACTCTTTATTTATTTCACTCCCTACTT
TTTATTTTACTTCATGAATTTTTTTATTCATTCA
back to top

Coding sequence (CDS) from alignment at Chr04:8390634..8391467-

>Phvul.004G059800.1_Pv_G19833_v2.1 ID=Phvul.004G059800.1_Pv_G19833_v2.1; Name=Phvul.004G059800.1; organism=Phaseolus vulgaris; type=CDS; length=474bp; location=Sequence derived from: Chr04:8390634..8391467- (Phaseolus vulgaris
ATGCAACGCACTGAATTTGAATTTCCGGCAACTGATTTTGCCACTGTCGT
CGCCGACGACGTCGTTTTCTGCGGCAAAGTCATAACGCGCCGAACCGAAC
CCGGTCCAGCACCGCAAAGCGAAACCAAAACCCGGGTTCTGCCGAGGTCC
GAGTCCTCCGCTCGGAGCAACGGGATCGTGACGGGGCTCCGGTCGCCTTC
CGGAAGGGAAAAACGGTGGCGGAGGAGTGAGAGTTGCCGGAGGCACAAAG
GCGAGATGTTTGGAACGGTACTGAAGTTTCCGCTGCAAATGGAACTGAGT
GACATTAAGATGAGGCAGGATCGGAGAGAATGTCTGCCGCCGCCGCTTCC
GCCTAGGGTTCCGCCGAAGGACGACGAAGACGACGGCGGAGAGAGTTGCT
GGGAACTGGTCCGGCCGTTGAGGCGTGGGGGAACGCTTAAGAATCTTTTG
TTTCGATGCATTCCCATTCTTTAG
back to top